Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-368 |
| Cow position: | chr20:24340464-24340098 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 3-370 |
| Cow position: | chr20:19030871-19030511 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 146, 29 |
| Conread position: | 3-373 |
| Cow position: | chr20:2226930-2227297 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 146, 33 |
| Conread position: | 3-387 |
| Cow position: | chr20:13282431-13282054 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 270 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 147, 23 |
| Conread position: | 3-387 |
| Cow position: | chr20:37059029-37059416 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 10-373 |
| Cow position: | chr20:41157215-41157577 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 22 |
| Conread position: | 25-303 |
| Cow position: | chr20:40203892-40204168 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 62, 37 |
| Conread position: | 51-302 |
| Cow position: | chr20:13080190-13079932 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 51-372 |
| Cow position: | chr20:22412675-22412978 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 64-403 |
| Cow position: | chr20:33098103-33098445 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 246 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 85-366 |
| Cow position: | chr20:8298091-8297812 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 107-318 |
| Cow position: | chr20:3076996-3077205 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 107-372 |
| Cow position: | chr20:31431112-31431354 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 113-339 |
| Cow position: | chr20:35181521-35181739 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 113-373 |
| Cow position: | chr20:1511809-1511561 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 113-373 |
| Cow position: | chr20:37910873-37911130 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 113-383 |
| Cow position: | chr20:13083268-13083540 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 20, 24 |
| Conread position: | 115-367 |
| Cow position: | chr20:36325877-36326131 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 140-372 |
| Cow position: | chr20:35251537-35251762 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 115, 8 |
| Conread position: | 141-372 |
| Cow position: | chr20:31439972-31440193 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 141-374 |
| Cow position: | chr20:13124815-13124577 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 93, 7 |
| Conread position: | 149-389 |
| Cow position: | chr20:33773216-33772972 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 16 |
| Conread position: | 153-364 |
| Cow position: | chr20:10508349-10508135 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 168-390 |
| Cow position: | chr20:19490648-19490422 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 178-369 |
| Cow position: | chr20:14592050-14592249 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 20, 166 |
| Conread position: | 181-373 |
| Cow position: | chr20:22682109-22681917 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 5 |
| Conread position: | 184-372 |
| Cow position: | chr20:42800472-42800291 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 157, 21 |
| Conread position: | 184-407 |
| Cow position: | chr20:649361-649137 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 50, 121 |
| Conread position: | 185-373 |
| Cow position: | chr20:35434606-35434794 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 8, 78 |
| Conread position: | 190-373 |
| Cow position: | chr20:23921563-23921750 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 119 |
| Conread position: | 194-376 |
| Cow position: | chr20:38032124-38031939 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 35, 107 |
| Conread position: | 414-711 |
| Cow position: | chr20:38543800-38543497 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 111 |
| Conread position: | 414-807 |
| Cow position: | chr20:13879999-13880374 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 302, 7 |
| Conread position: | 415-681 |
| Cow position: | chr20:25855335-25855067 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 121, 5 |
| Conread position: | 415-835 |
| Cow position: | chr20:931584-931174 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 279 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 249, 12 |
| Conread position: | 422-781 |
| Cow position: | chr20:8236031-8235680 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 123, 211 |
| Conread position: | 423-606 |
| Cow position: | chr20:36002414-36002599 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 424-801 |
| Cow position: | chr20:21963257-21963614 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 153, 55 |
| Conread position: | 428-809 |
| Cow position: | chr20:863889-864252 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 428-832 |
| Cow position: | chr20:2936771-2936371 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 58, 150 |
| Conread position: | 430-831 |
| Cow position: | chr20:24125937-24126309 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 99, 51 |
| Conread position: | 430-832 |
| Cow position: | chr20:41235140-41235538 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 215 |
| Conread position: | 442-832 |
| Cow position: | chr20:24548112-24547728 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 127, 55 |
| Conread position: | 445-801 |
| Cow position: | chr20:34123021-34123357 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 306, 54 |
| Conread position: | 445-835 |
| Cow position: | chr20:41004127-41003742 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 447-832 |
| Cow position: | chr20:2727154-2726773 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 149, 65 |
| Conread position: | 491-831 |
| Cow position: | chr20:35655392-35655730 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 505-837 |
| Cow position: | chr20:19234508-19234175 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 40, 107 |
| Conread position: | 510-834 |
| Cow position: | chr20:35710410-35710733 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 38 |
| Conread position: | 518-832 |
| Cow position: | chr20:31415701-31415387 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 127 |
| Conread position: | 538-747 |
| Cow position: | chr20:7401701-7401914 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 207 |
| Conread position: | 538-812 |
| Cow position: | chr20:21692925-21692662 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 546-832 |
| Cow position: | chr20:35829700-35829990 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 564-816 |
| Cow position: | chr20:38092114-38091865 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 86, 48 |
| Conread position: | 583-833 |
| Cow position: | chr20:28501946-28502197 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 104, 61 |
| Conread position: | 589-832 |
| Cow position: | chr20:9928106-9927863 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 98, 169 |
| Conread position: | 591-835 |
| Cow position: | chr20:19137967-19138212 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 94, 53 |
| Conread position: | 595-832 |
| Cow position: | chr20:36002822-36003050 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 90 |
| Conread position: | 611-833 |
| Cow position: | chr20:3129735-3129510 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 690-816 |
| Cow position: | chr20:5770028-5769901 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 21, 43 |
Show alignments to all cow chromosomes.