Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-396 |
| Cow position: | chr21:20015861-20016263 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 5-243 |
| Cow position: | chr21:12208398-12208634 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 5-361 |
| Cow position: | chr21:47356357-47356714 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 89, 15 |
| Conread position: | 14-404 |
| Cow position: | chr21:21407530-21407918 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 32-322 |
| Cow position: | chr21:41070728-41070439 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 39-330 |
| Cow position: | chr21:35322952-35322656 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 52, 25 |
| Conread position: | 39-401 |
| Cow position: | chr21:28768510-28768144 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 51-364 |
| Cow position: | chr21:8375467-8375770 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 110-388 |
| Cow position: | chr21:19092466-19092733 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 39, 6 |
| Conread position: | 112-387 |
| Cow position: | chr21:17788070-17788357 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 113-369 |
| Cow position: | chr21:13861130-13860876 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 120, 41 |
| Conread position: | 113-373 |
| Cow position: | chr21:18171730-18171988 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 113-375 |
| Cow position: | chr21:18571768-18572030 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 113-391 |
| Cow position: | chr21:42179869-42179589 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 114-372 |
| Cow position: | chr21:14787306-14787557 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 115-353 |
| Cow position: | chr21:7402619-7402856 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 122-383 |
| Cow position: | chr21:47962730-47962473 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 13 |
| Conread position: | 124-370 |
| Cow position: | chr21:32404740-32404499 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 124-444 |
| Cow position: | chr21:36212072-36212380 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 141-372 |
| Cow position: | chr21:6729339-6729115 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 7 |
| Conread position: | 141-373 |
| Cow position: | chr21:10556334-10556566 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 90, 8 |
| Conread position: | 167-383 |
| Cow position: | chr21:3475433-3475218 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 34, 100 |
| Conread position: | 168-367 |
| Cow position: | chr21:42227880-42228077 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 115 |
| Conread position: | 168-408 |
| Cow position: | chr21:19866807-19867040 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 111 |
| Conread position: | 178-374 |
| Cow position: | chr21:41566095-41565892 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 184-387 |
| Cow position: | chr21:10170561-10170360 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 66, 167 |
| Conread position: | 216-374 |
| Cow position: | chr21:36210036-36210195 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 100 |
| Conread position: | 239-382 |
| Cow position: | chr21:4054592-4054736 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 67, 96 |
| Conread position: | 365-814 |
| Cow position: | chr21:4931444-4931880 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 10, 115 |
| Conread position: | 395-622 |
| Cow position: | chr21:2844712-2844491 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 144, 9 |
| Conread position: | 395-626 |
| Cow position: | chr21:3637896-3637666 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 409-835 |
| Cow position: | chr21:11421790-11422197 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 237, 24 |
| Conread position: | 414-598 |
| Cow position: | chr21:30769043-30768859 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 122, 7 |
| Conread position: | 414-782 |
| Cow position: | chr21:15946661-15947018 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 153, 17 |
| Conread position: | 415-825 |
| Cow position: | chr21:47384802-47385202 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 273, 10 |
| Conread position: | 415-829 |
| Cow position: | chr21:22490254-22490667 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 91, 16 |
| Conread position: | 422-832 |
| Cow position: | chr21:18769874-18770285 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 163, 27 |
| Conread position: | 422-833 |
| Cow position: | chr21:20996877-20996464 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 60 |
| Conread position: | 422-841 |
| Cow position: | chr21:2239267-2238842 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 293 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 424-716 |
| Cow position: | chr21:40153893-40154179 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 428-830 |
| Cow position: | chr21:37643433-37643034 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 45, 36 |
| Conread position: | 439-673 |
| Cow position: | chr21:26421439-26421207 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 90, 62 |
| Conread position: | 439-811 |
| Cow position: | chr21:33324815-33324446 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 100, 62 |
| Conread position: | 442-859 |
| Cow position: | chr21:39187444-39187850 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 95, 182 |
| Conread position: | 447-832 |
| Cow position: | chr21:43363275-43363657 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 450-832 |
| Cow position: | chr21:40528686-40528298 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 89, 22 |
| Conread position: | 453-835 |
| Cow position: | chr21:39023997-39023626 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 120, 41 |
| Conread position: | 468-829 |
| Cow position: | chr21:35828108-35827750 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 61, 79 |
| Conread position: | 469-835 |
| Cow position: | chr21:41204552-41204194 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 84 |
| Conread position: | 477-680 |
| Cow position: | chr21:4980007-4980211 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 52, 116 |
| Conread position: | 492-806 |
| Cow position: | chr21:8320812-8321128 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 77, 27 |
| Conread position: | 504-776 |
| Cow position: | chr21:27771114-27771385 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 181, 71 |
| Conread position: | 526-832 |
| Cow position: | chr21:14113944-14114255 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 538-808 |
| Cow position: | chr21:14735743-14735485 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 180, 34 |
| Conread position: | 561-804 |
| Cow position: | chr21:41914999-41914759 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 124, 29 |
| Conread position: | 566-832 |
| Cow position: | chr21:745017-744749 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 576-832 |
| Cow position: | chr21:43286187-43285925 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 584-813 |
| Cow position: | chr21:27769540-27769310 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 103, 96 |
| Conread position: | 611-832 |
| Cow position: | chr21:32554032-32553813 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 74, 132 |
| Conread position: | 648-823 |
| Cow position: | chr21:4470072-4470239 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 39, 25 |
Show alignments to all cow chromosomes.