Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-323 |
| Cow position: | chr29:30723308-30723625 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 90, 62 |
| Conread position: | 3-366 |
| Cow position: | chr29:33434940-33435311 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 61 |
| Conread position: | 3-372 |
| Cow position: | chr29:30691360-30690988 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 3-383 |
| Cow position: | chr29:5624395-5624778 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 3-387 |
| Cow position: | chr29:12897387-12897018 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 227, 29 |
| Conread position: | 3-387 |
| Cow position: | chr29:28847371-28846984 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 61 |
| Conread position: | 5-388 |
| Cow position: | chr29:28794554-28794941 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 59 |
| Conread position: | 32-368 |
| Cow position: | chr29:15852347-15852675 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 32-372 |
| Cow position: | chr29:6389673-6390016 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 51-372 |
| Cow position: | chr29:36638631-36638944 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 82, 14 |
| Conread position: | 69-334 |
| Cow position: | chr29:5523177-5523441 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 77-390 |
| Cow position: | chr29:18183169-18182861 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 64, 90 |
| Conread position: | 85-338 |
| Cow position: | chr29:31236299-31236556 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 113-372 |
| Cow position: | chr29:38051278-38051016 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 113-404 |
| Cow position: | chr29:11449963-11449671 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 113-408 |
| Cow position: | chr29:26596806-26597099 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 118-336 |
| Cow position: | chr29:30715014-30714800 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 79, 45 |
| Conread position: | 123-372 |
| Cow position: | chr29:42198803-42198556 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 148-330 |
| Cow position: | chr29:2199102-2198935 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 150-339 |
| Cow position: | chr29:31218565-31218748 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 168-396 |
| Cow position: | chr29:8940821-8940592 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 62, 93 |
| Conread position: | 178-347 |
| Cow position: | chr29:44130802-44130975 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 183-374 |
| Cow position: | chr29:20706483-20706674 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 159 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 68, 7 |
| Conread position: | 190-383 |
| Cow position: | chr29:32844713-32844518 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 192-368 |
| Cow position: | chr29:30690291-30690466 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 139 |
| Conread position: | 238-374 |
| Cow position: | chr29:16897607-16897472 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 414-814 |
| Cow position: | chr29:19043553-19043173 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 122, 13 |
| Conread position: | 422-686 |
| Cow position: | chr29:39218101-39217839 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 27 |
| Conread position: | 430-835 |
| Cow position: | chr29:24012316-24011934 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 138, 52 |
| Conread position: | 440-832 |
| Cow position: | chr29:31340564-31340963 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 28 |
| Conread position: | 447-814 |
| Cow position: | chr29:5169281-5169643 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 101 |
| Conread position: | 452-832 |
| Cow position: | chr29:29192951-29192589 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 235, 25 |
| Conread position: | 458-741 |
| Cow position: | chr29:34005941-34005669 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 105, 50 |
| Conread position: | 459-832 |
| Cow position: | chr29:21519107-21519463 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 32, 63 |
| Conread position: | 459-835 |
| Cow position: | chr29:33594215-33594587 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 42, 62 |
| Conread position: | 467-832 |
| Cow position: | chr29:28629368-28629729 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 478-812 |
| Cow position: | chr29:12415592-12415921 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 114 |
| Conread position: | 496-831 |
| Cow position: | chr29:11256307-11255978 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 49, 132 |
| Conread position: | 528-740 |
| Cow position: | chr29:28510567-28510784 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 130 |
| Conread position: | 543-789 |
| Cow position: | chr29:27692458-27692214 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 144, 34 |
| Conread position: | 546-828 |
| Cow position: | chr29:8894634-8894916 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 100 |
| Conread position: | 561-814 |
| Cow position: | chr29:24146168-24146428 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 29, 85 |
| Conread position: | 584-799 |
| Cow position: | chr29:8876951-8876733 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 685-828 |
| Cow position: | chr29:5905054-5905198 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 57 |
| Conread position: | 697-835 |
| Cow position: | chr29:36298120-36297982 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 79 |
Show alignments to all cow chromosomes.