Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-269 |
| Cow position: | chr17:23468066-23468333 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 89, 30 |
| Conread position: | 3-370 |
| Cow position: | chr17:10548973-10549321 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 3-382 |
| Cow position: | chr17:34040741-34041111 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 61 |
| Conread position: | 3-387 |
| Cow position: | chr17:5820935-5821325 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 3-387 |
| Cow position: | chr17:22460816-22460430 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 15-362 |
| Cow position: | chr17:36204836-36205165 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 77, 49 |
| Conread position: | 22-374 |
| Cow position: | chr17:21342933-21342585 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 43 |
| Conread position: | 34-406 |
| Cow position: | chr17:23463521-23463898 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 31 |
| Conread position: | 51-388 |
| Cow position: | chr17:24566516-24566184 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 57-373 |
| Cow position: | chr17:42793817-42794129 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 111 |
| Conread position: | 110-355 |
| Cow position: | chr17:4735988-4736229 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 37, 6 |
| Conread position: | 112-401 |
| Cow position: | chr17:35129721-35130002 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 113-301 |
| Cow position: | chr17:38043657-38043848 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 113-323 |
| Cow position: | chr17:10851593-10851380 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 113-329 |
| Cow position: | chr17:25650632-25650849 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 113-335 |
| Cow position: | chr17:5719121-5719343 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 113-358 |
| Cow position: | chr17:16354883-16354647 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 113-387 |
| Cow position: | chr17:6003003-6003280 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 114-394 |
| Cow position: | chr17:34377726-34377444 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 115-357 |
| Cow position: | chr17:18596994-18597234 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 125-368 |
| Cow position: | chr17:17938879-17938636 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 8, 42 |
| Conread position: | 150-373 |
| Cow position: | chr17:15919538-15919322 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 150-373 |
| Cow position: | chr17:24862459-24862234 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 161-321 |
| Cow position: | chr17:24860657-24860492 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 167-374 |
| Cow position: | chr17:25103710-25103501 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 167-383 |
| Cow position: | chr17:44230883-44230663 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 31, 100 |
| Conread position: | 168-364 |
| Cow position: | chr17:23907121-23907318 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 170-344 |
| Cow position: | chr17:21920854-21921032 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 182-364 |
| Cow position: | chr17:27918902-27919081 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 185-390 |
| Cow position: | chr17:41336850-41337050 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 191-355 |
| Cow position: | chr17:6992784-6992949 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 211-355 |
| Cow position: | chr17:35449108-35449252 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 250-383 |
| Cow position: | chr17:36038215-36038348 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 394-818 |
| Cow position: | chr17:37487224-37487640 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 290 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 23, 208 |
| Conread position: | 398-711 |
| Cow position: | chr17:32920520-32920210 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 160, 21 |
| Conread position: | 415-738 |
| Cow position: | chr17:39854403-39854087 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 272, 5 |
| Conread position: | 417-835 |
| Cow position: | chr17:4325190-4324778 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 84, 102 |
| Conread position: | 421-806 |
| Cow position: | chr17:44061362-44061747 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 118, 136 |
| Conread position: | 428-801 |
| Cow position: | chr17:1098966-1098610 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 428-828 |
| Cow position: | chr17:3568089-3567700 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 73, 36 |
| Conread position: | 438-815 |
| Cow position: | chr17:26854340-26853969 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 439-811 |
| Cow position: | chr17:26499121-26499492 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 14 |
| Conread position: | 440-816 |
| Cow position: | chr17:34195853-34196221 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 118 |
| Conread position: | 440-828 |
| Cow position: | chr17:23556893-23556523 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 76, 81 |
| Conread position: | 447-657 |
| Cow position: | chr17:37494024-37493818 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 155, 77 |
| Conread position: | 447-835 |
| Cow position: | chr17:30774370-30773988 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 112 |
| Conread position: | 462-832 |
| Cow position: | chr17:37527005-37527385 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 39, 59 |
| Conread position: | 467-703 |
| Cow position: | chr17:27513930-27513690 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 477-791 |
| Cow position: | chr17:42707784-42708116 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 479-832 |
| Cow position: | chr17:26414609-26414944 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 518-886 |
| Cow position: | chr17:4800258-4800632 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 104 |
| Conread position: | 538-829 |
| Cow position: | chr17:1222315-1222020 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 190 |
| Conread position: | 538-832 |
| Cow position: | chr17:14604228-14603937 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 547-832 |
| Cow position: | chr17:27143797-27144078 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 20, 120 |
| Conread position: | 612-835 |
| Cow position: | chr17:31272761-31272979 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 75, 31 |
| Conread position: | 624-832 |
| Cow position: | chr17:13683986-13683775 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 58 |
Show alignments to all cow chromosomes.