Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039M13.5 |
| Conread position: | 4-171 |
| Cow position: | chr3:68685690-68685859 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 8-162 |
| Cow position: | chr3:68644500-68644654 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 10-158 |
| Cow position: | chr3:68714317-68714465 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-158 |
| Cow position: | chr3:68885622-68885770 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-171 |
| Cow position: | chr3:68656327-68656486 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 161-338 |
| Cow position: | chr3:68886729-68886906 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 161-344 |
| Cow position: | chr3:68644998-68645182 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 161-355 |
| Cow position: | chr3:68686783-68686981 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 162-344 |
| Cow position: | chr3:68657323-68657503 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 180, 147 |
| Conread position: | 165-323 |
| Cow position: | chr3:68673325-68673481 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 331-447 |
| Cow position: | chr3:68673686-68673801 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 334-448 |
| Cow position: | chr3:68887106-68887220 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 337-453 |
| Cow position: | chr3:68645389-68645505 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-453 |
| Cow position: | chr3:68725633-68725738 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-453 |
| Cow position: | chr3:68726148-68726253 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 447-671 |
| Cow position: | chr3:68657970-68658194 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 447-671 |
| Cow position: | chr3:68687632-68687856 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 447-671 |
| Cow position: | chr3:68726400-68726625 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 80, 46 |
| Conread position: | 447-671 |
| Cow position: | chr3:68887378-68887600 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 448-667 |
| Cow position: | chr3:68673954-68674164 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 449-671 |
| Cow position: | chr3:68645661-68645883 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 668-816 |
| Cow position: | chr3:68658345-68658493 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 674-816 |
| Cow position: | chr3:68646047-68646189 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 674-816 |
| Cow position: | chr3:68674337-68674479 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 674-816 |
| Cow position: | chr3:68688037-68688179 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 915-1116 |
| Cow position: | chr3:68658874-68659074 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 70, 40 |
| Conread position: | 915-1116 |
| Cow position: | chr3:68689115-68689313 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 915-1116 |
| Cow position: | chr3:68721227-68721428 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 915-1131 |
| Cow position: | chr3:68727325-68727539 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 915-1139 |
| Cow position: | chr3:68674857-68675079 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 917-1116 |
| Cow position: | chr3:68646582-68646781 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1122-1355 |
| Cow position: | chr3:68689438-68689685 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1125-1355 |
| Cow position: | chr3:68646905-68647142 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 68 |
| Conread position: | 1161-1353 |
| Cow position: | chr3:68675233-68675422 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 154 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1167-1380 |
| Cow position: | chr3:68727637-68727852 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 11, 69 |
| Conread position: | 1177-1355 |
| Cow position: | chr3:68721619-68721797 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1179-1355 |
| Cow position: | chr3:68659264-68659440 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1340-1463 |
| Cow position: | chr3:68659700-68659821 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1340-1463 |
| Cow position: | chr3:68689941-68690062 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1340-1463 |
| Cow position: | chr3:68722055-68722176 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1352-1463 |
| Cow position: | chr3:68675693-68675804 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1353-1463 |
| Cow position: | chr3:68647412-68647522 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.