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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8039N11.3
        

               
Conread position:
               
24-382
               

               
Cow position:
               
chr5:41528742-41528372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
24-387
               

               
Cow position:
               
chr5:41957316-41956941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
25-394
               

               
Cow position:
               
chr5:28023524-28023909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
73-388
               

               
Cow position:
               
chr5:24098729-24099060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 43
               

               
Conread position:
               
77-388
               

               
Cow position:
               
chr5:37732416-37732739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
136, 33
               

               
Conread position:
               
85-387
               

               
Cow position:
               
chr5:46738504-46738187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 60
               

               
Conread position:
               
88-311
               

               
Cow position:
               
chr5:6155140-6154918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
125, 47
               

               
Conread position:
               
88-387
               

               
Cow position:
               
chr5:54792554-54792247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
88-388
               

               
Cow position:
               
chr5:415641-415329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
114, 21
               

               
Conread position:
               
88-388
               

               
Cow position:
               
chr5:2914529-2914838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
88-388
               

               
Cow position:
               
chr5:7273909-7274219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
88-388
               

               
Cow position:
               
chr5:55628067-55628379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
88-388
               

               
Cow position:
               
chr5:57482465-57482151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
167, 22
               

               
Conread position:
               
88-388
               

               
Cow position:
               
chr5:73489480-73489167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
125, 21
               

               
Conread position:
               
89-311
               

               
Cow position:
               
chr5:49119200-49118977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 205
               

               
Conread position:
               
93-388
               

               
Cow position:
               
chr5:64781934-64781624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
106-390
               

               
Cow position:
               
chr5:31101530-31101235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
116, 109
               

               
Conread position:
               
109-388
               

               
Cow position:
               
chr5:34696697-34696991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 151
               

               
Conread position:
               
110-393
               

               
Cow position:
               
chr5:27909178-27908880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
111-390
               

               
Cow position:
               
chr5:6588930-6588630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 177
               

               
Conread position:
               
117-380
               

               
Cow position:
               
chr5:26079119-26078847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 43
               

               
Conread position:
               
117-390
               

               
Cow position:
               
chr5:31706675-31706964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 139
               

               
Conread position:
               
117-393
               

               
Cow position:
               
chr5:3964553-3964842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
195, 98
               

               
Conread position:
               
131-388
               

               
Cow position:
               
chr5:46664118-46664382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 163
               

               
Conread position:
               
131-390
               

               
Cow position:
               
chr5:10776149-10775875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
131-390
               

               
Cow position:
               
chr5:18666109-18666383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
131-390
               

               
Cow position:
               
chr5:54932103-54931830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
82, 157
               

               
Conread position:
               
158-385
               

               
Cow position:
               
chr5:3786074-3786315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 192
               

               
Conread position:
               
158-388
               

               
Cow position:
               
chr5:4069363-4069608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
159-390
               

               
Cow position:
               
chr5:10482991-10483237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
159-390
               

               
Cow position:
               
chr5:35300242-35300488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
159-390
               

               
Cow position:
               
chr5:44459626-44459872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
159-390
               

               
Cow position:
               
chr5:48468136-48467891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 234
               

               
Conread position:
               
159-390
               

               
Cow position:
               
chr5:59060761-59061007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
159-393
               

               
Cow position:
               
chr5:18122325-18122079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
159-393
               

               
Cow position:
               
chr5:46776222-46776471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
164-391
               

               
Cow position:
               
chr5:4019050-4018809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 73
               

               
Conread position:
               
166-388
               

               
Cow position:
               
chr5:48808578-48808347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
369-723
               

               
Cow position:
               
chr5:23957186-23956822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 122
               

               
Conread position:
               
370-732
               

               
Cow position:
               
chr5:31020516-31020170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
15, 61
               

               
Conread position:
               
378-679
               

               
Cow position:
               
chr5:35031237-35031544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
142, 7
               

               
Conread position:
               
378-711
               

               
Cow position:
               
chr5:9099828-9099486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
378-732
               

               
Cow position:
               
chr5:36679837-36679469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
142, 15
               

               
Conread position:
               
380-724
               

               
Cow position:
               
chr5:73967822-73967469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
145, 42
               

               
Conread position:
               
385-799
               

               
Cow position:
               
chr5:37190478-37190067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
168, 41
               

               
Conread position:
               
386-724
               

               
Cow position:
               
chr5:12146309-12146656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
139, 35
               

               
Conread position:
               
388-757
               

               
Cow position:
               
chr5:65933311-65932934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 29
               

               
Conread position:
               
389-723
               

               
Cow position:
               
chr5:38852979-38853323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 5
               

               
Conread position:
               
390-684
               

               
Cow position:
               
chr5:19969412-19969111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 27
               

               
Conread position:
               
390-711
               

               
Cow position:
               
chr5:31053041-31053371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
135, 32
               

               
Conread position:
               
392-679
               

               
Cow position:
               
chr5:34888241-34887951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
28, 246
               

               
Conread position:
               
392-732
               

               
Cow position:
               
chr5:1338277-1337932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
157, 29
               

               
Conread position:
               
393-676
               

               
Cow position:
               
chr5:26376184-26376471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
11, 245
               

               
Conread position:
               
393-679
               

               
Cow position:
               
chr5:27933391-27933685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
394-570
               

               
Cow position:
               
chr5:53001974-53001797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
155, 43
               

               
Conread position:
               
394-602
               

               
Cow position:
               
chr5:70270585-70270795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
119, 39
               

               
Conread position:
               
394-604
               

               
Cow position:
               
chr5:69466725-69466936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
131, 28
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr5:12672401-12672081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
394-724
               

               
Cow position:
               
chr5:12323170-12322843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 35
               

               
Conread position:
               
394-732
               

               
Cow position:
               
chr5:37736309-37736656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
131, 27
               

               
Conread position:
               
394-746
               

               
Cow position:
               
chr5:23140953-23140596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
131, 28
               

               
Conread position:
               
394-753
               

               
Cow position:
               
chr5:58855728-58856094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 43
               

               
Conread position:
               
394-793
               

               
Cow position:
               
chr5:74644035-74643651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
394-799
               

               
Cow position:
               
chr5:58460781-58460367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
127, 40
               

               
Conread position:
               
395-523
               

               
Cow position:
               
chr5:15722670-15722546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
395-607
               

               
Cow position:
               
chr5:42673719-42673929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
146, 33
               

               
Conread position:
               
395-793
               

               
Cow position:
               
chr5:64524256-64523839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
138, 43
               

               
Conread position:
               
395-800
               

               
Cow position:
               
chr5:41392368-41392767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
395-805
               

               
Cow position:
               
chr5:14420720-14420303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
396-523
               

               
Cow position:
               
chr5:28229753-28229876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
396-676
               

               
Cow position:
               
chr5:15882856-15882563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
30, 138
               

               
Conread position:
               
396-680
               

               
Cow position:
               
chr5:41604232-41604528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
396-681
               

               
Cow position:
               
chr5:58539868-58540158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
396-719
               

               
Cow position:
               
chr5:61030609-61030271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
396-748
               

               
Cow position:
               
chr5:26790818-26790470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 26
               

               
Conread position:
               
396-753
               

               
Cow position:
               
chr5:44848388-44848030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
397-679
               

               
Cow position:
               
chr5:4353636-4353932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 217
               

               
Conread position:
               
397-680
               

               
Cow position:
               
chr5:50573384-50573670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 37
               

               
Conread position:
               
397-732
               

               
Cow position:
               
chr5:52040683-52040349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
398-765
               

               
Cow position:
               
chr5:34528193-34528554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 26
               

               
Conread position:
               
399-536
               

               
Cow position:
               
chr5:31918250-31918387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
399-539
               

               
Cow position:
               
chr5:6032624-6032763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
125, 23
               

               
Conread position:
               
399-550
               

               
Cow position:
               
chr5:9024652-9024504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
399-550
               

               
Cow position:
               
chr5:33820881-33820731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-557
               

               
Cow position:
               
chr5:56820892-56821039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
399-565
               

               
Cow position:
               
chr5:58796012-58795843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-569
               

               
Cow position:
               
chr5:38838638-38838466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
122, 18
               

               
Conread position:
               
399-573
               

               
Cow position:
               
chr5:71846049-71846226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
399-602
               

               
Cow position:
               
chr5:23912518-23912724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
399-603
               

               
Cow position:
               
chr5:32809374-32809165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
399-604
               

               
Cow position:
               
chr5:40423273-40423479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
150, 23
               

               
Conread position:
               
399-613
               

               
Cow position:
               
chr5:66972031-66972248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
122, 20
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr5:51951979-51952208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 108
               

               
Conread position:
               
399-626
               

               
Cow position:
               
chr5:34192581-34192804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
399-628
               

               
Cow position:
               
chr5:12315946-12316175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
148, 23
               

               
Conread position:
               
399-634
               

               
Cow position:
               
chr5:63607938-63607695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
399-637
               

               
Cow position:
               
chr5:51683613-51683375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
150, 32
               

               
Conread position:
               
399-637
               

               
Cow position:
               
chr5:53381207-53381448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-641
               

               
Cow position:
               
chr5:6150368-6150117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
126, 40
               

               
Conread position:
               
399-651
               

               
Cow position:
               
chr5:32394241-32394483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
159, 29
               

               
Conread position:
               
399-651
               

               
Cow position:
               
chr5:59873895-59873644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
154, 27
               

               
Conread position:
               
399-652
               

               
Cow position:
               
chr5:54126712-54126964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
399-659
               

               
Cow position:
               
chr5:4071501-4071766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
399-664
               

               
Cow position:
               
chr5:60210510-60210239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
128, 39
               

               
Conread position:
               
399-671
               

               
Cow position:
               
chr5:44707943-44707664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
399-675
               

               
Cow position:
               
chr5:52289410-52289685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
126, 39
               

               
Conread position:
               
399-678
               

               
Cow position:
               
chr5:57365444-57365164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
399-679
               

               
Cow position:
               
chr5:42096251-42096543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
399-680
               

               
Cow position:
               
chr5:27010923-27011210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
399-680
               

               
Cow position:
               
chr5:31635078-31635348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
399-680
               

               
Cow position:
               
chr5:41953183-41952894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
399-680
               

               
Cow position:
               
chr5:46708810-46709097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
124, 33
               

               
Conread position:
               
399-680
               

               
Cow position:
               
chr5:48224946-48224662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
399-680
               

               
Cow position:
               
chr5:52831077-52831359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
128, 35
               

               
Conread position:
               
399-680
               

               
Cow position:
               
chr5:54714113-54713826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 23
               

               
Conread position:
               
399-680
               

               
Cow position:
               
chr5:64778352-64778064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 18
               

               
Conread position:
               
399-681
               

               
Cow position:
               
chr5:53764116-53763843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
399-687
               

               
Cow position:
               
chr5:14904427-14904155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 38
               

               
Conread position:
               
399-704
               

               
Cow position:
               
chr5:14630279-14629965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
399-705
               

               
Cow position:
               
chr5:41981031-41981336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
399-709
               

               
Cow position:
               
chr5:43457879-43457573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
154, 23
               

               
Conread position:
               
399-711
               

               
Cow position:
               
chr5:14635925-14635608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-711
               

               
Cow position:
               
chr5:17386966-17386643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-711
               

               
Cow position:
               
chr5:48718453-48718768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-712
               

               
Cow position:
               
chr5:15363522-15363840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
150, 29
               

               
Conread position:
               
399-714
               

               
Cow position:
               
chr5:26101373-26101691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-716
               

               
Cow position:
               
chr5:50863980-50864318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 332
               

               
Conread position:
               
399-722
               

               
Cow position:
               
chr5:49820770-49821103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
399-723
               

               
Cow position:
               
chr5:4388982-4389313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-723
               

               
Cow position:
               
chr5:18557764-18557441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-723
               

               
Cow position:
               
chr5:19813591-19813258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 30
               

               
Conread position:
               
399-723
               

               
Cow position:
               
chr5:35988945-35989278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
399-723
               

               
Cow position:
               
chr5:50729128-50729457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 23
               

               
Conread position:
               
399-723
               

               
Cow position:
               
chr5:74550097-74550428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-724
               

               
Cow position:
               
chr5:29903893-29903560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
399-724
               

               
Cow position:
               
chr5:30302527-30302851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
399-724
               

               
Cow position:
               
chr5:46510239-46509909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
399-726
               

               
Cow position:
               
chr5:7193059-7193390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
122, 18
               

               
Conread position:
               
399-729
               

               
Cow position:
               
chr5:279526-279187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-730
               

               
Cow position:
               
chr5:70960519-70960171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
399-731
               

               
Cow position:
               
chr5:30486880-30487202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 30
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:3204467-3204803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:5785810-5785487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 39
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:5937953-5938291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:7498331-7497989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:9385358-9385029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:13691946-13691602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 23
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:18287296-18287636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:22737734-22738074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:23354365-23354703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:26505774-26505435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
150, 22
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:34612427-34612768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:34709421-34709763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:45705660-45706012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 296
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:47343528-47343868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:47559907-47559570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:47601440-47601785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 22
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:47704506-47704160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 27
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:51936790-51937126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
150, 22
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:54869046-54869385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
399-732
               

               
Cow position:
               
chr5:62678287-62678628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
399-733
               

               
Cow position:
               
chr5:39299157-39299499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
399-737
               

               
Cow position:
               
chr5:3544949-3545297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
399-742
               

               
Cow position:
               
chr5:14550958-14550602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 23
               

               
Conread position:
               
399-742
               

               
Cow position:
               
chr5:31469945-31469603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
399-746
               

               
Cow position:
               
chr5:12149175-12149522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 32
               

               
Conread position:
               
399-746
               

               
Cow position:
               
chr5:65776768-65776399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
32, 120
               

               
Conread position:
               
399-747
               

               
Cow position:
               
chr5:23856534-23856178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 27
               

               
Conread position:
               
399-747
               

               
Cow position:
               
chr5:72564388-72564746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
399-748
               

               
Cow position:
               
chr5:4218512-4218855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 23
               

               
Conread position:
               
399-751
               

               
Cow position:
               
chr5:47317339-47316983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
399-753
               

               
Cow position:
               
chr5:29827682-29828039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
399-753
               

               
Cow position:
               
chr5:61839817-61840182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
399-755
               

               
Cow position:
               
chr5:33414776-33414417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
399-756
               

               
Cow position:
               
chr5:35207890-35208257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 29
               

               
Conread position:
               
399-756
               

               
Cow position:
               
chr5:41951452-41951101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
399-757
               

               
Cow position:
               
chr5:21040345-21039981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
399-757
               

               
Cow position:
               
chr5:44583485-44583134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
399-757
               

               
Cow position:
               
chr5:50637464-50637821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
399-758
               

               
Cow position:
               
chr5:15478738-15479119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 23
               

               
Conread position:
               
399-761
               

               
Cow position:
               
chr5:16184721-16185085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
399-762
               

               
Cow position:
               
chr5:34463955-34463586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
399-762
               

               
Cow position:
               
chr5:53855331-53855697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
399-765
               

               
Cow position:
               
chr5:3242836-3242474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
125, 27
               

               
Conread position:
               
399-768
               

               
Cow position:
               
chr5:50821417-50821787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
399-769
               

               
Cow position:
               
chr5:6129985-6130358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 35
               

               
Conread position:
               
399-769
               

               
Cow position:
               
chr5:54310958-54311340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
399-770
               

               
Cow position:
               
chr5:22565267-22565641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
399-791
               

               
Cow position:
               
chr5:34638522-34638906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 38
               

               
Conread position:
               
399-792
               

               
Cow position:
               
chr5:15598604-15598212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
399-793
               

               
Cow position:
               
chr5:6528310-6528707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 39
               

               
Conread position:
               
399-793
               

               
Cow position:
               
chr5:27015322-27015704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 39
               

               
Conread position:
               
399-793
               

               
Cow position:
               
chr5:34115271-34115677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
28, 247
               

               
Conread position:
               
399-793
               

               
Cow position:
               
chr5:41546261-41545869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
399-793
               

               
Cow position:
               
chr5:66366162-66366534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
399-795
               

               
Cow position:
               
chr5:74015569-74015969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
124, 23
               

               
Conread position:
               
399-799
               

               
Cow position:
               
chr5:12873376-12873781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
399-799
               

               
Cow position:
               
chr5:31480782-31481178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
399-800
               

               
Cow position:
               
chr5:16508721-16509131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
399-800
               

               
Cow position:
               
chr5:26094541-26094135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
98, 27
               

               
Conread position:
               
399-800
               

               
Cow position:
               
chr5:27403611-27403198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 27
               

               
Conread position:
               
399-800
               

               
Cow position:
               
chr5:59082563-59082163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
399-909
               

               
Cow position:
               
chr5:25231379-25230859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
400-523
               

               
Cow position:
               
chr5:7042088-7041969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
400-523
               

               
Cow position:
               
chr5:68871789-68871908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
400-546
               

               
Cow position:
               
chr5:49428670-49428516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
400-592
               

               
Cow position:
               
chr5:65312603-65312794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
125, 26
               

               
Conread position:
               
400-679
               

               
Cow position:
               
chr5:351202-350916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
400-708
               

               
Cow position:
               
chr5:66064758-66065073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
124, 21
               

               
Conread position:
               
400-716
               

               
Cow position:
               
chr5:58519770-58519449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
400-723
               

               
Cow position:
               
chr5:59759023-59759342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
400-732
               

               
Cow position:
               
chr5:21524795-21525137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 22
               

               
Conread position:
               
400-742
               

               
Cow position:
               
chr5:34506296-34505950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
400-746
               

               
Cow position:
               
chr5:26096927-26097278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
400-753
               

               
Cow position:
               
chr5:24348751-24349098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 29
               

               
Conread position:
               
400-793
               

               
Cow position:
               
chr5:16206512-16206129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 27
               

               
Conread position:
               
400-793
               

               
Cow position:
               
chr5:39447905-39447511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
400-809
               

               
Cow position:
               
chr5:13127873-13127458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
401-637
               

               
Cow position:
               
chr5:60968072-60968302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 158
               

               
Conread position:
               
401-693
               

               
Cow position:
               
chr5:62436779-62437080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
124, 33
               

               
Conread position:
               
401-711
               

               
Cow position:
               
chr5:19300144-19299830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
123, 5
               

               
Conread position:
               
402-572
               

               
Cow position:
               
chr5:28456881-28456712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
125, 20
               

               
Conread position:
               
402-572
               

               
Cow position:
               
chr5:28460183-28460014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
125, 20
               

               
Conread position:
               
402-585
               

               
Cow position:
               
chr5:34482059-34481873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
123, 20
               

               
Conread position:
               
402-675
               

               
Cow position:
               
chr5:17982756-17982479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
402-679
               

               
Cow position:
               
chr5:49220839-49220556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
119, 10
               

               
Conread position:
               
402-724
               

               
Cow position:
               
chr5:51309599-51309930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
119, 19
               

               
Conread position:
               
402-726
               

               
Cow position:
               
chr5:20408026-20407707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
125, 20
               

               
Conread position:
               
402-732
               

               
Cow position:
               
chr5:14141319-14141657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
402-732
               

               
Cow position:
               
chr5:53184847-53184504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
402-732
               

               
Cow position:
               
chr5:55430267-55430606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
137, 20
               

               
Conread position:
               
402-775
               

               
Cow position:
               
chr5:41410788-41410403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
121, 35
               

               
Conread position:
               
403-679
               

               
Cow position:
               
chr5:39173554-39173271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
117, 13
               

               
Conread position:
               
403-723
               

               
Cow position:
               
chr5:47889082-47888752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 19
               

               
Conread position:
               
403-726
               

               
Cow position:
               
chr5:56442914-56443246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
403-748
               

               
Cow position:
               
chr5:67932837-67932482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
23, 166
               

               
Conread position:
               
403-792
               

               
Cow position:
               
chr5:14314156-14314551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 22
               

               
Conread position:
               
404-725
               

               
Cow position:
               
chr5:40058212-40058514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
404-793
               

               
Cow position:
               
chr5:55756804-55756396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 22
               

               
Conread position:
               
405-597
               

               
Cow position:
               
chr5:25913397-25913584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
405-679
               

               
Cow position:
               
chr5:5106883-5107164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
115, 11
               

               
Conread position:
               
405-679
               

               
Cow position:
               
chr5:59877103-59876821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
405-719
               

               
Cow position:
               
chr5:15760733-15760407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
405-724
               

               
Cow position:
               
chr5:27548854-27548534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
144, 16
               

               
Conread position:
               
405-729
               

               
Cow position:
               
chr5:70290120-70290444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
120, 18
               

               
Conread position:
               
405-732
               

               
Cow position:
               
chr5:1105225-1104896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 17
               

               
Conread position:
               
405-732
               

               
Cow position:
               
chr5:12640594-12640270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
405-732
               

               
Cow position:
               
chr5:28247812-28248139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 17
               

               
Conread position:
               
405-732
               

               
Cow position:
               
chr5:42777409-42777730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 29
               

               
Conread position:
               
405-732
               

               
Cow position:
               
chr5:63103546-63103882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
114, 17
               

               
Conread position:
               
405-747
               

               
Cow position:
               
chr5:30816350-30816703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 17
               

               
Conread position:
               
405-798
               

               
Cow position:
               
chr5:2395232-2395629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
115, 11
               

               
Conread position:
               
406-547
               

               
Cow position:
               
chr5:12105437-12105577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 16
               

               
Conread position:
               
406-680
               

               
Cow position:
               
chr5:70249785-70250057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 139
               

               
Conread position:
               
406-681
               

               
Cow position:
               
chr5:44369531-44369812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
406-722
               

               
Cow position:
               
chr5:26403867-26403542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
406-724
               

               
Cow position:
               
chr5:66338722-66339037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 16
               

               
Conread position:
               
406-733
               

               
Cow position:
               
chr5:39675812-39675483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
41, 287
               

               
Conread position:
               
407-723
               

               
Cow position:
               
chr5:72902192-72902519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
118, 37
               

               
Conread position:
               
408-590
               

               
Cow position:
               
chr5:29843945-29844130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
113, 19
               

               
Conread position:
               
408-673
               

               
Cow position:
               
chr5:24925472-24925738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
408-678
               

               
Cow position:
               
chr5:52604235-52603975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
408-687
               

               
Cow position:
               
chr5:29431951-29431672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
408-734
               

               
Cow position:
               
chr5:20974808-20974477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
119, 28
               

               
Conread position:
               
408-770
               

               
Cow position:
               
chr5:42667754-42667384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
113, 18
               

               
Conread position:
               
409-678
               

               
Cow position:
               
chr5:26335481-26335205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 22
               

               
Conread position:
               
409-681
               

               
Cow position:
               
chr5:30347316-30347043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
416-679
               

               
Cow position:
               
chr5:3229098-3228822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
416-679
               

               
Cow position:
               
chr5:41370974-41371250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
417-550
               

               
Cow position:
               
chr5:3966977-3967116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-550
               

               
Cow position:
               
chr5:48026933-48027071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-561
               

               
Cow position:
               
chr5:23777943-23778096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-562
               

               
Cow position:
               
chr5:5081123-5081277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
417-565
               

               
Cow position:
               
chr5:6124497-6124340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-565
               

               
Cow position:
               
chr5:33077611-33077768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-565
               

               
Cow position:
               
chr5:42769357-42769200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-569
               

               
Cow position:
               
chr5:25935892-25936051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-603
               

               
Cow position:
               
chr5:408107-408301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 167
               

               
Conread position:
               
417-623
               

               
Cow position:
               
chr5:34583650-34583435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-628
               

               
Cow position:
               
chr5:34480329-34480109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-632
               

               
Cow position:
               
chr5:5814434-5814210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-632
               

               
Cow position:
               
chr5:27461404-27461180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-637
               

               
Cow position:
               
chr5:4041803-4042032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-637
               

               
Cow position:
               
chr5:26053397-26053626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
417-637
               

               
Cow position:
               
chr5:31687039-31687268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-637
               

               
Cow position:
               
chr5:38439497-38439726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
417-637
               

               
Cow position:
               
chr5:39368573-39368344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-637
               

               
Cow position:
               
chr5:43395958-43396187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-637
               

               
Cow position:
               
chr5:45179183-45178954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-637
               

               
Cow position:
               
chr5:59147272-59147501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-654
               

               
Cow position:
               
chr5:41332002-41332252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-672
               

               
Cow position:
               
chr5:47959508-47959776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-675
               

               
Cow position:
               
chr5:30158063-30158334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-675
               

               
Cow position:
               
chr5:59135085-59135356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 219
               

               
Conread position:
               
417-678
               

               
Cow position:
               
chr5:48227459-48227733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:247969-248244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:709485-709212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 179
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:1058901-1058625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:4015113-4014839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 182
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:4962726-4962455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:6454998-6454730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 231
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:6616208-6616483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:9164990-9164715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:10250607-10250332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:10300013-10300288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:10482731-10482456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:11129666-11129940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:13271179-13271454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:17048039-17048322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 227
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:19020577-19020302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
103, 217
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:24633740-24634015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:27046573-27046848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:27501311-27501036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:29633318-29633043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:29635095-29635370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:30259065-30258790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:33870177-33869902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:35543325-35543600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:36369326-36369051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:37609343-37609068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:37782469-37782198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:37801367-37801642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:39363537-39363808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:40116112-40115837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:40864665-40864940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:41586940-41587214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:42283829-42284104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:42871483-42871758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:44616995-44616720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:46845407-46845132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:47055283-47055008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:48374329-48374604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:49103491-49103766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:49239898-49240173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:50675037-50674762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:50982007-50982281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
18, 218
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:55685203-55685478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:56879580-56879855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:56931225-56930947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 171
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:57879533-57879801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 168
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:58100046-58099772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:58202198-58202473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:58323834-58324109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 219
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:58441181-58441456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:59450297-59450021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:59518350-59518073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:60897203-60896929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:64061993-64062268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:68273183-68272908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr5:68377257-68377532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-680
               

               
Cow position:
               
chr5:51165645-51165369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 219
               

               
Conread position:
               
417-706
               

               
Cow position:
               
chr5:1394785-1394485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-719
               

               
Cow position:
               
chr5:10838441-10838124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-719
               

               
Cow position:
               
chr5:18072250-18071934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
417-720
               

               
Cow position:
               
chr5:9056318-9056000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-721
               

               
Cow position:
               
chr5:38818850-38818539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 141
               

               
Conread position:
               
417-722
               

               
Cow position:
               
chr5:31119531-31119228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 141
               

               
Conread position:
               
417-722
               

               
Cow position:
               
chr5:58329697-58330017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-722
               

               
Cow position:
               
chr5:60376574-60376261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 150
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:630846-631167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:1163664-1163985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:1282163-1281852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 133
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:4716096-4715775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:4753468-4753147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:6694340-6694019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:6735123-6734802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:7007138-7006812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 294
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:10260760-10260443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
20, 153
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:10283787-10284110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:10514786-10515100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 232
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:11763475-11763796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:11988816-11988495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
23, 289
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:12324908-12324587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:13453576-13453255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:15530217-15529899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:19890731-19891052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:20107366-20107047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:24086036-24085719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 215
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:24614087-24614413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:26075028-26074707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:26138779-26138458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:28013523-28013844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:30274424-30274103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:34682697-34682378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 93
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:35455480-35455159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:37380751-37381072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:37626512-37626829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 231
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:45025495-45025174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:46816440-46816125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 21
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:48496930-48497250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:49970312-49969991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:52226605-52226284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:52822543-52822222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:54360532-54360211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:54678918-54678597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:54927261-54926940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:54929589-54929272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:56271470-56271149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
20, 168
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:59065109-59065431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
417-723
               

               
Cow position:
               
chr5:59136184-59136507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
417-727
               

               
Cow position:
               
chr5:11631319-11630988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-732
               

               
Cow position:
               
chr5:26647360-26647688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
51, 203
               

               
Conread position:
               
417-732
               

               
Cow position:
               
chr5:46732694-46732366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
108, 147
               

               
Conread position:
               
417-732
               

               
Cow position:
               
chr5:61054988-61054671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 150
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:13807096-13806770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
20, 209
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:14542810-14542481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 139
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:20270421-20270752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 323
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:31285523-31285854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 323
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:37288850-37289173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 179
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:41067664-41067993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 321
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:44276261-44276589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
20, 320
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:47564651-47564320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
23, 289
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:49286819-49286491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:50622580-50622251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 321
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:55723195-55723525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 128
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:58322070-58321731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 331
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:74162056-74161730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
20, 318
               

               
Conread position:
               
417-734
               

               
Cow position:
               
chr5:75754457-75754126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 219
               

               
Conread position:
               
417-736
               

               
Cow position:
               
chr5:31709958-31710292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-739
               

               
Cow position:
               
chr5:61763100-61762765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-743
               

               
Cow position:
               
chr5:9867819-9868157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
20, 290
               

               
Conread position:
               
417-765
               

               
Cow position:
               
chr5:72857543-72857909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-776
               

               
Cow position:
               
chr5:18118309-18117936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
417-798
               

               
Cow position:
               
chr5:442648-442262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 319
               

               
Conread position:
               
417-798
               

               
Cow position:
               
chr5:46587399-46587009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 323
               

               
Conread position:
               
417-798
               

               
Cow position:
               
chr5:46628345-46628737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
20, 323
               

               
Conread position:
               
417-809
               

               
Cow position:
               
chr5:1690552-1690956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 292
               

               
Conread position:
               
417-809
               

               
Cow position:
               
chr5:3066002-3065600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
417-809
               

               
Cow position:
               
chr5:4571210-4571618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 356
               

               
Conread position:
               
417-809
               

               
Cow position:
               
chr5:37430850-37430446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 289
               

               
Conread position:
               
418-723
               

               
Cow position:
               
chr5:29893629-29893949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
418-787
               

               
Cow position:
               
chr5:72172678-72173052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 114
               

               
Conread position:
               
421-637
               

               
Cow position:
               
chr5:9001702-9001477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
16, 153
               

               
Conread position:
               
421-669
               

               
Cow position:
               
chr5:39284630-39284375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
99, 19
               

               
Conread position:
               
421-679
               

               
Cow position:
               
chr5:22761912-22761641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
421-679
               

               
Cow position:
               
chr5:23881661-23881390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
421-679
               

               
Cow position:
               
chr5:53075200-53074931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 213
               

               
Conread position:
               
421-709
               

               
Cow position:
               
chr5:35123898-35123592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
421-734
               

               
Cow position:
               
chr5:15677730-15678053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 315
               

               
Conread position:
               
421-734
               

               
Cow position:
               
chr5:41547360-41547037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 211
               

               
Conread position:
               
421-734
               

               
Cow position:
               
chr5:46667739-46668062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
16, 315
               

               
Conread position:
               
422-570
               

               
Cow position:
               
chr5:34560790-34560944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
422-638
               

               
Cow position:
               
chr5:65017216-65017434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
107, 92
               

               
Conread position:
               
422-709
               

               
Cow position:
               
chr5:73222349-73222633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
208, 79
               

               
Conread position:
               
422-732
               

               
Cow position:
               
chr5:51357854-51357534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
422-748
               

               
Cow position:
               
chr5:60519822-60520147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 104
               

               
Conread position:
               
423-679
               

               
Cow position:
               
chr5:41469457-41469721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
423-732
               

               
Cow position:
               
chr5:65593527-65593840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
104, 7
               

               
Conread position:
               
423-770
               

               
Cow position:
               
chr5:4630775-4631127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 143
               

               
Conread position:
               
424-569
               

               
Cow position:
               
chr5:12161254-12161107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
424-678
               

               
Cow position:
               
chr5:21188606-21188867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 36
               

               
Conread position:
               
424-679
               

               
Cow position:
               
chr5:19283835-19283569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
424-679
               

               
Cow position:
               
chr5:32342749-32342485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 161
               

               
Conread position:
               
424-679
               

               
Cow position:
               
chr5:43031271-43031005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
424-680
               

               
Cow position:
               
chr5:47589920-47589654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
424-732
               

               
Cow position:
               
chr5:3696618-3696934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
424-732
               

               
Cow position:
               
chr5:7140434-7140142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
12, 89
               

               
Conread position:
               
424-732
               

               
Cow position:
               
chr5:34288818-34288505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 189
               

               
Conread position:
               
424-793
               

               
Cow position:
               
chr5:32697147-32696798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 107
               

               
Conread position:
               
425-586
               

               
Cow position:
               
chr5:1677237-1677068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
425-723
               

               
Cow position:
               
chr5:694232-694540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
106, 210
               

               
Conread position:
               
425-732
               

               
Cow position:
               
chr5:13908953-13908647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
425-734
               

               
Cow position:
               
chr5:11639171-11639490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 285
               

               
Conread position:
               
425-737
               

               
Cow position:
               
chr5:7277562-7277869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
252, 106
               

               
Conread position:
               
425-761
               

               
Cow position:
               
chr5:41523139-41522804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 152
               

               
Conread position:
               
425-804
               

               
Cow position:
               
chr5:21828507-21828905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 345
               

               
Conread position:
               
426-528
               

               
Cow position:
               
chr5:24837388-24837286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
426-601
               

               
Cow position:
               
chr5:38286752-38286936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
426-678
               

               
Cow position:
               
chr5:40233784-40234042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 237
               

               
Conread position:
               
426-729
               

               
Cow position:
               
chr5:66257298-66257601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 55
               

               
Conread position:
               
426-748
               

               
Cow position:
               
chr5:55068374-55068691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
99, 20
               

               
Conread position:
               
426-791
               

               
Cow position:
               
chr5:45846040-45845669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 9
               

               
Conread position:
               
426-793
               

               
Cow position:
               
chr5:56523826-56524198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 181
               

               
Conread position:
               
426-793
               

               
Cow position:
               
chr5:57935461-57935084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 336
               

               
Conread position:
               
427-525
               

               
Cow position:
               
chr5:6670503-6670405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
427-526
               

               
Cow position:
               
chr5:39441691-39441789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
427-539
               

               
Cow position:
               
chr5:35684354-35684465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
427-547
               

               
Cow position:
               
chr5:3500454-3500333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
98, 117
               

               
Conread position:
               
427-547
               

               
Cow position:
               
chr5:5848806-5848686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
427-550
               

               
Cow position:
               
chr5:5812431-5812308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
427-550
               

               
Cow position:
               
chr5:24102381-24102507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
427-565
               

               
Cow position:
               
chr5:9430821-9430684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
427-565
               

               
Cow position:
               
chr5:20959009-20959150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
427-570
               

               
Cow position:
               
chr5:28807532-28807679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
427-592
               

               
Cow position:
               
chr5:59114559-59114732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
427-595
               

               
Cow position:
               
chr5:39242695-39242512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
427-595
               

               
Cow position:
               
chr5:41976190-41976017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
427-606
               

               
Cow position:
               
chr5:10109539-10109717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
152, 97
               

               
Conread position:
               
427-614
               

               
Cow position:
               
chr5:30950492-30950293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
427-625
               

               
Cow position:
               
chr5:41486921-41487126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
427-625
               

               
Cow position:
               
chr5:59779505-59779302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 78
               

               
Conread position:
               
427-625
               

               
Cow position:
               
chr5:59782106-59781903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 78
               

               
Conread position:
               
427-625
               

               
Cow position:
               
chr5:63305957-63305749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
427-626
               

               
Cow position:
               
chr5:60447898-60448104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 8
               

               
Conread position:
               
427-629
               

               
Cow position:
               
chr5:37758150-37757942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
98, 44
               

               
Conread position:
               
427-631
               

               
Cow position:
               
chr5:24919224-24919013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
427-632
               

               
Cow position:
               
chr5:12718907-12719118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 39
               

               
Conread position:
               
427-632
               

               
Cow position:
               
chr5:70402738-70402945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
94, 108
               

               
Conread position:
               
427-635
               

               
Cow position:
               
chr5:765376-765590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
427-635
               

               
Cow position:
               
chr5:12557749-12557540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
427-637
               

               
Cow position:
               
chr5:10853161-10852944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
98, 145
               

               
Conread position:
               
427-637
               

               
Cow position:
               
chr5:19978231-19978016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 13
               

               
Conread position:
               
427-637
               

               
Cow position:
               
chr5:30583004-30583221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
98, 156
               
UCSC Genome Browser

               
Conread position:
               
427-637
               

               
Cow position:
               
chr5:37255703-37255486 (view  custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
94, 0
               
UCSC Genome Browser

               
               
               
Conread position:
427-637

               
               
               
Cow position:
chr5:48765286-48765500 (view  custom track)

               
               
               
Alignm length:
215

               
               
               
Alignm identity:
156

               
               
               
Alignm E-value:
3e-34

               
               
               
Alignm gaps (pig, cow):
126, 0
UCSC Genome Browser

               
               
               
Conread position:
427-637

               
               
               
Cow position:
chr5:54337576-54337793 (view  custom track)

               
               
               
Alignm length:
218

               
               
               
Alignm identity:
157

               
               
               
Alignm E-value:
6e-31

               
               
               
Alignm gaps (pig, cow):
94, 0

               
               
               Conread position:427-655
               
               
               Cow position:chr5:75259481-75259716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:427-661
               
               
               Cow position:chr5:11976019-11975775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 136

               
               
               Conread position:427-662
               
               
               Cow position:chr5:41936141-41935902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):120, 19

               
               
               Conread position:427-667
               
               
               Cow position:chr5:60015575-60015823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:427-676
               
               
               Cow position:chr5:31103954-31104213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):93, 229

               
               
               Conread position:427-677
               
               
               Cow position:chr5:4166323-4166572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):94, 201

               
               
               Conread position:427-677
               
               
               Cow position:chr5:40270074-40269816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):98, 116

               
               
               Conread position:427-678
               
               
               Cow position:chr5:21937753-21937498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):74, 142

               
               
               Conread position:427-678
               
               
               Cow position:chr5:27007548-27007810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:427-679
               
               
               Cow position:chr5:11986506-11986243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:427-679
               
               
               Cow position:chr5:26133421-26133162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:427-679
               
               
               Cow position:chr5:28035376-28035622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):98, 24

               
               
               Conread position:427-679
               
               
               Cow position:chr5:28374684-28374437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:427-679
               
               
               Cow position:chr5:48238439-48238177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):105, 48

               
               
               Conread position:427-679
               
               
               Cow position:chr5:51293078-51292817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):94, 152

               
               
               Conread position:427-679
               
               
               Cow position:chr5:52243761-52243499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):93, 9

               
               
               Conread position:427-679
               
               
               Cow position:chr5:62427918-62428179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):98, 145

               
               
               Conread position:427-679
               
               
               Cow position:chr5:70127846-70128084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:427-680
               
               
               Cow position:chr5:3789901-3790165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:427-680
               
               
               Cow position:chr5:14832951-14832698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):94, 173

               
               
               Conread position:427-680
               
               
               Cow position:chr5:15088842-15089104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):106, 141

               
               
               Conread position:427-680
               
               
               Cow position:chr5:18404426-18404163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:427-680
               
               
               Cow position:chr5:26462305-26462566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):124, 19

               
               
               Conread position:427-680
               
               
               Cow position:chr5:32336396-32336145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 66

               
               
               Conread position:427-680
               
               
               Cow position:chr5:46023524-46023266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:427-680
               
               
               Cow position:chr5:46080602-46080344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:427-680
               
               
               Cow position:chr5:46130126-46129869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:427-680
               
               
               Cow position:chr5:46334690-46334941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):195, 73

               
               
               Conread position:427-680
               
               
               Cow position:chr5:48804768-48804505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):98, 144

               
               
               Conread position:427-680
               
               
               Cow position:chr5:49522381-49522645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:427-680
               
               
               Cow position:chr5:50645799-50645536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):98, 205

               
               
               Conread position:427-680
               
               
               Cow position:chr5:55684781-55685045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):94, 160

               
               
               Conread position:427-680
               
               
               Cow position:chr5:70593327-70593062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):94, 145

               
               
               Conread position:427-681
               
               
               Cow position:chr5:33471586-33471325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:427-687
               
               
               Cow position:chr5:41608967-41609219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):126, 91

               
               
               Conread position:427-688
               
               
               Cow position:chr5:67212034-67212304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:427-688
               
               
               Cow position:chr5:73070100-73070366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):98, 219

               
               
               Conread position:427-692
               
               
               Cow position:chr5:25729955-25729679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 186

               
               
               Conread position:427-692
               
               
               Cow position:chr5:70608648-70608925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):99, 63

               
               
               Conread position:427-692
               
               
               Cow position:chr5:72045993-72045720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 202

               
               
               Conread position:427-694
               
               
               Cow position:chr5:27179312-27179593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:427-702
               
               
               Cow position:chr5:15112577-15112289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:427-703
               
               
               Cow position:chr5:30176527-30176239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):94, 145

               
               
               Conread position:427-703
               
               
               Cow position:chr5:33180568-33180846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:427-710
               
               
               Cow position:chr5:36793682-36793980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):97, 226

               
               
               Conread position:427-711
               
               
               Cow position:chr5:29741880-29741586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:427-716
               
               
               Cow position:chr5:48828800-48829111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:427-721
               
               
               Cow position:chr5:46611431-46611143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):100, 205

               
               
               Conread position:427-723
               
               
               Cow position:chr5:14538996-14538701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):94, 185

               
               
               Conread position:427-723
               
               
               Cow position:chr5:21189895-21190204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):94, 145

               
               
               Conread position:427-723
               
               
               Cow position:chr5:27690406-27690102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):98, 19

               
               
               Conread position:427-723
               
               
               Cow position:chr5:29504758-29505065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):103, 235

               
               
               Conread position:427-723
               
               
               Cow position:chr5:31681914-31682221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 275

               
               
               Conread position:427-723
               
               
               Cow position:chr5:41531437-41531125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:427-723
               
               
               Cow position:chr5:45940960-45940657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):94, 190

               
               
               Conread position:427-723
               
               
               Cow position:chr5:46295014-46294707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):96, 138

               
               
               Conread position:427-723
               
               
               Cow position:chr5:63840491-63840187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):94, 83

               
               
               Conread position:427-724
               
               
               Cow position:chr5:50599719-50600014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 128

               
               
               Conread position:427-724
               
               
               Cow position:chr5:58246009-58246317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):98, 205

               
               
               Conread position:427-724
               
               
               Cow position:chr5:58770196-58769887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):98, 60

               
               
               Conread position:427-724
               
               
               Cow position:chr5:62172059-62172372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):99, 234

               
               
               Conread position:427-724
               
               
               Cow position:chr5:67462629-67462926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):238, 188

               
               
               Conread position:427-724
               
               
               Cow position:chr5:68082305-68082013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:427-724
               
               
               Cow position:chr5:72314804-72314494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):100, 276

               
               
               Conread position:427-724
               
               
               Cow position:chr5:76097812-76097508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):98, 246

               
               
               Conread position:427-726
               
               
               Cow position:chr5:32153663-32153356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 280

               
               
               Conread position:427-732
               
               
               Cow position:chr5:411042-410724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):98, 145

               
               
               Conread position:427-732
               
               
               Cow position:chr5:2428074-2427756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:2918133-2918450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:5879663-5879353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):100, 91

               
               
               Conread position:427-732
               
               
               Cow position:chr5:7397199-7397512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):98, 145

               
               
               Conread position:427-732
               
               
               Cow position:chr5:8178835-8179149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:9873913-9874236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:10922837-10923150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:427-732
               
               
               Cow position:chr5:14557573-14557267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):139, 107

               
               
               Conread position:427-732
               
               
               Cow position:chr5:20410985-20410667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:21944034-21944363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:29771171-29771482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 290

               
               
               Conread position:427-732
               
               
               Cow position:chr5:30276348-30276663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:32378525-32378819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):114, 105

               
               
               Conread position:427-732
               
               
               Cow position:chr5:33792282-33792587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):94, 133

               
               
               Conread position:427-732
               
               
               Cow position:chr5:35209819-35209510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 148

               
               
               Conread position:427-732
               
               
               Cow position:chr5:37586389-37586072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):98, 207

               
               
               Conread position:427-732
               
               
               Cow position:chr5:37645718-37646040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):102, 229

               
               
               Conread position:427-732
               
               
               Cow position:chr5:39094207-39094521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 28

               
               
               Conread position:427-732
               
               
               Cow position:chr5:41532522-41532199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):98, 41

               
               
               Conread position:427-732
               
               
               Cow position:chr5:44054382-44054069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 245

               
               
               Conread position:427-732
               
               
               Cow position:chr5:45999368-45999054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:46104287-46103974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):97, 221

               
               
               Conread position:427-732
               
               
               Cow position:chr5:46122675-46122384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):190, 48

               
               
               Conread position:427-732
               
               
               Cow position:chr5:47750603-47750918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:47871398-47871076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:48972244-48972563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:49558815-49559135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:55176545-55176856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 118

               
               
               Conread position:427-732
               
               
               Cow position:chr5:55428209-55428528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:427-732
               
               
               Cow position:chr5:56467358-56467666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):100, 50

               
               
               Conread position:427-732
               
               
               Cow position:chr5:58004898-58005217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):100, 60

               
               
               Conread position:427-732
               
               
               Cow position:chr5:59339471-59339789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):98, 137

               
               
               Conread position:427-732
               
               
               Cow position:chr5:70102152-70101841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):122, 133

               
               
               Conread position:427-733
               
               
               Cow position:chr5:9894471-9894162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 76

               
               
               Conread position:427-733
               
               
               Cow position:chr5:51151710-51151390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:427-734
               
               
               Cow position:chr5:58793961-58793649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 55

               
               
               Conread position:427-736
               
               
               Cow position:chr5:46235153-46234831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):98, 227

               
               
               Conread position:427-740
               
               
               Cow position:chr5:7175976-7176303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 205

               
               
               Conread position:427-742
               
               
               Cow position:chr5:28330676-28330354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 216

               
               
               Conread position:427-746
               
               
               Cow position:chr5:66815928-66815587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:249
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):100, 212

               
               
               Conread position:427-747
               
               
               Cow position:chr5:75829076-75828756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):120, 51

               
               
               Conread position:427-753
               
               
               Cow position:chr5:14415423-14415763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:427-753
               
               
               Cow position:chr5:31433930-31434250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 101

               
               
               Conread position:427-753
               
               
               Cow position:chr5:35145003-35145339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 219

               
               
               Conread position:427-753
               
               
               Cow position:chr5:54405241-54404901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 111

               
               
               Conread position:427-756
               
               
               Cow position:chr5:16894116-16893780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 123

               
               
               Conread position:427-756
               
               
               Cow position:chr5:26378011-26377677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 264

               
               
               Conread position:427-757
               
               
               Cow position:chr5:44752660-44752323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 147

               
               
               Conread position:427-761
               
               
               Cow position:chr5:18573823-18574171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 289

               
               
               Conread position:427-761
               
               
               Cow position:chr5:27154677-27155024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):101, 81

               
               
               Conread position:427-761
               
               
               Cow position:chr5:62107836-62107493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 50

               
               
               Conread position:427-762
               
               
               Cow position:chr5:39258207-39258510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):248, 70

               
               
               Conread position:427-765
               
               
               Cow position:chr5:59303614-59303278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:427-766
               
               
               Cow position:chr5:6086912-6086555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:427-769
               
               
               Cow position:chr5:52165526-52165173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 335

               
               
               Conread position:427-774
               
               
               Cow position:chr5:64844464-64844118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 205

               
               
               Conread position:427-775
               
               
               Cow position:chr5:2500540-2500173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):115, 352

               
               
               Conread position:427-775
               
               
               Cow position:chr5:24485757-24485428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):261, 118

               
               
               Conread position:427-783
               
               
               Cow position:chr5:17087370-17087006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):95, 7

               
               
               Conread position:427-790
               
               
               Cow position:chr5:64823651-64823290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:427-792
               
               
               Cow position:chr5:34442140-34441765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 216

               
               
               Conread position:427-792
               
               
               Cow position:chr5:43923496-43923129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 288

               
               
               Conread position:427-793
               
               
               Cow position:chr5:6044939-6045318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 347

               
               
               Conread position:427-793
               
               
               Cow position:chr5:17027751-17028119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):105, 267

               
               
               Conread position:427-793
               
               
               Cow position:chr5:26467275-26467650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 151

               
               
               Conread position:427-793
               
               
               Cow position:chr5:28927944-28927562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 351

               
               
               Conread position:427-793
               
               
               Cow position:chr5:31145126-31144763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):103, 26

               
               
               Conread position:427-793
               
               
               Cow position:chr5:35826254-35826626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 51

               
               
               Conread position:427-793
               
               
               Cow position:chr5:57074663-57074307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 87

               
               
               Conread position:427-793
               
               
               Cow position:chr5:62827101-62826728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:427-796
               
               
               Cow position:chr5:10261589-10261206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):94, 288

               
               
               Conread position:427-799
               
               
               Cow position:chr5:34887545-34887169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 152

               
               
               Conread position:427-799
               
               
               Cow position:chr5:38683018-38683389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:427-799
               
               
               Cow position:chr5:47756421-47756806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):94, 292

               
               
               Conread position:427-800
               
               
               Cow position:chr5:32141046-32140677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:427-801
               
               
               Cow position:chr5:8821339-8820978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):187, 95

               
               
               Conread position:427-801
               
               
               Cow position:chr5:64321407-64321788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:274
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:427-804
               
               
               Cow position:chr5:19470530-19470153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 309

               
               
               Conread position:427-809
               
               
               Cow position:chr5:37377521-37377905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 220

               
               
               Conread position:427-810
               
               
               Cow position:chr5:31097152-31096763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):93, 208

               
               
               Conread position:428-588
               
               
               Cow position:chr5:44447716-44447547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:428-592
               
               
               Cow position:chr5:17645235-17645068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:428-662
               
               
               Cow position:chr5:21005020-21004779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):93, 193

               
               
               Conread position:428-771
               
               
               Cow position:chr5:42845946-42845589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 148

               
               
               Conread position:428-796
               
               
               Cow position:chr5:7763732-7764101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:429-527
               
               
               Cow position:chr5:53835349-53835447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:429-565
               
               
               Cow position:chr5:10417668-10417525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:429-565
               
               
               Cow position:chr5:54951438-54951295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:429-588
               
               
               Cow position:chr5:60215449-60215612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:429-632
               
               
               Cow position:chr5:55654390-55654600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:429-664
               
               
               Cow position:chr5:1461498-1461737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:429-664
               
               
               Cow position:chr5:62268239-62268485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:429-675
               
               
               Cow position:chr5:62272396-62272146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 131

               
               
               Conread position:429-679
               
               
               Cow position:chr5:4600077-4599816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:429-679
               
               
               Cow position:chr5:14278825-14279086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:429-679
               
               
               Cow position:chr5:57335684-57335423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 205

               
               
               Conread position:429-679
               
               
               Cow position:chr5:58516449-58516188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:429-711
               
               
               Cow position:chr5:51746897-51747189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:429-723
               
               
               Cow position:chr5:446174-446481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:429-723
               
               
               Cow position:chr5:2279096-2278789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):91, 275

               
               
               Conread position:429-723
               
               
               Cow position:chr5:5924303-5923996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:429-723
               
               
               Cow position:chr5:6059952-6059645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:429-723
               
               
               Cow position:chr5:12134261-12134568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):92, 143

               
               
               Conread position:429-723
               
               
               Cow position:chr5:35498187-35498494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 143

               
               
               Conread position:429-723
               
               
               Cow position:chr5:52239587-52239280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):91, 275

               
               
               Conread position:429-723
               
               
               Cow position:chr5:59473676-59473983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:429-724
               
               
               Cow position:chr5:43437261-43436954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:429-724
               
               
               Cow position:chr5:55631744-55632052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 206

               
               
               Conread position:429-730
               
               
               Cow position:chr5:21617120-21617421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:429-731
               
               
               Cow position:chr5:6584850-6584539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:429-732
               
               
               Cow position:chr5:29969288-29969604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 205

               
               
               Conread position:429-732
               
               
               Cow position:chr5:35762945-35763241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 193

               
               
               Conread position:429-732
               
               
               Cow position:chr5:43984762-43985071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):96, 217

               
               
               Conread position:429-734
               
               
               Cow position:chr5:10772150-10771836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):91, 306

               
               
               Conread position:429-734
               
               
               Cow position:chr5:29255534-29255217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 309

               
               
               Conread position:429-734
               
               
               Cow position:chr5:57987158-57987475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 307

               
               
               Conread position:429-768
               
               
               Cow position:chr5:44994390-44994036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 150

               
               
               Conread position:429-798
               
               
               Cow position:chr5:11780188-11779810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 205

               
               
               Conread position:429-798
               
               
               Cow position:chr5:42508121-42508499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 309

               
               
               Conread position:430-713
               
               
               Cow position:chr5:41129410-41129707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):88, 222

               
               
               Conread position:431-628
               
               
               Cow position:chr5:17384445-17384240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):79, 63

               
               
               Conread position:431-681
               
               
               Cow position:chr5:60901126-60901373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:431-732
               
               
               Cow position:chr5:3281210-3280905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:431-769
               
               
               Cow position:chr5:17631216-17630874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):101, 275

               
               
               Conread position:431-793
               
               
               Cow position:chr5:20783284-20783644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):96, 73

               
               
               Conread position:432-633
               
               
               Cow position:chr5:8819667-8819461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):92, 109

               
               
               Conread position:433-561
               
               
               Cow position:chr5:75726144-75726009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:433-679
               
               
               Cow position:chr5:75725895-75725640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):87, 137

               
               
               Conread position:433-809
               
               
               Cow position:chr5:3453800-3453414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):87, 151

               
               
               Conread position:435-583
               
               
               Cow position:chr5:56137237-56137388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):114, 7

               
               
               Conread position:435-687
               
               
               Cow position:chr5:23647348-23647089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:435-687
               
               
               Cow position:chr5:51315187-51314923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 252

               
               
               Conread position:435-694
               
               
               Cow position:chr5:70035060-70035327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:435-724
               
               
               Cow position:chr5:6219764-6220062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 210

               
               
               Conread position:435-741
               
               
               Cow position:chr5:31730847-31731168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):90, 225

               
               
               Conread position:435-762
               
               
               Cow position:chr5:47313134-47313473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 198

               
               
               Conread position:435-765
               
               
               Cow position:chr5:360283-359940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:435-771
               
               
               Cow position:chr5:45226167-45225817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:435-793
               
               
               Cow position:chr5:39936764-39937140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 140

               
               
               Conread position:436-551
               
               
               Cow position:chr5:73551398-73551280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:436-565
               
               
               Cow position:chr5:43446495-43446359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:436-633
               
               
               Cow position:chr5:40673048-40673248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):88, 146

               
               
               Conread position:436-679
               
               
               Cow position:chr5:64650790-64651044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:436-680
               
               
               Cow position:chr5:38663407-38663660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 196

               
               
               Conread position:436-723
               
               
               Cow position:chr5:29240131-29240431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:436-723
               
               
               Cow position:chr5:45837506-45837806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):84, 268

               
               
               Conread position:438-632
               
               
               Cow position:chr5:47347019-47347220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:438-723
               
               
               Cow position:chr5:35807285-35806987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:439-625
               
               
               Cow position:chr5:40559502-40559311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 177

               
               
               Conread position:439-674
               
               
               Cow position:chr5:47846784-47847027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:439-680
               
               
               Cow position:chr5:57613387-57613139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 59

               
               
               Conread position:439-680
               
               
               Cow position:chr5:60947891-60948132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:439-680
               
               
               Cow position:chr5:63967976-63967734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 57

               
               
               Conread position:439-732
               
               
               Cow position:chr5:28946389-28946096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:439-748
               
               
               Cow position:chr5:4710479-4710162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 166

               
               
               Conread position:439-765
               
               
               Cow position:chr5:52645415-52645077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):81, 205

               
               
               Conread position:440-721
               
               
               Cow position:chr5:69099193-69099487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:440-734
               
               
               Cow position:chr5:20971412-20971108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 192

               
               
               Conread position:441-674
               
               
               Cow position:chr5:52269521-52269278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):28, 137

               
               
               Conread position:441-709
               
               
               Cow position:chr5:61725638-61725917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):84, 56

               
               
               Conread position:441-723
               
               
               Cow position:chr5:43330026-43329736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):80, 207

               
               
               Conread position:441-732
               
               
               Cow position:chr5:20344835-20345128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):6, 85

               
               
               Conread position:442-680
               
               
               Cow position:chr5:57787045-57787286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 205

               
               
               Conread position:442-683
               
               
               Cow position:chr5:48535476-48535727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:442-771
               
               
               Cow position:chr5:26990066-26990400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 49

               
               
               Conread position:442-771
               
               
               Cow position:chr5:43858760-43858428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 172

               
               
               Conread position:443-625
               
               
               Cow position:chr5:43677007-43676819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 158

               
               
               Conread position:443-679
               
               
               Cow position:chr5:45965983-45965738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 189

               
               
               Conread position:443-723
               
               
               Cow position:chr5:75244617-75244330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):106, 84

               
               
               Conread position:443-769
               
               
               Cow position:chr5:62397024-62397364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 192

               
               
               Conread position:443-805
               
               
               Cow position:chr5:39361437-39361067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 295

               
               
               Conread position:444-732
               
               
               Cow position:chr5:44797045-44796765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):107, 188

               
               
               Conread position:444-732
               
               
               Cow position:chr5:50722716-50723015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):16, 161

               
               
               Conread position:444-732
               
               
               Cow position:chr5:67913450-67913750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:445-679
               
               
               Cow position:chr5:1641568-1641813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:445-679
               
               
               Cow position:chr5:51993546-51993798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:445-732
               
               
               Cow position:chr5:28224125-28224420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:445-757
               
               
               Cow position:chr5:34915812-34916128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 201

               
               
               Conread position:446-693
               
               
               Cow position:chr5:62579974-62579737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):172, 85

               
               
               Conread position:446-695
               
               
               Cow position:chr5:53825198-53825443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:446-723
               
               
               Cow position:chr5:12212501-12212211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 258

               
               
               Conread position:447-679
               
               
               Cow position:chr5:37084371-37084614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:447-711
               
               
               Cow position:chr5:24087358-24087092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 86

               
               
               Conread position:447-765
               
               
               Cow position:chr5:63647794-63647472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:450-732
               
               
               Cow position:chr5:56234150-56233862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:453-677
               
               
               Cow position:chr5:31437331-31437101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:453-680
               
               
               Cow position:chr5:66119577-66119336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:453-732
               
               
               Cow position:chr5:49116657-49116365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:453-739
               
               
               Cow position:chr5:38831316-38831022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):72, 195

               
               
               Conread position:453-752
               
               
               Cow position:chr5:37942114-37941804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):67, 284

               
               
               Conread position:453-762
               
               
               Cow position:chr5:42747841-42748157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):96, 51

               
               
               Conread position:454-679
               
               
               Cow position:chr5:11618462-11618226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:454-680
               
               
               Cow position:chr5:46052124-46051886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 110

               
               
               Conread position:454-723
               
               
               Cow position:chr5:366305-366023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 250

               
               
               Conread position:454-762
               
               
               Cow position:chr5:60715675-60715364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):64, 214

               
               
               Conread position:455-604
               
               
               Cow position:chr5:47857305-47857465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:455-723
               
               
               Cow position:chr5:472944-472663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 249

               
               
               Conread position:455-723
               
               
               Cow position:chr5:34249299-34249579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:455-724
               
               
               Cow position:chr5:43990074-43990356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 225

               
               
               Conread position:455-724
               
               
               Cow position:chr5:55942720-55942438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:455-809
               
               
               Cow position:chr5:37271332-37271696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):67, 283

               
               
               Conread position:456-637
               
               
               Cow position:chr5:47036771-47036959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:456-793
               
               
               Cow position:chr5:27103109-27102770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:458-765
               
               
               Cow position:chr5:4797629-4797316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):67, 180

               
               
               Conread position:459-727
               
               
               Cow position:chr5:15462410-15462676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 74

               
               
               Conread position:460-703
               
               
               Cow position:chr5:53735873-53736123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 152

               
               
               Conread position:462-679
               
               
               Cow position:chr5:41229399-41229623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 173

               
               
               Conread position:462-692
               
               
               Cow position:chr5:33347951-33348182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 186

               
               
               Conread position:462-723
               
               
               Cow position:chr5:63033061-63033329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):62, 179

               
               
               Conread position:462-786
               
               
               Cow position:chr5:57113674-57113994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 73

               
               
               Conread position:462-796
               
               
               Cow position:chr5:3281519-3281862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 145

               
               
               Conread position:463-732
               
               
               Cow position:chr5:45170050-45170331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):62, 225

               
               
               Conread position:464-721
               
               
               Cow position:chr5:18113882-18113619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:464-809
               
               
               Cow position:chr5:10536242-10536601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 119

               
               
               Conread position:465-679
               
               
               Cow position:chr5:20341615-20341390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 118

               
               
               Conread position:465-679
               
               
               Cow position:chr5:35280783-35281008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:465-679
               
               
               Cow position:chr5:58037571-58037346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:465-682
               
               
               Cow position:chr5:15362760-15362986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:465-717
               
               
               Cow position:chr5:54875986-54875728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 144

               
               
               Conread position:465-732
               
               
               Cow position:chr5:18702518-18702243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:465-732
               
               
               Cow position:chr5:20555058-20554781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:465-734
               
               
               Cow position:chr5:18716440-18716165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 150

               
               
               Conread position:465-791
               
               
               Cow position:chr5:65941561-65941228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:465-793
               
               
               Cow position:chr5:65752550-65752884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 295

               
               
               Conread position:465-798
               
               
               Cow position:chr5:37819881-37820224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 274

               
               
               Conread position:466-628
               
               
               Cow position:chr5:58208444-58208610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 98

               
               
               Conread position:466-676
               
               
               Cow position:chr5:38273762-38273986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 114

               
               
               Conread position:466-704
               
               
               Cow position:chr5:71794258-71794497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:466-732
               
               
               Cow position:chr5:64392846-64393124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:466-763
               
               
               Cow position:chr5:5111385-5111074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 206

               
               
               Conread position:467-680
               
               
               Cow position:chr5:4551825-4552048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:467-732
               
               
               Cow position:chr5:50483169-50482898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):54, 197

               
               
               Conread position:468-723
               
               
               Cow position:chr5:53055859-53055606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):52, 133

               
               
               Conread position:468-798
               
               
               Cow position:chr5:262134-261795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 270

               
               
               Conread position:469-711
               
               
               Cow position:chr5:55138780-55139035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:470-679
               
               
               Cow position:chr5:24918200-24918420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:470-732
               
               
               Cow position:chr5:40831009-40831277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 144

               
               
               Conread position:470-746
               
               
               Cow position:chr5:65887318-65887023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):55, 234

               
               
               Conread position:471-662
               
               
               Cow position:chr5:42671331-42671145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):104, 60

               
               
               Conread position:471-792
               
               
               Cow position:chr5:6504169-6503858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:471-793
               
               
               Cow position:chr5:50533683-50533360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:472-800
               
               
               Cow position:chr5:63964483-63964138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 281

               
               
               Conread position:473-637
               
               
               Cow position:chr5:22312166-22312332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):61, 84

               
               
               Conread position:474-681
               
               
               Cow position:chr5:19751558-19751758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):75, 48

               
               
               Conread position:474-724
               
               
               Cow position:chr5:66112456-66112196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:474-764
               
               
               Cow position:chr5:72149951-72150248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):68, 162

               
               
               Conread position:476-725
               
               
               Cow position:chr5:33661556-33661816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 211

               
               
               Conread position:477-753
               
               
               Cow position:chr5:3491912-3492185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):76, 38

               
               
               Conread position:477-798
               
               
               Cow position:chr5:46721182-46721510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:478-687
               
               
               Cow position:chr5:70050457-70050675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):16, 195

               
               
               Conread position:478-732
               
               
               Cow position:chr5:37653984-37654251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 155

               
               
               Conread position:478-732
               
               
               Cow position:chr5:68604557-68604824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:478-747
               
               
               Cow position:chr5:33081086-33080808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):47, 102

               
               
               Conread position:479-732
               
               
               Cow position:chr5:50839553-50839816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 97

               
               
               Conread position:481-675
               
               
               Cow position:chr5:12468442-12468241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):68, 149

               
               
               Conread position:481-815
               
               
               Cow position:chr5:59443544-59443199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:482-679
               
               
               Cow position:chr5:23666550-23666346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:484-729
               
               
               Cow position:chr5:72035375-72035123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:487-711
               
               
               Cow position:chr5:63566019-63566257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:487-721
               
               
               Cow position:chr5:29366722-29366966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:487-724
               
               
               Cow position:chr5:62173386-62173631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 181

               
               
               Conread position:487-733
               
               
               Cow position:chr5:63917694-63917443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:487-748
               
               
               Cow position:chr5:43474567-43474832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:487-765
               
               
               Cow position:chr5:9090307-9090020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 273

               
               
               Conread position:488-748
               
               
               Cow position:chr5:50950267-50950539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:489-725
               
               
               Cow position:chr5:61576255-61576503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:492-793
               
               
               Cow position:chr5:63987729-63987421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:492-800
               
               
               Cow position:chr5:60952380-60952692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:493-712
               
               
               Cow position:chr5:52905769-52905547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 81

               
               
               Conread position:493-732
               
               
               Cow position:chr5:27420002-27419763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 151

               
               
               Conread position:495-757
               
               
               Cow position:chr5:57327509-57327791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 44

               
               
               Conread position:496-745
               
               
               Cow position:chr5:59298237-59297977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 212

               
               
               Conread position:497-732
               
               
               Cow position:chr5:40889560-40889319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):30, 224

               
               
               Conread position:501-776
               
               
               Cow position:chr5:4507234-4506940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:504-745
               
               
               Cow position:chr5:65601193-65601439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 229

               
               
               Conread position:505-723
               
               
               Cow position:chr5:61488377-61488151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 59

               
               
               Conread position:505-732
               
               
               Cow position:chr5:30808886-30808648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:505-762
               
               
               Cow position:chr5:17999765-17999493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 260

               
               
               Conread position:506-753
               
               
               Cow position:chr5:42063935-42064193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 122

               
               
               Conread position:506-769
               
               
               Cow position:chr5:42676969-42677237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):42, 137

               
               
               Conread position:507-779
               
               
               Cow position:chr5:63992431-63992157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 140

               
               
               Conread position:508-729
               
               
               Cow position:chr5:64139297-64139529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:510-742
               
               
               Cow position:chr5:63388534-63388773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 186

               
               
               Conread position:516-746
               
               
               Cow position:chr5:61600157-61600402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:517-758
               
               
               Cow position:chr5:6575836-6575596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):155, 8

               
               
               Conread position:519-732
               
               
               Cow position:chr5:4617123-4617333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 122

               
               
               Conread position:520-732
               
               
               Cow position:chr5:61656355-61656571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:520-770
               
               
               Cow position:chr5:62870286-62870038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 166

               
               
               Conread position:520-793
               
               
               Cow position:chr5:31640176-31640449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 168

               
               
               Conread position:520-793
               
               
               Cow position:chr5:50975636-50975926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 257

               
               
               Conread position:520-800
               
               
               Cow position:chr5:34049858-34050149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 242

               
               
               Conread position:521-793
               
               
               Cow position:chr5:28302990-28302721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 163

               
               
               Conread position:522-757
               
               
               Cow position:chr5:65588463-65588695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):165, 42

               
               
               Conread position:528-793
               
               
               Cow position:chr5:67243681-67243945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 190

               
               
               Conread position:533-757
               
               
               Cow position:chr5:54064541-54064772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:535-721
               
               
               Cow position:chr5:16025692-16025502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:535-732
               
               
               Cow position:chr5:72903460-72903263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):147, 98

               
               
               Conread position:535-747
               
               
               Cow position:chr5:43738184-43737969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):153, 102

               
               
               Conread position:535-748
               
               
               Cow position:chr5:11668414-11668199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:536-690
               
               
               Cow position:chr5:34923342-34923190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 62

               
               
               Conread position:536-768
               
               
               Cow position:chr5:42744562-42744789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):152, 71

               
               
               Conread position:538-717
               
               
               Cow position:chr5:33537661-33537840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):172, 149

               
               
               Conread position:540-730
               
               
               Cow position:chr5:12563232-12563042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:541-765
               
               
               Cow position:chr5:30639080-30638860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:541-769
               
               
               Cow position:chr5:51999989-52000227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 23

               
               
               Conread position:542-719
               
               
               Cow position:chr5:66281019-66280838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:543-765
               
               
               Cow position:chr5:49362215-49361989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:544-756
               
               
               Cow position:chr5:26262897-26262683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 57

               
               
               Conread position:545-687
               
               
               Cow position:chr5:25935728-25935872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:545-793
               
               
               Cow position:chr5:8024414-8024169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):143, 33

               
               
               Conread position:548-672
               
               
               Cow position:chr5:32087940-32087812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:548-687
               
               
               Cow position:chr5:27306099-27306240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 101

               
               
               Conread position:548-687
               
               
               Cow position:chr5:57626590-57626726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:548-710
               
               
               Cow position:chr5:6033019-6033184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:548-715
               
               
               Cow position:chr5:26541077-26541241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):127, 10

               
               
               Conread position:548-716
               
               
               Cow position:chr5:2851095-2851268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:548-719
               
               
               Cow position:chr5:38832898-38833076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:548-722
               
               
               Cow position:chr5:32975770-32975595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:548-722
               
               
               Cow position:chr5:66297019-66297194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):113, 98

               
               
               Conread position:548-723
               
               
               Cow position:chr5:36868526-36868695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:548-728
               
               
               Cow position:chr5:54530763-54530945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):76, 150

               
               
               Conread position:548-729
               
               
               Cow position:chr5:35684715-35684899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 151

               
               
               Conread position:548-730
               
               
               Cow position:chr5:16938227-16938043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):126, 67

               
               
               Conread position:548-732
               
               
               Cow position:chr5:5257516-5257327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 130

               
               
               Conread position:548-732
               
               
               Cow position:chr5:11229893-11229703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:548-732
               
               
               Cow position:chr5:28926404-28926215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:548-732
               
               
               Cow position:chr5:37814404-37814588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):80, 74

               
               
               Conread position:548-732
               
               
               Cow position:chr5:56028749-56028562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:548-745
               
               
               Cow position:chr5:20127835-20128036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:548-747
               
               
               Cow position:chr5:58144824-58144617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:548-748
               
               
               Cow position:chr5:36854993-36855190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):137, 85

               
               
               Conread position:548-756
               
               
               Cow position:chr5:40928192-40927988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):140, 26

               
               
               Conread position:548-756
               
               
               Cow position:chr5:71454815-71454610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 142

               
               
               Conread position:548-757
               
               
               Cow position:chr5:12709667-12709882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:548-757
               
               
               Cow position:chr5:56433582-56433798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:548-757
               
               
               Cow position:chr5:56820479-56820268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):140, 47

               
               
               Conread position:548-757
               
               
               Cow position:chr5:72007072-72006860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):140, 91

               
               
               Conread position:548-762
               
               
               Cow position:chr5:4032208-4031993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):132, 60

               
               
               Conread position:548-762
               
               
               Cow position:chr5:24996443-24996223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:548-762
               
               
               Cow position:chr5:75437116-75436888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:548-765
               
               
               Cow position:chr5:2309784-2309554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:548-765
               
               
               Cow position:chr5:54350580-54350361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):135, 85

               
               
               Conread position:548-768
               
               
               Cow position:chr5:73079993-73080205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):178, 47

               
               
               Conread position:548-769
               
               
               Cow position:chr5:1766564-1766345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 141

               
               
               Conread position:548-769
               
               
               Cow position:chr5:3771627-3771854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:548-770
               
               
               Cow position:chr5:10789897-10789668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 132

               
               
               Conread position:548-771
               
               
               Cow position:chr5:71504909-71505132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):140, 10

               
               
               Conread position:548-775
               
               
               Cow position:chr5:28324126-28324365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 224

               
               
               Conread position:548-776
               
               
               Cow position:chr5:18090508-18090736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):131, 71

               
               
               Conread position:548-778
               
               
               Cow position:chr5:40357089-40356849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 56

               
               
               Conread position:548-789
               
               
               Cow position:chr5:30253526-30253768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):140, 16

               
               
               Conread position:548-789
               
               
               Cow position:chr5:72310495-72310730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):183, 89

               
               
               Conread position:548-791
               
               
               Cow position:chr5:56070634-56070881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:548-793
               
               
               Cow position:chr5:9859937-9859687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:548-793
               
               
               Cow position:chr5:30844892-30845137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:548-793
               
               
               Cow position:chr5:34300706-34300943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):16, 65

               
               
               Conread position:548-793
               
               
               Cow position:chr5:41164869-41165112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 99

               
               
               Conread position:548-793
               
               
               Cow position:chr5:43929953-43929711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):140, 91

               
               
               Conread position:548-799
               
               
               Cow position:chr5:17063313-17063056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):70, 215

               
               
               Conread position:548-800
               
               
               Cow position:chr5:41303310-41303055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:548-807
               
               
               Cow position:chr5:37646771-37646506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):16, 118

               
               
               Conread position:548-878
               
               
               Cow position:chr5:37714124-37713781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):67, 311

               
               
               Conread position:549-712
               
               
               Cow position:chr5:5848405-5848244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):139, 73

               
               
               Conread position:549-732
               
               
               Cow position:chr5:28229939-28230120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 117

               
               
               Conread position:549-751
               
               
               Cow position:chr5:35969324-35969523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):139, 148

               
               
               Conread position:550-723
               
               
               Cow position:chr5:64176338-64176160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:551-705
               
               
               Cow position:chr5:61455538-61455698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:551-716
               
               
               Cow position:chr5:14703184-14703016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 91

               
               
               Conread position:551-734
               
               
               Cow position:chr5:37366681-37366868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):83, 177

               
               
               Conread position:551-757
               
               
               Cow position:chr5:32963845-32963637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:551-771
               
               
               Cow position:chr5:51490970-51490750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:551-791
               
               
               Cow position:chr5:53835498-53835739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):137, 125

               
               
               Conread position:551-793
               
               
               Cow position:chr5:22243001-22242748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):75, 26

               
               
               Conread position:551-793
               
               
               Cow position:chr5:60126157-60126397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):137, 114

               
               
               Conread position:551-796
               
               
               Cow position:chr5:68871976-68872222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 38

               
               
               Conread position:551-800
               
               
               Cow position:chr5:64137035-64137287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):128, 211

               
               
               Conread position:551-806
               
               
               Cow position:chr5:56135185-56134928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):125, 148

               
               
               Conread position:552-733
               
               
               Cow position:chr5:46323027-46322843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:552-775
               
               
               Cow position:chr5:74858358-74858585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):135, 157

               
               
               Conread position:553-758
               
               
               Cow position:chr5:35235923-35235714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):124, 145

               
               
               Conread position:553-799
               
               
               Cow position:chr5:1247062-1247296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):179, 129

               
               
               Conread position:554-680
               
               
               Cow position:chr5:4280251-4280374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:554-727
               
               
               Cow position:chr5:24642935-24642765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):134, 99

               
               
               Conread position:554-732
               
               
               Cow position:chr5:55967096-55966913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:554-732
               
               
               Cow position:chr5:71158477-71158295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 87

               
               
               Conread position:554-765
               
               
               Cow position:chr5:45803847-45804062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 65

               
               
               Conread position:555-733
               
               
               Cow position:chr5:48154685-48154505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):121, 67

               
               
               Conread position:556-760
               
               
               Cow position:chr5:29212737-29212940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):118, 70

               
               
               Conread position:556-800
               
               
               Cow position:chr5:11427453-11427202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 202

               
               
               Conread position:557-757
               
               
               Cow position:chr5:45036811-45037015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:558-724
               
               
               Cow position:chr5:62142460-62142628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 149

               
               
               Conread position:558-732
               
               
               Cow position:chr5:40039980-40039804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):64, 98

               
               
               Conread position:558-732
               
               
               Cow position:chr5:43395347-43395174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):124, 44

               
               
               Conread position:558-732
               
               
               Cow position:chr5:47547926-47547752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 24

               
               
               Conread position:558-756
               
               
               Cow position:chr5:18898774-18898969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:558-793
               
               
               Cow position:chr5:21964084-21964313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:559-753
               
               
               Cow position:chr5:57271473-57271275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):59, 81

               
               
               Conread position:559-757
               
               
               Cow position:chr5:458273-458485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:560-765
               
               
               Cow position:chr5:51053855-51053649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):128, 137

               
               
               Conread position:560-801
               
               
               Cow position:chr5:7044918-7044671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 201

               
               
               Conread position:563-708
               
               
               Cow position:chr5:35449049-35449195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:563-711
               
               
               Cow position:chr5:24837150-24837001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:563-793
               
               
               Cow position:chr5:8994770-8994541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):170, 193

               
               
               Conread position:564-680
               
               
               Cow position:chr5:54086332-54086445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:564-747
               
               
               Cow position:chr5:57736911-57737088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):168, 69

               
               
               Conread position:564-798
               
               
               Cow position:chr5:15426321-15426569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 146

               
               
               Conread position:566-757
               
               
               Cow position:chr5:56518411-56518217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 188

               
               
               Conread position:567-746
               
               
               Cow position:chr5:45409125-45409305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:567-770
               
               
               Cow position:chr5:9390335-9390551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):60, 202

               
               
               Conread position:568-757
               
               
               Cow position:chr5:71578975-71579169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:569-732
               
               
               Cow position:chr5:57575567-57575735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:569-762
               
               
               Cow position:chr5:75230485-75230677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 71

               
               
               Conread position:574-734
               
               
               Cow position:chr5:48010040-48009881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):114, 65

               
               
               Conread position:577-732
               
               
               Cow position:chr5:4220790-4220950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:577-732
               
               
               Cow position:chr5:34561818-34561978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:577-732
               
               
               Cow position:chr5:74019961-74019805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):106, 18

               
               
               Conread position:577-733
               
               
               Cow position:chr5:50870351-50870513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:577-793
               
               
               Cow position:chr5:69461144-69461357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):111, 149

               
               
               Conread position:579-742
               
               
               Cow position:chr5:1678211-1678374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 60

               
               
               Conread position:579-747
               
               
               Cow position:chr5:50215747-50215571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:581-757
               
               
               Cow position:chr5:17644842-17644661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:583-793
               
               
               Cow position:chr5:6670382-6670169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:586-723
               
               
               Cow position:chr5:66281230-66281369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:586-757
               
               
               Cow position:chr5:39242371-39242204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):103, 47

               
               
               Conread position:594-783
               
               
               Cow position:chr5:45026091-45025902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 126

               
               
               Conread position:598-805
               
               
               Cow position:chr5:41010166-41009958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:600-793
               
               
               Cow position:chr5:30950087-30949891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):37, 165

               
               
               Conread position:601-791
               
               
               Cow position:chr5:30629324-30629137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):87, 151

               
               
               Conread position:622-770
               
               
               Cow position:chr5:66972282-66972434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 133
Show alignments to all cow chromosomes.