Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-231 |
| Cow position: | chr14:42409328-42409558 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 34, 67 |
| Conread position: | 3-368 |
| Cow position: | chr14:12299474-12299841 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 3-368 |
| Cow position: | chr14:48105167-48104808 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 93, 23 |
| Conread position: | 3-371 |
| Cow position: | chr14:25988451-25988819 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 29 |
| Conread position: | 3-372 |
| Cow position: | chr14:14779176-14778804 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 3-374 |
| Cow position: | chr14:32797617-32797973 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 56 |
| Conread position: | 3-374 |
| Cow position: | chr14:46564583-46564954 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 17 |
| Conread position: | 3-375 |
| Cow position: | chr14:46582879-46582502 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 3-382 |
| Cow position: | chr14:29712617-29712242 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 3-387 |
| Cow position: | chr14:3168248-3168617 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 4-371 |
| Cow position: | chr14:25151183-25151561 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 5-374 |
| Cow position: | chr14:45572248-45572630 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 59 |
| Conread position: | 15-407 |
| Cow position: | chr14:46046412-46046019 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 21-374 |
| Cow position: | chr14:44481438-44481098 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 32-383 |
| Cow position: | chr14:31380824-31380470 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 77 |
| Conread position: | 39-368 |
| Cow position: | chr14:35049264-35049591 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 76-263 |
| Cow position: | chr14:46952777-46952961 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 75, 46 |
| Conread position: | 113-373 |
| Cow position: | chr14:25170679-25170417 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 113-374 |
| Cow position: | chr14:33595199-33595455 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 113-382 |
| Cow position: | chr14:32723812-32724083 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 114-278 |
| Cow position: | chr14:21998500-21998661 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 114-370 |
| Cow position: | chr14:35172786-35172534 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 136-372 |
| Cow position: | chr14:46398262-46398504 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 141-337 |
| Cow position: | chr14:24385751-24385936 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 7 |
| Conread position: | 141-372 |
| Cow position: | chr14:3332695-3332471 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 86, 7 |
| Conread position: | 144-374 |
| Cow position: | chr14:3925920-3925681 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 149-368 |
| Cow position: | chr14:45763857-45763641 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 81, 16 |
| Conread position: | 154-382 |
| Cow position: | chr14:1479895-1480124 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 167-373 |
| Cow position: | chr14:46556377-46556175 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 167-374 |
| Cow position: | chr14:14643336-14643122 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 168-372 |
| Cow position: | chr14:12369405-12369611 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 64 |
| Conread position: | 168-372 |
| Cow position: | chr14:43680144-43680335 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 168-396 |
| Cow position: | chr14:2326618-2326841 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 189, 70 |
| Conread position: | 180-388 |
| Cow position: | chr14:9768831-9769034 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 186-335 |
| Cow position: | chr14:39644168-39644315 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 7 |
| Conread position: | 230-390 |
| Cow position: | chr14:37921914-37921760 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 380-840 |
| Cow position: | chr14:46883142-46882686 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 153 |
| Conread position: | 414-620 |
| Cow position: | chr14:33340071-33340278 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 125, 11 |
| Conread position: | 414-805 |
| Cow position: | chr14:37331160-37330778 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 113, 75 |
| Conread position: | 414-832 |
| Cow position: | chr14:36778432-36778844 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 6 |
| Conread position: | 416-806 |
| Cow position: | chr14:24144448-24144838 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 39, 183 |
| Conread position: | 420-832 |
| Cow position: | chr14:13605821-13605426 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 159, 38 |
| Conread position: | 421-835 |
| Cow position: | chr14:34839132-34838721 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 80, 109 |
| Conread position: | 422-832 |
| Cow position: | chr14:6402590-6403013 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 283 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 75, 306 |
| Conread position: | 428-830 |
| Cow position: | chr14:43284065-43284460 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 73, 49 |
| Conread position: | 439-811 |
| Cow position: | chr14:38298684-38299065 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 9, 226 |
| Conread position: | 447-832 |
| Cow position: | chr14:32541915-32542291 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 450-835 |
| Cow position: | chr14:42995314-42995701 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 129, 48 |
| Conread position: | 474-801 |
| Cow position: | chr14:46494408-46494731 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 65, 139 |
| Conread position: | 502-832 |
| Cow position: | chr14:3754236-3754566 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 543-802 |
| Cow position: | chr14:21233830-21233561 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 546-800 |
| Cow position: | chr14:16818187-16818429 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 548-832 |
| Cow position: | chr14:21943857-21943578 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 564-827 |
| Cow position: | chr14:8099109-8099365 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 82, 76 |
| Conread position: | 566-831 |
| Cow position: | chr14:36597072-36597337 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 77 |
| Conread position: | 579-804 |
| Cow position: | chr14:7570258-7570036 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 170, 121 |
| Conread position: | 580-816 |
| Cow position: | chr14:27993387-27993625 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 108, 55 |
| Conread position: | 624-832 |
| Cow position: | chr14:42241256-42241047 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 54 |
| Conread position: | 653-835 |
| Cow position: | chr14:16944092-16944275 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 661-830 |
| Cow position: | chr14:24171358-24171186 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 690-832 |
| Cow position: | chr14:4572754-4572611 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 25, 55 |
| Conread position: | 690-832 |
| Cow position: | chr14:36334425-36334567 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 36 |
Show alignments to all cow chromosomes.