Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-216 |
| Cow position: | chr12:32865608-32865817 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 3-368 |
| Cow position: | chr12:36069444-36069078 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 3-372 |
| Cow position: | chr12:5982523-5982144 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 3-373 |
| Cow position: | chr12:16081996-16081624 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 3-383 |
| Cow position: | chr12:2004984-2005353 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 89, 22 |
| Conread position: | 3-396 |
| Cow position: | chr12:16908941-16908554 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 3-401 |
| Cow position: | chr12:15131593-15131990 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 55 |
| Conread position: | 22-404 |
| Cow position: | chr12:21268355-21268718 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 51-383 |
| Cow position: | chr12:45704073-45703744 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 57-374 |
| Cow position: | chr12:31871182-31870860 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 113 |
| Conread position: | 64-370 |
| Cow position: | chr12:13634608-13634907 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 27, 84 |
| Conread position: | 85-387 |
| Cow position: | chr12:42786308-42786017 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 166, 19 |
| Conread position: | 86-274 |
| Cow position: | chr12:9276858-9277048 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 113-364 |
| Cow position: | chr12:26214044-26213789 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 113-364 |
| Cow position: | chr12:39937297-39937549 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 113-374 |
| Cow position: | chr12:16352529-16352267 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 113-374 |
| Cow position: | chr12:26292740-26292478 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 113-374 |
| Cow position: | chr12:31608858-31608599 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 118-381 |
| Cow position: | chr12:11213093-11213356 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 124-368 |
| Cow position: | chr12:35638710-35638944 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 124-372 |
| Cow position: | chr12:8963566-8963803 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 126-383 |
| Cow position: | chr12:39551759-39552014 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 128-373 |
| Cow position: | chr12:26174362-26174605 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 140-373 |
| Cow position: | chr12:34597925-34597700 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 8 |
| Conread position: | 141-363 |
| Cow position: | chr12:30531740-30531958 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 114, 7 |
| Conread position: | 141-372 |
| Cow position: | chr12:36251486-36251703 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 141-387 |
| Cow position: | chr12:41777828-41778068 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 92, 7 |
| Conread position: | 141-394 |
| Cow position: | chr12:4146293-4146045 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 148-383 |
| Cow position: | chr12:42941072-42940834 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 149-368 |
| Cow position: | chr12:15072909-15072699 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 80, 16 |
| Conread position: | 168-373 |
| Cow position: | chr12:39115161-39114965 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 87, 74 |
| Conread position: | 168-391 |
| Cow position: | chr12:20225542-20225760 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 81, 45 |
| Conread position: | 181-374 |
| Cow position: | chr12:40549005-40549205 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 165 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 17, 162 |
| Conread position: | 182-373 |
| Cow position: | chr12:34395520-34395712 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 203-370 |
| Cow position: | chr12:39177646-39177476 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 30, 126 |
| Conread position: | 395-837 |
| Cow position: | chr12:43139470-43139900 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 142, 30 |
| Conread position: | 412-652 |
| Cow position: | chr12:14290576-14290331 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 96, 8 |
| Conread position: | 415-830 |
| Cow position: | chr12:43421596-43421198 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 129, 5 |
| Conread position: | 416-835 |
| Cow position: | chr12:34405909-34406315 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 182 |
| Conread position: | 421-832 |
| Cow position: | chr12:38098155-38097753 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 281 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 28, 231 |
| Conread position: | 422-861 |
| Cow position: | chr12:15847012-15846573 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 102, 51 |
| Conread position: | 423-835 |
| Cow position: | chr12:13162733-13162312 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 32, 272 |
| Conread position: | 424-834 |
| Cow position: | chr12:37007708-37008105 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 96 |
| Conread position: | 428-796 |
| Cow position: | chr12:7470843-7471209 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 111, 57 |
| Conread position: | 428-832 |
| Cow position: | chr12:17319514-17319109 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 278 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 73, 97 |
| Conread position: | 443-745 |
| Cow position: | chr12:39106704-39106994 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 28, 79 |
| Conread position: | 447-803 |
| Cow position: | chr12:25245765-25245414 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 82, 118 |
| Conread position: | 447-831 |
| Cow position: | chr12:9460531-9460170 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 460-813 |
| Cow position: | chr12:10691372-10691004 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 107, 87 |
| Conread position: | 538-831 |
| Cow position: | chr12:13872626-13872331 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 58, 274 |
| Conread position: | 559-831 |
| Cow position: | chr12:10510407-10510143 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 560-835 |
| Cow position: | chr12:17751800-17751533 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 14, 152 |
| Conread position: | 562-832 |
| Cow position: | chr12:33895256-33895526 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 570-835 |
| Cow position: | chr12:13993471-13993735 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 591-816 |
| Cow position: | chr12:34804566-34804791 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 131, 89 |
| Conread position: | 609-832 |
| Cow position: | chr12:38892314-38892092 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 56 |
| Conread position: | 611-837 |
| Cow position: | chr12:6870526-6870753 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 32 |
| Conread position: | 670-833 |
| Cow position: | chr12:4759751-4759915 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 687-832 |
| Cow position: | chr12:10252751-10252608 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 57 |
| Conread position: | 690-832 |
| Cow position: | chr12:38307317-38307459 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 131 |
Show alignments to all cow chromosomes.