Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-251 |
| Cow position: | chr13:20460555-20460802 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 3-308 |
| Cow position: | chr13:17129928-17129616 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 3-362 |
| Cow position: | chr13:25792426-25792061 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 121 |
| Conread position: | 3-374 |
| Cow position: | chr13:8643697-8644071 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 3-374 |
| Cow position: | chr13:41201356-41201725 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 23 |
| Conread position: | 3-391 |
| Cow position: | chr13:26366910-26367300 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 32, 63 |
| Conread position: | 3-393 |
| Cow position: | chr13:44433639-44434027 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 52 |
| Conread position: | 3-405 |
| Cow position: | chr13:48204122-48203733 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 4-298 |
| Cow position: | chr13:51091396-51091094 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 88, 61 |
| Conread position: | 5-368 |
| Cow position: | chr13:56232058-56231695 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 112 |
| Conread position: | 32-391 |
| Cow position: | chr13:56227685-56227330 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 39-368 |
| Cow position: | chr13:55382974-55383312 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 51-404 |
| Cow position: | chr13:51135807-51135446 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 85-374 |
| Cow position: | chr13:6350088-6349801 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 112-355 |
| Cow position: | chr13:19327906-19328151 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 113-368 |
| Cow position: | chr13:12986235-12985979 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 113-372 |
| Cow position: | chr13:25343204-25342945 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 113-374 |
| Cow position: | chr13:6333889-6333636 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 113-374 |
| Cow position: | chr13:14610714-14610969 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 113-374 |
| Cow position: | chr13:55952731-55952992 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 113-382 |
| Cow position: | chr13:17935715-17935442 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 113-383 |
| Cow position: | chr13:20630720-20630452 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 113-387 |
| Cow position: | chr13:31437531-31437256 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 114-303 |
| Cow position: | chr13:27228218-27228029 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 141-367 |
| Cow position: | chr13:53826851-53826627 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 87, 7 |
| Conread position: | 161-321 |
| Cow position: | chr13:43712480-43712313 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 167-373 |
| Cow position: | chr13:2772510-2772297 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 31, 176 |
| Conread position: | 168-367 |
| Cow position: | chr13:15853490-15853687 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 113 |
| Conread position: | 182-402 |
| Cow position: | chr13:36322888-36323117 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 15, 100 |
| Conread position: | 226-372 |
| Cow position: | chr13:22944929-22945082 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 259-372 |
| Cow position: | chr13:20460838-20460951 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-616 |
| Cow position: | chr13:22573272-22573041 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 6, 27 |
| Conread position: | 408-697 |
| Cow position: | chr13:43664463-43664754 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 137, 17 |
| Conread position: | 412-661 |
| Cow position: | chr13:32997847-32998099 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 124, 15 |
| Conread position: | 416-808 |
| Cow position: | chr13:12626177-12626567 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 105 |
| Conread position: | 416-835 |
| Cow position: | chr13:49529689-49530106 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 268 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 422-666 |
| Cow position: | chr13:49266855-49266611 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 117, 146 |
| Conread position: | 423-827 |
| Cow position: | chr13:25918095-25917690 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 210 |
| Conread position: | 428-810 |
| Cow position: | chr13:1071225-1071607 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 97 |
| Conread position: | 434-832 |
| Cow position: | chr13:41705766-41705381 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 277 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 76, 28 |
| Conread position: | 440-618 |
| Cow position: | chr13:39663392-39663209 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 153 |
| Conread position: | 444-829 |
| Cow position: | chr13:6555660-6555273 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 66, 31 |
| Conread position: | 447-832 |
| Cow position: | chr13:6086347-6085969 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 89, 19 |
| Conread position: | 453-801 |
| Cow position: | chr13:41712119-41711771 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 48, 94 |
| Conread position: | 453-812 |
| Cow position: | chr13:52554056-52554419 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 24, 136 |
| Conread position: | 504-835 |
| Cow position: | chr13:32720575-32720256 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 181, 29 |
| Conread position: | 533-835 |
| Cow position: | chr13:648693-648997 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 96 |
| Conread position: | 542-808 |
| Cow position: | chr13:52955996-52955725 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 27, 106 |
| Conread position: | 548-832 |
| Cow position: | chr13:40125085-40125373 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 97 |
| Conread position: | 576-801 |
| Cow position: | chr13:4191907-4191683 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 111, 33 |
| Conread position: | 609-837 |
| Cow position: | chr13:53103505-53103734 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 33, 95 |
| Conread position: | 716-835 |
| Cow position: | chr13:54769940-54770060 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.