Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-321 |
| Cow position: | chr10:50527809-50527513 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 130, 33 |
| Conread position: | 3-357 |
| Cow position: | chr10:10223356-10223708 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 3-372 |
| Cow position: | chr10:29495903-29495537 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 63 |
| Conread position: | 3-374 |
| Cow position: | chr10:12537914-12537551 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 3-387 |
| Cow position: | chr10:26023395-26023778 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 56 |
| Conread position: | 5-368 |
| Cow position: | chr10:4908941-4909302 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 5-383 |
| Cow position: | chr10:17179417-17179034 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 87, 25 |
| Conread position: | 51-383 |
| Cow position: | chr10:66427485-66427816 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 53-355 |
| Cow position: | chr10:14959621-14959923 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 38, 6 |
| Conread position: | 64-374 |
| Cow position: | chr10:69685833-69685529 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 85-293 |
| Cow position: | chr10:65688646-65688437 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 113-335 |
| Cow position: | chr10:15381439-15381663 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 113-364 |
| Cow position: | chr10:7762153-7761903 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 113-368 |
| Cow position: | chr10:3648723-3648470 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 113-374 |
| Cow position: | chr10:58840540-58840804 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 113-383 |
| Cow position: | chr10:8095056-8095327 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 113-387 |
| Cow position: | chr10:592837-592567 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 113-388 |
| Cow position: | chr10:726495-726770 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 115-372 |
| Cow position: | chr10:54966878-54967115 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 118-373 |
| Cow position: | chr10:19651596-19651343 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 124-372 |
| Cow position: | chr10:32981082-32981321 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 140-374 |
| Cow position: | chr10:38435340-38435567 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 88, 8 |
| Conread position: | 141-372 |
| Cow position: | chr10:52666795-52666574 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 86, 7 |
| Conread position: | 148-372 |
| Cow position: | chr10:21373062-21372845 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 11 |
| Conread position: | 161-366 |
| Cow position: | chr10:34806604-34806405 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 175, 113 |
| Conread position: | 165-383 |
| Cow position: | chr10:52420900-52421118 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 167-374 |
| Cow position: | chr10:42673536-42673323 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 31, 176 |
| Conread position: | 168-372 |
| Cow position: | chr10:55305468-55305665 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 59, 116 |
| Conread position: | 168-372 |
| Cow position: | chr10:63475420-63475225 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 168-373 |
| Cow position: | chr10:5864011-5863801 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 168-373 |
| Cow position: | chr10:64322661-64322875 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 178 |
| Conread position: | 168-373 |
| Cow position: | chr10:68370713-68370921 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 168-374 |
| Cow position: | chr10:63378524-63378315 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 151 |
| Conread position: | 174-285 |
| Cow position: | chr10:36559308-36559201 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 175-371 |
| Cow position: | chr10:46395767-46395577 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 175-372 |
| Cow position: | chr10:13333974-13333780 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 48, 107 |
| Conread position: | 175-372 |
| Cow position: | chr10:55917374-55917560 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 161, 58 |
| Conread position: | 176-372 |
| Cow position: | chr10:63029948-63029748 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 181-387 |
| Cow position: | chr10:16804309-16804100 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 182-328 |
| Cow position: | chr10:64094343-64094194 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 98 |
| Conread position: | 183-373 |
| Cow position: | chr10:10756095-10755899 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 192-387 |
| Cow position: | chr10:1862066-1861869 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 206-404 |
| Cow position: | chr10:14423317-14423117 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 239-387 |
| Cow position: | chr10:4664161-4664011 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 99 |
| Conread position: | 241-366 |
| Cow position: | chr10:4601696-4601572 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 254-374 |
| Cow position: | chr10:46080564-46080443 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 391-816 |
| Cow position: | chr10:46294317-46293910 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 413-692 |
| Cow position: | chr10:39150445-39150159 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 123, 53 |
| Conread position: | 415-835 |
| Cow position: | chr10:61573127-61572719 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 96, 13 |
| Conread position: | 421-831 |
| Cow position: | chr10:27241857-27241443 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 233 |
| Conread position: | 422-815 |
| Cow position: | chr10:62134604-62134995 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 424-683 |
| Cow position: | chr10:1721708-1721453 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 145, 115 |
| Conread position: | 428-728 |
| Cow position: | chr10:27395373-27395082 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 428-827 |
| Cow position: | chr10:63356864-63357251 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 108, 20 |
| Conread position: | 428-835 |
| Cow position: | chr10:26570754-26570351 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 152, 107 |
| Conread position: | 430-816 |
| Cow position: | chr10:53096412-53096799 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 94 |
| Conread position: | 430-823 |
| Cow position: | chr10:51444336-51444716 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 115, 70 |
| Conread position: | 441-827 |
| Cow position: | chr10:35469370-35469740 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 441-831 |
| Cow position: | chr10:9392117-9391728 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 108 |
| Conread position: | 443-832 |
| Cow position: | chr10:52702987-52703375 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 274 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 139, 61 |
| Conread position: | 447-816 |
| Cow position: | chr10:46021278-46021637 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 192, 98 |
| Conread position: | 447-832 |
| Cow position: | chr10:17372175-17372546 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 161, 98 |
| Conread position: | 468-810 |
| Cow position: | chr10:54409861-54410193 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 61, 109 |
| Conread position: | 471-772 |
| Cow position: | chr10:44112433-44112140 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 100, 27 |
| Conread position: | 503-832 |
| Cow position: | chr10:43254199-43254532 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 42, 145 |
| Conread position: | 538-832 |
| Cow position: | chr10:59355274-59355568 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 547-832 |
| Cow position: | chr10:47411169-47410887 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 138, 24 |
| Conread position: | 550-832 |
| Cow position: | chr10:59253623-59253902 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 5 |
| Conread position: | 565-814 |
| Cow position: | chr10:11095889-11095633 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 580-806 |
| Cow position: | chr10:48738948-48738716 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 163 |
| Conread position: | 585-829 |
| Cow position: | chr10:53853266-53853506 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 133, 15 |
| Conread position: | 585-867 |
| Cow position: | chr10:37187260-37187537 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 102, 44 |
| Conread position: | 591-831 |
| Cow position: | chr10:15423525-15423290 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 150, 53 |
| Conread position: | 592-832 |
| Cow position: | chr10:37779191-37778957 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 86 |
| Conread position: | 594-832 |
| Cow position: | chr10:39125795-39125557 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 60 |
| Conread position: | 616-832 |
| Cow position: | chr10:12858070-12857852 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 690-834 |
| Cow position: | chr10:34757520-34757666 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 723-816 |
| Cow position: | chr10:17121751-17121844 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 723-831 |
| Cow position: | chr10:33874706-33874814 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 26, 21 |
| Conread position: | 723-835 |
| Cow position: | chr10:15411332-15411443 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 20 |
Show alignments to all cow chromosomes.