Cow genome map

Conread name: Ss1.1-Pig4-TMW8039P19.5

Conread position: 3-250
Cow position: chr15:11759672-11759915 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 90, 29

Conread position: 3-368
Cow position: chr15:44997710-44998078 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 30

Conread position: 3-369
Cow position: chr15:34170694-34170350 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 239
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 302, 55

Conread position: 3-372
Cow position: chr15:32659836-32660203 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 260
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 64, 125

Conread position: 3-373
Cow position: chr15:6447096-6447472 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 63

Conread position: 3-374
Cow position: chr15:15632521-15632885 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 30

Conread position: 3-374
Cow position: chr15:19728650-19729017 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 56

Conread position: 3-374
Cow position: chr15:51241024-51241397 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 30

Conread position: 3-401
Cow position: chr15:25466452-25466061 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 269
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 88, 61

Conread position: 4-374
Cow position: chr15:33611551-33611929 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 32

Conread position: 32-383
Cow position: chr15:45696260-45696614 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 247
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 60, 32

Conread position: 50-335
Cow position: chr15:14418393-14418111 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 31, 5

Conread position: 51-335
Cow position: chr15:49130108-49130383 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 13

Conread position: 51-367
Cow position: chr15:1304610-1304295 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 14

Conread position: 51-370
Cow position: chr15:8439433-8439753 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 14

Conread position: 51-373
Cow position: chr15:18675539-18675859 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 41, 8

Conread position: 51-393
Cow position: chr15:50442268-50441924 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 247
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 39, 27

Conread position: 96-374
Cow position: chr15:17189714-17189993 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 72

Conread position: 110-372
Cow position: chr15:42551672-42551412 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 120, 6

Conread position: 113-372
Cow position: chr15:24399800-24399545 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 38

Conread position: 113-372
Cow position: chr15:45509574-45509834 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 36, 53

Conread position: 113-374
Cow position: chr15:16431993-16431731 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 49

Conread position: 113-374
Cow position: chr15:42660008-42659744 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 54

Conread position: 114-330
Cow position: chr15:8438995-8439208 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 38

Conread position: 114-330
Cow position: chr15:35449473-35449692 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 27, 38

Conread position: 117-374
Cow position: chr15:22548315-22548063 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 24, 50

Conread position: 118-383
Cow position: chr15:18212822-18213091 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 192
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 33, 150

Conread position: 122-383
Cow position: chr15:20128644-20128903 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 79, 13

Conread position: 144-373
Cow position: chr15:8949003-8949230 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 53, 21

Conread position: 146-368
Cow position: chr15:26171090-26170867 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 19

Conread position: 167-374
Cow position: chr15:6309482-6309268 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 31, 176

Conread position: 168-356
Cow position: chr15:14470821-14471013 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 168-363
Cow position: chr15:50547799-50547597 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 29, 186

Conread position: 168-368
Cow position: chr15:17005425-17005224 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 28, 106

Conread position: 168-371
Cow position: chr15:12799384-12799581 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 171, 109

Conread position: 168-383
Cow position: chr15:19934802-19934592 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 59, 112

Conread position: 169-371
Cow position: chr15:1216388-1216196 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 7, 62

Conread position: 175-372
Cow position: chr15:33464635-33464838 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 55, 0

Conread position: 181-373
Cow position: chr15:37755759-37755554 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 168

Conread position: 181-374
Cow position: chr15:32432411-32432607 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 156
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 18, 63

Conread position: 213-377
Cow position: chr15:3054381-3054217 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 34

Conread position: 386-832
Cow position: chr15:22615226-22614786 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 293
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 118, 20

Conread position: 393-729
Cow position: chr15:41001403-41001075 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 215
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 20

Conread position: 395-805
Cow position: chr15:41474501-41474108 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 263
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 143, 15

Conread position: 414-733
Cow position: chr15:2417986-2417664 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 82, 7

Conread position: 415-775
Cow position: chr15:10559971-10560335 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 237
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 90, 13

Conread position: 415-835
Cow position: chr15:9506969-9507380 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 69

Conread position: 423-835
Cow position: chr15:46305082-46305496 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 283

Conread position: 426-835
Cow position: chr15:26219480-26219055 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 287
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 75, 95

Conread position: 428-835
Cow position: chr15:26435855-26435447 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 274
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 37, 22

Conread position: 430-808
Cow position: chr15:28555583-28555946 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 250
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 71, 161

Conread position: 430-835
Cow position: chr15:41920281-41920711 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 285
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 73, 111

Conread position: 432-832
Cow position: chr15:5901119-5901522 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 268
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 22, 95

Conread position: 438-836
Cow position: chr15:1810467-1810073 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 60

Conread position: 446-818
Cow position: chr15:38123598-38123234 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 261
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 121, 13

Conread position: 448-832
Cow position: chr15:26944599-26944978 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 259
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 53, 77

Conread position: 451-676
Cow position: chr15:6376611-6376830 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 116, 31

Conread position: 453-832
Cow position: chr15:23551630-23551999 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 262
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 48, 69

Conread position: 457-832
Cow position: chr15:16510950-16511314 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 249
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 43, 108

Conread position: 459-828
Cow position: chr15:37854787-37854430 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 261
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 108, 68

Conread position: 532-832
Cow position: chr15:6858143-6857837 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 207
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 116

Conread position: 547-832
Cow position: chr15:35507133-35507418 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 38, 25

Conread position: 547-836
Cow position: chr15:30457819-30458096 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 22, 76

Conread position: 594-812
Cow position: chr15:24490675-24490456 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 66, 21

Conread position: 609-835
Cow position: chr15:2057428-2057208 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 76, 80

Conread position: 690-835
Cow position: chr15:44508898-44508754 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 130, 0

Show alignments to all cow chromosomes.