Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-351 |
| Cow position: | chr27:14681256-14680926 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 22, 30 |
| Conread position: | 3-374 |
| Cow position: | chr27:3911920-3912294 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 3-374 |
| Cow position: | chr27:14139366-14138994 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 56 |
| Conread position: | 3-374 |
| Cow position: | chr27:14151836-14152215 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 3-401 |
| Cow position: | chr27:23052469-23052866 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 50 |
| Conread position: | 5-316 |
| Cow position: | chr27:18109873-18109559 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 80-388 |
| Cow position: | chr27:29498671-29498979 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 88 |
| Conread position: | 85-406 |
| Cow position: | chr27:29358763-29359081 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 36 |
| Conread position: | 96-387 |
| Cow position: | chr27:20754463-20754178 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 110-391 |
| Cow position: | chr27:29996013-29996292 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 8 |
| Conread position: | 112-321 |
| Cow position: | chr27:26502057-26501849 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 112-374 |
| Cow position: | chr27:14181753-14181498 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 113-372 |
| Cow position: | chr27:23877519-23877774 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 113-378 |
| Cow position: | chr27:7086240-7086502 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 114-372 |
| Cow position: | chr27:30988309-30988054 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 125-373 |
| Cow position: | chr27:22567827-22567581 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 141-356 |
| Cow position: | chr27:2392457-2392663 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 7 |
| Conread position: | 147-373 |
| Cow position: | chr27:3695085-3694865 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 148-372 |
| Cow position: | chr27:18467508-18467293 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 150-352 |
| Cow position: | chr27:530682-530880 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 101, 15 |
| Conread position: | 167-373 |
| Cow position: | chr27:3082955-3082745 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 143 |
| Conread position: | 168-368 |
| Cow position: | chr27:11027892-11027697 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 168-371 |
| Cow position: | chr27:22803648-22803841 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 173, 62 |
| Conread position: | 168-372 |
| Cow position: | chr27:58112-58311 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 116 |
| Conread position: | 170-356 |
| Cow position: | chr27:23190482-23190672 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 59, 89 |
| Conread position: | 170-382 |
| Cow position: | chr27:26813137-26812925 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 178-373 |
| Cow position: | chr27:14333700-14333505 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 111 |
| Conread position: | 181-372 |
| Cow position: | chr27:7634448-7634642 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 48, 124 |
| Conread position: | 182-335 |
| Cow position: | chr27:22123899-22123741 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 414-809 |
| Cow position: | chr27:29259669-29260053 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 87, 6 |
| Conread position: | 415-829 |
| Cow position: | chr27:15261061-15261462 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 9, 36 |
| Conread position: | 416-832 |
| Cow position: | chr27:28088653-28088238 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 142, 12 |
| Conread position: | 421-761 |
| Cow position: | chr27:15030854-15030506 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 108, 47 |
| Conread position: | 423-600 |
| Cow position: | chr27:5795829-5796001 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 428-832 |
| Cow position: | chr27:9741223-9740826 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 323, 116 |
| Conread position: | 429-830 |
| Cow position: | chr27:17460215-17460613 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 138, 91 |
| Conread position: | 434-683 |
| Cow position: | chr27:4810076-4809822 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 99 |
| Conread position: | 439-832 |
| Cow position: | chr27:18920640-18921040 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 25, 181 |
| Conread position: | 452-815 |
| Cow position: | chr27:2895751-2895387 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 115, 46 |
| Conread position: | 456-616 |
| Cow position: | chr27:14927368-14927206 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 538-814 |
| Cow position: | chr27:17021902-17022182 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 538-835 |
| Cow position: | chr27:3197665-3197368 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 110, 105 |
| Conread position: | 541-816 |
| Cow position: | chr27:23234598-23234874 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 545-826 |
| Cow position: | chr27:7766961-7766680 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 547-826 |
| Cow position: | chr27:15763356-15763063 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 155 |
| Conread position: | 564-725 |
| Cow position: | chr27:7649860-7650026 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 578-832 |
| Cow position: | chr27:7579515-7579767 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 150, 82 |
| Conread position: | 732-835 |
| Cow position: | chr27:28909354-28909458 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.