Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-303 |
| Cow position: | chr22:8133427-8133716 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 138, 56 |
| Conread position: | 3-372 |
| Cow position: | chr22:8121197-8121551 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 3-372 |
| Cow position: | chr22:17926344-17926717 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 124 |
| Conread position: | 3-388 |
| Cow position: | chr22:19093441-19093064 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 3-401 |
| Cow position: | chr22:27748268-27747869 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 5-263 |
| Cow position: | chr22:28401633-28401373 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 86, 21 |
| Conread position: | 29-355 |
| Cow position: | chr22:18994057-18993729 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 35 |
| Conread position: | 39-383 |
| Cow position: | chr22:674751-674410 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 107-364 |
| Cow position: | chr22:18698444-18698704 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 44, 60 |
| Conread position: | 113-368 |
| Cow position: | chr22:2002362-2002101 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 113-380 |
| Cow position: | chr22:17363193-17363457 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 113-387 |
| Cow position: | chr22:2527200-2527472 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 113-387 |
| Cow position: | chr22:6702848-6702569 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 113-391 |
| Cow position: | chr22:35530872-35531150 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 114-330 |
| Cow position: | chr22:13956309-13956521 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 114-372 |
| Cow position: | chr22:27076963-27076712 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 114-374 |
| Cow position: | chr22:19971080-19971343 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 114-383 |
| Cow position: | chr22:17310490-17310762 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 115-387 |
| Cow position: | chr22:6438089-6437818 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 124-373 |
| Cow position: | chr22:1610974-1610729 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 132-372 |
| Cow position: | chr22:4997824-4998062 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 141-372 |
| Cow position: | chr22:30912130-30911906 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 86, 7 |
| Conread position: | 141-401 |
| Cow position: | chr22:302843-303094 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 201, 7 |
| Conread position: | 144-355 |
| Cow position: | chr22:39459037-39459248 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 165-383 |
| Cow position: | chr22:42035549-42035778 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 63, 90 |
| Conread position: | 167-325 |
| Cow position: | chr22:311477-311645 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 167-334 |
| Cow position: | chr22:12752639-12752811 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 143 |
| Conread position: | 167-355 |
| Cow position: | chr22:39503456-39503264 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 145 |
| Conread position: | 167-372 |
| Cow position: | chr22:3420964-3421176 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 176 |
| Conread position: | 168-296 |
| Cow position: | chr22:10627589-10627456 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 168-390 |
| Cow position: | chr22:23842263-23842046 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 153 |
| Conread position: | 175-396 |
| Cow position: | chr22:17874210-17873988 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 55, 129 |
| Conread position: | 181-372 |
| Cow position: | chr22:2377034-2376836 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 162 |
| Conread position: | 182-368 |
| Cow position: | chr22:13928902-13928709 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 183-366 |
| Cow position: | chr22:26786924-26786740 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 223-370 |
| Cow position: | chr22:27389026-27388878 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 391-835 |
| Cow position: | chr22:17286658-17286223 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 415-831 |
| Cow position: | chr22:34336016-34335608 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 14 |
| Conread position: | 424-823 |
| Cow position: | chr22:29173848-29173448 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 76 |
| Conread position: | 427-807 |
| Cow position: | chr22:17130025-17129651 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 428-832 |
| Cow position: | chr22:33559828-33559419 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 75, 39 |
| Conread position: | 429-752 |
| Cow position: | chr22:28779859-28780178 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 104, 162 |
| Conread position: | 430-709 |
| Cow position: | chr22:31679089-31678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 71, 118 |
| Conread position: | 431-831 |
| Cow position: | chr22:13583877-13584268 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 213, 144 |
| Conread position: | 439-815 |
| Cow position: | chr22:6243947-6243579 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 128, 70 |
| Conread position: | 439-835 |
| Cow position: | chr22:21344984-21344597 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 449-832 |
| Cow position: | chr22:22018533-22018165 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 55, 100 |
| Conread position: | 467-835 |
| Cow position: | chr22:9066574-9066216 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 62, 174 |
| Conread position: | 507-837 |
| Cow position: | chr22:13266628-13266304 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 77 |
| Conread position: | 538-832 |
| Cow position: | chr22:23648779-23648491 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 31, 49 |
| Conread position: | 591-828 |
| Cow position: | chr22:44686513-44686750 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 86 |
| Conread position: | 613-832 |
| Cow position: | chr22:43618575-43618789 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 78, 51 |
| Conread position: | 635-813 |
| Cow position: | chr22:20939622-20939443 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 6 |
| Conread position: | 657-816 |
| Cow position: | chr22:20937724-20937563 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 685-832 |
| Cow position: | chr22:35820958-35820809 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 690-816 |
| Cow position: | chr22:7266873-7267001 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 691-835 |
| Cow position: | chr22:33541567-33541712 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 53 |
Show alignments to all cow chromosomes.