Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-251 |
| Cow position: | chr25:20247803-20248047 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 3-364 |
| Cow position: | chr25:22265458-22265819 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 3-368 |
| Cow position: | chr25:15632309-15632670 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 29 |
| Conread position: | 3-370 |
| Cow position: | chr25:22272322-22271952 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 3-371 |
| Cow position: | chr25:6257144-6257517 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 62 |
| Conread position: | 3-372 |
| Cow position: | chr25:29816584-29816954 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 3-405 |
| Cow position: | chr25:15479459-15479856 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 30 |
| Conread position: | 51-372 |
| Cow position: | chr25:31580538-31580218 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 107-300 |
| Cow position: | chr25:41167680-41167876 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 107-364 |
| Cow position: | chr25:15914715-15914978 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 7, 62 |
| Conread position: | 113-364 |
| Cow position: | chr25:5868492-5868750 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 113-374 |
| Cow position: | chr25:6261524-6261779 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 113-374 |
| Cow position: | chr25:17374281-17374539 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 113-374 |
| Cow position: | chr25:26100116-26099847 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 113-401 |
| Cow position: | chr25:18679496-18679213 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 138-374 |
| Cow position: | chr25:9597684-9597448 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 140-372 |
| Cow position: | chr25:8556815-8556593 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 81, 8 |
| Conread position: | 167-368 |
| Cow position: | chr25:19017810-19017604 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 32, 175 |
| Conread position: | 167-373 |
| Cow position: | chr25:31367969-31368185 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 34, 179 |
| Conread position: | 167-374 |
| Cow position: | chr25:15966541-15966326 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 34, 185 |
| Conread position: | 170-337 |
| Cow position: | chr25:7668260-7668095 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 113 |
| Conread position: | 170-387 |
| Cow position: | chr25:15961085-15960865 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 194-323 |
| Cow position: | chr25:6565961-6566095 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 413-832 |
| Cow position: | chr25:32708714-32708314 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 417-832 |
| Cow position: | chr25:23941962-23941558 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 157, 84 |
| Conread position: | 420-832 |
| Cow position: | chr25:5488543-5488137 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 93 |
| Conread position: | 421-813 |
| Cow position: | chr25:25549478-25549099 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 167, 74 |
| Conread position: | 422-832 |
| Cow position: | chr25:17147382-17147789 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 428-814 |
| Cow position: | chr25:39037173-39036794 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 76, 94 |
| Conread position: | 428-832 |
| Cow position: | chr25:13724203-13724604 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 151, 22 |
| Conread position: | 435-835 |
| Cow position: | chr25:8600939-8601332 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 123 |
| Conread position: | 439-816 |
| Cow position: | chr25:17518556-17518179 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 116 |
| Conread position: | 443-741 |
| Cow position: | chr25:3436993-3437289 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 122, 42 |
| Conread position: | 450-804 |
| Cow position: | chr25:14825187-14825539 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 472-816 |
| Cow position: | chr25:13761119-13760766 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 65, 93 |
| Conread position: | 477-835 |
| Cow position: | chr25:27964455-27964105 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 487-832 |
| Cow position: | chr25:11951837-11952165 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 52, 108 |
| Conread position: | 503-831 |
| Cow position: | chr25:5977202-5976874 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 546-812 |
| Cow position: | chr25:41151962-41151694 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 50 |
| Conread position: | 555-805 |
| Cow position: | chr25:28617089-28617338 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 35 |
| Conread position: | 584-817 |
| Cow position: | chr25:1855042-1855275 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 588-835 |
| Cow position: | chr25:32720668-32720420 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 589-832 |
| Cow position: | chr25:8511206-8511447 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 609-832 |
| Cow position: | chr25:9648488-9648714 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 76, 67 |
Show alignments to all cow chromosomes.