Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 1-387 |
| Cow position: | chr18:4699247-4699639 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 3-253 |
| Cow position: | chr18:25670491-25670237 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 3-357 |
| Cow position: | chr18:24799203-24798849 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 121 |
| Conread position: | 3-357 |
| Cow position: | chr18:51804179-51803829 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 3-362 |
| Cow position: | chr18:51780091-51779738 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 62 |
| Conread position: | 3-373 |
| Cow position: | chr18:46883149-46883523 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 3-390 |
| Cow position: | chr18:46864838-46865228 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 3-401 |
| Cow position: | chr18:30228420-30228792 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 35, 63 |
| Conread position: | 36-372 |
| Cow position: | chr18:12779243-12778907 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 51-374 |
| Cow position: | chr18:29884732-29885045 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 8 |
| Conread position: | 54-357 |
| Cow position: | chr18:20945534-20945214 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 63-372 |
| Cow position: | chr18:11268723-11268410 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 75 |
| Conread position: | 113-338 |
| Cow position: | chr18:9017832-9017605 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 113-365 |
| Cow position: | chr18:54063689-54063436 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 119-402 |
| Cow position: | chr18:35087142-35086856 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 32, 48 |
| Conread position: | 125-365 |
| Cow position: | chr18:13788385-13788143 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 141-366 |
| Cow position: | chr18:3689454-3689239 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 141-372 |
| Cow position: | chr18:15807424-15807644 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 7 |
| Conread position: | 141-372 |
| Cow position: | chr18:54128357-54128136 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 7 |
| Conread position: | 144-366 |
| Cow position: | chr18:16054692-16054460 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 152-388 |
| Cow position: | chr18:4176883-4177118 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 81, 13 |
| Conread position: | 167-365 |
| Cow position: | chr18:32199358-32199557 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 91, 73 |
| Conread position: | 168-383 |
| Cow position: | chr18:25694264-25694049 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 170-351 |
| Cow position: | chr18:48310395-48310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 148 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 177-388 |
| Cow position: | chr18:52467713-52467499 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 180-382 |
| Cow position: | chr18:8211132-8211343 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 165 |
| Conread position: | 183-370 |
| Cow position: | chr18:44137681-44137872 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 47, 83 |
| Conread position: | 379-699 |
| Cow position: | chr18:52728289-52728599 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 390-835 |
| Cow position: | chr18:32318363-32318798 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 304 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 111, 22 |
| Conread position: | 407-832 |
| Cow position: | chr18:38989176-38988777 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 23, 87 |
| Conread position: | 417-831 |
| Cow position: | chr18:24873967-24873556 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 122, 185 |
| Conread position: | 420-828 |
| Cow position: | chr18:47650062-47650461 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 18 |
| Conread position: | 420-835 |
| Cow position: | chr18:10442515-10442093 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 424-831 |
| Cow position: | chr18:22531491-22531892 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 62, 102 |
| Conread position: | 430-832 |
| Cow position: | chr18:24519742-24519339 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 156, 73 |
| Conread position: | 433-832 |
| Cow position: | chr18:21093937-21094316 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 284, 9 |
| Conread position: | 439-804 |
| Cow position: | chr18:4293965-4294327 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 68 |
| Conread position: | 439-815 |
| Cow position: | chr18:50339808-50339454 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 246, 81 |
| Conread position: | 444-823 |
| Cow position: | chr18:18276314-18276689 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 103 |
| Conread position: | 445-835 |
| Cow position: | chr18:11403459-11403066 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 91, 6 |
| Conread position: | 467-811 |
| Cow position: | chr18:22712259-22711926 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 535-833 |
| Cow position: | chr18:4461977-4461692 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 538-823 |
| Cow position: | chr18:24003837-24004123 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 37, 62 |
| Conread position: | 538-835 |
| Cow position: | chr18:44042235-44042526 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 547-833 |
| Cow position: | chr18:8567838-8567544 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 22, 203 |
| Conread position: | 565-830 |
| Cow position: | chr18:19170730-19170464 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 571-815 |
| Cow position: | chr18:48417874-48417635 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 116, 28 |
| Conread position: | 577-835 |
| Cow position: | chr18:46872819-46872560 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 607-804 |
| Cow position: | chr18:9287062-9287257 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 80, 73 |
| Conread position: | 724-835 |
| Cow position: | chr18:8506763-8506874 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 19 |
Show alignments to all cow chromosomes.