Cow genome map

Conread name: Ss1.1-Pig4-TMW8039P19.5

Conread position: 1-374
Cow position: chr16:33435506-33435871 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 57

Conread position: 3-367
Cow position: chr16:33377608-33377254 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 262
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 86, 61

Conread position: 3-368
Cow position: chr16:10669623-10669258 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 51

Conread position: 3-372
Cow position: chr16:571574-571213 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 266
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 80, 61

Conread position: 3-382
Cow position: chr16:48895644-48896018 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 62

Conread position: 3-383
Cow position: chr16:44460292-44460673 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 61

Conread position: 3-387
Cow position: chr16:412053-412427 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 62

Conread position: 3-387
Cow position: chr16:13513211-13513599 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 61

Conread position: 3-401
Cow position: chr16:40521858-40522253 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 61

Conread position: 3-405
Cow position: chr16:37100601-37100992 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 61

Conread position: 4-374
Cow position: chr16:15258023-15258394 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 221
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 82, 55

Conread position: 9-364
Cow position: chr16:12093137-12092797 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 248
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 82, 7

Conread position: 20-374
Cow position: chr16:17162981-17162627 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 13

Conread position: 92-362
Cow position: chr16:203405-203138 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 186
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 36

Conread position: 106-407
Cow position: chr16:49910805-49911107 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 46, 61

Conread position: 113-335
Cow position: chr16:14182776-14182559 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 20, 24

Conread position: 113-369
Cow position: chr16:33531456-33531208 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 54

Conread position: 113-373
Cow position: chr16:10179030-10178770 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 37, 9

Conread position: 113-374
Cow position: chr16:43861045-43861309 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 37

Conread position: 113-383
Cow position: chr16:21725787-21726047 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 193
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 29, 40

Conread position: 113-389
Cow position: chr16:3160003-3160275 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 192
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 20, 77

Conread position: 113-399
Cow position: chr16:11484603-11484884 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 37, 54

Conread position: 113-401
Cow position: chr16:33439358-33439660 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 37, 54

Conread position: 114-372
Cow position: chr16:4141494-4141224 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 37

Conread position: 114-372
Cow position: chr16:55127170-55126916 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 39

Conread position: 138-373
Cow position: chr16:40501800-40501566 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 29

Conread position: 141-374
Cow position: chr16:35447276-35447500 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 89, 7

Conread position: 150-373
Cow position: chr16:56209796-56209572 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 174
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 79, 15

Conread position: 151-401
Cow position: chr16:47366378-47366615 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 73, 14

Conread position: 167-280
Cow position: chr16:19262989-19263104 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 99
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 167-373
Cow position: chr16:1631895-1631690 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 162
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 34, 52

Conread position: 167-374
Cow position: chr16:52619327-52619540 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 35, 175

Conread position: 167-383
Cow position: chr16:35415448-35415668 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 36, 143

Conread position: 168-368
Cow position: chr16:16076334-16076530 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 29, 70

Conread position: 168-368
Cow position: chr16:16087970-16088166 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 70

Conread position: 168-368
Cow position: chr16:35291231-35291432 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 28, 0

Conread position: 168-372
Cow position: chr16:7433560-7433758 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 171, 108

Conread position: 168-373
Cow position: chr16:10933405-10933192 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 30, 0

Conread position: 168-374
Cow position: chr16:22243793-22243581 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 31, 174

Conread position: 168-383
Cow position: chr16:24586805-24587021 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 31, 142

Conread position: 175-281
Cow position: chr16:28068201-28068309 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 175-335
Cow position: chr16:3139827-3139991 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 21, 98

Conread position: 182-364
Cow position: chr16:12004639-12004456 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 182-368
Cow position: chr16:13877816-13878012 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 19, 164

Conread position: 182-370
Cow position: chr16:33874791-33874984 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 14, 180

Conread position: 190-373
Cow position: chr16:50508069-50508253 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 34, 0

Conread position: 223-391
Cow position: chr16:35445910-35446079 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 32, 160

Conread position: 230-369
Cow position: chr16:16724781-16724921 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 415-837
Cow position: chr16:23361588-23361169 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 270
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 86, 12

Conread position: 416-641
Cow position: chr16:35446314-35446086 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 82, 104

Conread position: 418-812
Cow position: chr16:33288751-33289139 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 49

Conread position: 420-817
Cow position: chr16:7909056-7909445 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 84

Conread position: 422-817
Cow position: chr16:55431154-55431538 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 79, 100

Conread position: 422-835
Cow position: chr16:14412626-14413034 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 74

Conread position: 424-835
Cow position: chr16:51498398-51498798 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 284
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 144, 69

Conread position: 428-656
Cow position: chr16:7707801-7708037 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 158
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 430-816
Cow position: chr16:1980915-1980544 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 268
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 16, 53

Conread position: 430-830
Cow position: chr16:13539905-13540308 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 161

Conread position: 430-835
Cow position: chr16:42964301-42963897 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 270
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 137, 20

Conread position: 450-678
Cow position: chr16:39244102-39243884 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 115, 70

Conread position: 450-742
Cow position: chr16:50594330-50594044 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 267, 70

Conread position: 456-835
Cow position: chr16:53686430-53686058 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 261
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 45, 142

Conread position: 460-835
Cow position: chr16:28271035-28270669 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 253
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 69, 87

Conread position: 469-765
Cow position: chr16:24781069-24780765 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 96, 62

Conread position: 470-829
Cow position: chr16:3973145-3972798 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 237
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 247, 77

Conread position: 516-831
Cow position: chr16:11434052-11434366 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 214
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 31

Conread position: 538-811
Cow position: chr16:39241227-39240954 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 182
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 108, 42

Conread position: 538-835
Cow position: chr16:47553441-47553730 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 27, 43

Conread position: 546-805
Cow position: chr16:53768861-53768609 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 42

Conread position: 549-847
Cow position: chr16:13744944-13745236 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 201
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 98

Conread position: 560-812
Cow position: chr16:32505850-32506089 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 127, 28

Conread position: 564-797
Cow position: chr16:39466323-39466085 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 43, 82

Conread position: 565-832
Cow position: chr16:5475094-5475359 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 35, 136

Conread position: 566-835
Cow position: chr16:31212208-31211947 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 187
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 17

Conread position: 570-832
Cow position: chr16:36975380-36975639 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 76, 29

Conread position: 583-830
Cow position: chr16:56178550-56178796 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 167
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 160, 114

Conread position: 585-832
Cow position: chr16:21783609-21783859 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 62

Conread position: 591-835
Cow position: chr16:35051926-35052162 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 50

Conread position: 611-832
Cow position: chr16:34019957-34019738 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 77, 48

Conread position: 612-813
Cow position: chr16:33658256-33658054 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 137
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 135

Conread position: 620-831
Cow position: chr16:15948171-15948379 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 68, 74

Conread position: 627-811
Cow position: chr16:33901751-33901557 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 59, 126

Conread position: 648-808
Cow position: chr16:56093034-56092872 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 39, 98

Conread position: 685-832
Cow position: chr16:39243256-39243107 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 60

Conread position: 685-835
Cow position: chr16:28002750-28002599 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 710-832
Cow position: chr16:50807313-50807190 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 37, 0

Show alignments to all cow chromosomes.