Cow genome map

Conread name: Ss1.1-Pig4-TMW8039P19.5

Conread position: 3-281
Cow position: chr11:26232783-26232503 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 194
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 89, 61

Conread position: 3-368
Cow position: chr11:30084517-30084159 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 259
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 64

Conread position: 3-387
Cow position: chr11:5292751-5292378 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 29

Conread position: 3-391
Cow position: chr11:64813833-64814221 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 30

Conread position: 3-396
Cow position: chr11:5441374-5440979 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 268
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 23, 31

Conread position: 3-408
Cow position: chr11:37319291-37319696 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 61

Conread position: 4-374
Cow position: chr11:50649423-50649051 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 54

Conread position: 5-400
Cow position: chr11:77161013-77161404 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 54

Conread position: 39-373
Cow position: chr11:76600012-76599676 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 20

Conread position: 51-323
Cow position: chr11:3161068-3160799 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 82, 8

Conread position: 51-401
Cow position: chr11:38679802-38680142 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 13

Conread position: 57-373
Cow position: chr11:14134800-14135120 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 112

Conread position: 80-374
Cow position: chr11:6575250-6575546 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 55

Conread position: 80-374
Cow position: chr11:37334691-37334983 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 11, 21

Conread position: 85-372
Cow position: chr11:7662299-7662585 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 145, 36

Conread position: 91-369
Cow position: chr11:40366504-40366784 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 43, 76

Conread position: 92-255
Cow position: chr11:58537631-58537470 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 75

Conread position: 113-334
Cow position: chr11:70142806-70142579 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 54

Conread position: 113-337
Cow position: chr11:63275878-63275649 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 26

Conread position: 113-367
Cow position: chr11:49604107-49603860 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 38

Conread position: 113-368
Cow position: chr11:79726611-79726873 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 55

Conread position: 113-372
Cow position: chr11:30766929-30766670 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 6, 55

Conread position: 113-373
Cow position: chr11:70888334-70888069 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 205
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 20, 38

Conread position: 113-374
Cow position: chr11:12167652-12167389 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 38, 54

Conread position: 113-374
Cow position: chr11:30216372-30216123 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 37, 0

Conread position: 113-374
Cow position: chr11:39276985-39276725 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 24

Conread position: 114-337
Cow position: chr11:11684851-11685067 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 54

Conread position: 114-370
Cow position: chr11:76870586-76870825 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 23

Conread position: 114-372
Cow position: chr11:14353454-14353199 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 32

Conread position: 114-373
Cow position: chr11:77178313-77178573 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 53

Conread position: 119-368
Cow position: chr11:62409362-62409127 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 47

Conread position: 122-372
Cow position: chr11:7050917-7051159 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 79, 13

Conread position: 124-372
Cow position: chr11:66889686-66889923 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 170
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 10, 27

Conread position: 124-387
Cow position: chr11:106221-106486 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 201
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 103, 24

Conread position: 141-367
Cow position: chr11:39997428-39997213 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 141-370
Cow position: chr11:32389656-32389880 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 88, 8

Conread position: 141-372
Cow position: chr11:80192540-80192761 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 86, 7

Conread position: 141-372
Cow position: chr11:80343827-80343605 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 86, 7

Conread position: 148-372
Cow position: chr11:4678061-4678281 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 81, 16

Conread position: 167-383
Cow position: chr11:7044672-7044888 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 33, 170

Conread position: 168-320
Cow position: chr11:66033848-66034003 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 63, 136

Conread position: 168-391
Cow position: chr11:26305348-26305126 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 28, 121

Conread position: 175-326
Cow position: chr11:35453471-35453627 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 177-412
Cow position: chr11:14673929-14673699 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 74, 0

Conread position: 178-335
Cow position: chr11:81347822-81347980 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 129
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 18, 0

Conread position: 181-374
Cow position: chr11:76871392-76871194 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 160
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 70, 0

Conread position: 182-365
Cow position: chr11:79807699-79807888 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 16, 0

Conread position: 182-401
Cow position: chr11:35577111-35577340 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 48, 217

Conread position: 184-374
Cow position: chr11:42119452-42119263 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 12, 116

Conread position: 184-387
Cow position: chr11:2546077-2546285 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 164
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 47, 0

Conread position: 186-383
Cow position: chr11:20991093-20990893 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 162
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 38, 181

Conread position: 189-401
Cow position: chr11:10007543-10007340 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 116, 25

Conread position: 375-812
Cow position: chr11:10626157-10626582 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 19

Conread position: 380-809
Cow position: chr11:42333782-42334222 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 48

Conread position: 391-705
Cow position: chr11:484554-484862 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 212
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 132, 22

Conread position: 394-826
Cow position: chr11:65645834-65645419 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 289
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 38, 75

Conread position: 414-799
Cow position: chr11:40752119-40752496 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 249
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 87, 15

Conread position: 414-835
Cow position: chr11:47620219-47619798 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 6

Conread position: 415-596
Cow position: chr11:78319699-78319882 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 121, 0

Conread position: 415-617
Cow position: chr11:24107657-24107456 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 139
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 13, 87

Conread position: 416-831
Cow position: chr11:50777323-50777730 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 273
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 85, 13

Conread position: 417-832
Cow position: chr11:61915614-61916030 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 281
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 112, 174

Conread position: 424-716
Cow position: chr11:22098890-22099186 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 196
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 82, 26

Conread position: 427-828
Cow position: chr11:30107056-30107450 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 268
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 74, 90

Conread position: 428-816
Cow position: chr11:65767563-65767943 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 261
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 218, 31

Conread position: 428-831
Cow position: chr11:57059365-57058975 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 258
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 139, 72

Conread position: 428-832
Cow position: chr11:63209002-63209395 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 21

Conread position: 430-832
Cow position: chr11:56688670-56688275 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 258
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 103, 51

Conread position: 430-837
Cow position: chr11:46745471-46745085 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 265
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 78, 9

Conread position: 444-831
Cow position: chr11:55035845-55036229 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 267
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 79, 66

Conread position: 447-832
Cow position: chr11:56923965-56923587 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 258
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 54, 19

Conread position: 447-833
Cow position: chr11:24176240-24175869 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 263
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 73, 101

Conread position: 458-728
Cow position: chr11:68644761-68644488 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 185
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 65, 188

Conread position: 458-835
Cow position: chr11:14678897-14678522 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 253
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 109, 86

Conread position: 469-686
Cow position: chr11:59982677-59982892 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 103, 73

Conread position: 469-832
Cow position: chr11:61860198-61859828 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 264
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 126

Conread position: 484-814
Cow position: chr11:72634688-72634357 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 228
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 21, 50

Conread position: 506-805
Cow position: chr11:19578428-19578126 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 205
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 63, 27

Conread position: 506-832
Cow position: chr11:81921951-81922275 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 227
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 60, 40

Conread position: 507-832
Cow position: chr11:51108426-51108101 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 212
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 73, 172

Conread position: 526-841
Cow position: chr11:35489307-35489622 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 201
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 163, 105

Conread position: 547-778
Cow position: chr11:45499539-45499299 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 18, 43

Conread position: 563-823
Cow position: chr11:76885704-76885949 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 186, 27

Conread position: 580-835
Cow position: chr11:52292151-52292404 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 107, 35

Conread position: 583-829
Cow position: chr11:81161359-81161603 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 27, 84

Conread position: 585-832
Cow position: chr11:56542523-56542275 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 100, 164

Conread position: 589-832
Cow position: chr11:75992793-75993028 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 93, 107

Conread position: 613-816
Cow position: chr11:66665282-66665491 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 74, 134

Conread position: 615-835
Cow position: chr11:48011143-48010928 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 72, 97

Conread position: 651-816
Cow position: chr11:72424668-72424833 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 27

Conread position: 690-831
Cow position: chr11:71943443-71943586 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 700-832
Cow position: chr11:30113906-30114039 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 18, 41

Show alignments to all cow chromosomes.