Cow genome map

Conread name: Ss1.1-Pig4-TMW8039P19.5

Conread position: 3-292
Cow position: chr4:38925832-38925538 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 213
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 20, 64

Conread position: 3-366
Cow position: chr4:54141811-54142171 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 265
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 33, 14

Conread position: 3-367
Cow position: chr4:43465465-43465824 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 12

Conread position: 3-368
Cow position: chr4:18005968-18006342 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 252
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 20, 63

Conread position: 3-369
Cow position: chr4:14480052-14480410 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 23

Conread position: 3-371
Cow position: chr4:58431498-58431870 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 31

Conread position: 3-388
Cow position: chr4:61152386-61152003 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 20

Conread position: 4-388
Cow position: chr4:42981259-42980872 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 28

Conread position: 5-390
Cow position: chr4:66836051-66835663 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 268
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 87, 129

Conread position: 15-383
Cow position: chr4:34324174-34324540 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 241
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 107, 25

Conread position: 51-372
Cow position: chr4:63393907-63394217 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 230
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 99, 13

Conread position: 51-372
Cow position: chr4:63398500-63398814 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 42, 13

Conread position: 85-408
Cow position: chr4:3868832-3868514 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 15

Conread position: 91-373
Cow position: chr4:32024567-32024846 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 58, 9

Conread position: 93-368
Cow position: chr4:42485570-42485298 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 40, 7

Conread position: 106-368
Cow position: chr4:11169303-11169036 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 8, 63

Conread position: 113-337
Cow position: chr4:45451552-45451340 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 36

Conread position: 113-368
Cow position: chr4:43420579-43420836 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 54

Conread position: 113-372
Cow position: chr4:57717049-57717304 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 10, 40

Conread position: 113-372
Cow position: chr4:67568167-67567916 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 190
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 36, 54

Conread position: 113-373
Cow position: chr4:28286068-28285802 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 20, 36

Conread position: 113-374
Cow position: chr4:44086182-44085919 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 54

Conread position: 113-374
Cow position: chr4:48236163-48235904 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 117, 35

Conread position: 113-382
Cow position: chr4:13150561-13150293 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 195
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 38, 54

Conread position: 113-401
Cow position: chr4:44621885-44621599 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 24, 19

Conread position: 114-307
Cow position: chr4:12702093-12701902 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 54

Conread position: 115-374
Cow position: chr4:59531809-59531547 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 19, 36

Conread position: 118-401
Cow position: chr4:64673477-64673751 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 197
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 49

Conread position: 122-383
Cow position: chr4:12226872-12226617 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 79, 13

Conread position: 141-372
Cow position: chr4:3463971-3463741 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 92, 11

Conread position: 141-372
Cow position: chr4:23122461-23122682 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 86, 7

Conread position: 141-372
Cow position: chr4:60093901-60094120 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 89, 7

Conread position: 143-372
Cow position: chr4:31596635-31596865 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 5

Conread position: 148-372
Cow position: chr4:47132615-47132400 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 79, 17

Conread position: 167-369
Cow position: chr4:5228743-5228948 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 34, 142

Conread position: 167-373
Cow position: chr4:12652092-12652302 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 169
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 34, 143

Conread position: 167-383
Cow position: chr4:14528318-14528538 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 169
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 34, 143

Conread position: 168-272
Cow position: chr4:44753902-44754012 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 168-372
Cow position: chr4:29905588-29905785 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 168-383
Cow position: chr4:64369572-64369785 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 28, 62

Conread position: 168-383
Cow position: chr4:65944507-65944719 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 28, 139

Conread position: 182-373
Cow position: chr4:28223991-28223797 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 16, 0

Conread position: 183-335
Cow position: chr4:28871395-28871548 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 95

Conread position: 201-358
Cow position: chr4:57940969-57940814 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 213-374
Cow position: chr4:43393188-43393346 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 46

Conread position: 414-832
Cow position: chr4:38052387-38051992 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 287
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 9, 42

Conread position: 415-616
Cow position: chr4:10863261-10863063 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 10

Conread position: 416-626
Cow position: chr4:23517464-23517667 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 169, 68

Conread position: 416-791
Cow position: chr4:37053865-37054230 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 35

Conread position: 416-807
Cow position: chr4:54642328-54641950 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 267
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 7, 110

Conread position: 417-832
Cow position: chr4:38462395-38462808 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 179

Conread position: 417-832
Cow position: chr4:45026887-45027298 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 286
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 38, 104

Conread position: 420-835
Cow position: chr4:45172253-45171829 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 286
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 41

Conread position: 422-705
Cow position: chr4:6366289-6366562 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 187
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 125, 37

Conread position: 422-832
Cow position: chr4:43355924-43356330 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 278
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 21, 79

Conread position: 424-805
Cow position: chr4:21975752-21976121 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 255
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 294, 80

Conread position: 428-605
Cow position: chr4:51823481-51823302 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 101, 0

Conread position: 428-699
Cow position: chr4:63928805-63928546 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 218, 57

Conread position: 428-832
Cow position: chr4:18137126-18136727 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 97

Conread position: 428-835
Cow position: chr4:35636765-35637168 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 268
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 119, 82

Conread position: 428-839
Cow position: chr4:64422353-64421958 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 281
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 73, 22

Conread position: 430-835
Cow position: chr4:40892737-40892350 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 277
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 145, 65

Conread position: 438-835
Cow position: chr4:32550749-32551142 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 267
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 97, 12

Conread position: 439-802
Cow position: chr4:69221298-69221652 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 248
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 55, 13

Conread position: 439-818
Cow position: chr4:57604029-57604409 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 254
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 62, 36

Conread position: 439-832
Cow position: chr4:1536830-1537202 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 24, 30

Conread position: 440-812
Cow position: chr4:9598424-9598067 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 251
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 61, 130

Conread position: 441-812
Cow position: chr4:33977390-33977019 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 62, 118

Conread position: 442-832
Cow position: chr4:53707167-53707546 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 262
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 59, 40

Conread position: 452-831
Cow position: chr4:36705931-36705565 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 257
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 86, 58

Conread position: 453-780
Cow position: chr4:49030889-49030549 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 226
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 70, 167

Conread position: 458-816
Cow position: chr4:29176987-29177333 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 232
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 280, 86

Conread position: 460-805
Cow position: chr4:8514825-8514484 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 222
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 187

Conread position: 467-856
Cow position: chr4:31972227-31971857 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 262
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 69, 82

Conread position: 468-816
Cow position: chr4:5632954-5632610 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 229
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 99, 77

Conread position: 497-832
Cow position: chr4:56555569-56555909 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 260

Conread position: 538-816
Cow position: chr4:15895400-15895110 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 32, 52

Conread position: 540-835
Cow position: chr4:60385593-60385300 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 213
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 24, 38

Conread position: 542-811
Cow position: chr4:26727420-26727163 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 29, 102

Conread position: 546-832
Cow position: chr4:8274-7990 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 33, 166

Conread position: 564-798
Cow position: chr4:56467041-56467274 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 121, 32

Conread position: 564-809
Cow position: chr4:56564895-56565134 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 82, 63

Conread position: 591-832
Cow position: chr4:65453678-65453913 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 19, 53

Conread position: 591-835
Cow position: chr4:7773053-7772807 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 96, 81

Conread position: 592-821
Cow position: chr4:31695913-31696143 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 20, 51

Conread position: 597-835
Cow position: chr4:23339492-23339732 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 45, 50

Conread position: 609-832
Cow position: chr4:57304305-57304084 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 32

Conread position: 651-831
Cow position: chr4:8122601-8122783 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 651-835
Cow position: chr4:12819430-12819250 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 24

Conread position: 690-832
Cow position: chr4:10957611-10957466 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 32, 70

Conread position: 690-832
Cow position: chr4:11614754-11614609 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 56

Conread position: 691-835
Cow position: chr4:40910623-40910479 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 62, 27

Show alignments to all cow chromosomes.