Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-323 |
| Cow position: | chr5:39800888-39800559 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 91, 62 |
| Conread position: | 3-330 |
| Cow position: | chr5:47840075-47839748 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 3-368 |
| Cow position: | chr5:63515977-63515616 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 30 |
| Conread position: | 3-372 |
| Cow position: | chr5:66106551-66106922 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 29 |
| Conread position: | 3-374 |
| Cow position: | chr5:47619676-47619305 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 3-382 |
| Cow position: | chr5:48275365-48274984 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 269 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 89, 56 |
| Conread position: | 3-388 |
| Cow position: | chr5:64104088-64103703 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 56 |
| Conread position: | 3-391 |
| Cow position: | chr5:47771985-47771599 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 3-401 |
| Cow position: | chr5:23628362-23628755 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 59 |
| Conread position: | 3-427 |
| Cow position: | chr5:19914428-19914848 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 139 |
| Conread position: | 4-374 |
| Cow position: | chr5:25896497-25896133 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 60 |
| Conread position: | 5-363 |
| Cow position: | chr5:72939745-72939388 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 5-372 |
| Cow position: | chr5:29537177-29536797 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 5-383 |
| Cow position: | chr5:64796077-64796458 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 14-375 |
| Cow position: | chr5:29075897-29076248 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 77, 51 |
| Conread position: | 18-357 |
| Cow position: | chr5:2441351-2441014 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 14 |
| Conread position: | 23-348 |
| Cow position: | chr5:42785686-42785361 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 23-387 |
| Cow position: | chr5:18584923-18585289 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 42 |
| Conread position: | 51-255 |
| Cow position: | chr5:18709854-18710049 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 98, 16 |
| Conread position: | 51-373 |
| Cow position: | chr5:75573426-75573104 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 97, 13 |
| Conread position: | 51-387 |
| Cow position: | chr5:21514897-21514580 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 54-390 |
| Cow position: | chr5:42183444-42183107 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 11 |
| Conread position: | 85-401 |
| Cow position: | chr5:30204546-30204850 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 112-346 |
| Cow position: | chr5:7393930-7393693 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 113-338 |
| Cow position: | chr5:49920328-49920554 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 113-369 |
| Cow position: | chr5:23742395-23742648 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 113-372 |
| Cow position: | chr5:21042924-21043187 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 113-372 |
| Cow position: | chr5:70705025-70705279 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 113-374 |
| Cow position: | chr5:9969511-9969771 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 113-374 |
| Cow position: | chr5:58439310-58439553 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 114-372 |
| Cow position: | chr5:47357823-47358072 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 38 |
| Conread position: | 114-372 |
| Cow position: | chr5:60969253-60969506 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 115-371 |
| Cow position: | chr5:70720736-70720485 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 124-374 |
| Cow position: | chr5:42820233-42820483 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 125-352 |
| Cow position: | chr5:7283769-7283544 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 141-368 |
| Cow position: | chr5:64038937-64039157 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 141-372 |
| Cow position: | chr5:13421000-13421221 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 7 |
| Conread position: | 144-333 |
| Cow position: | chr5:73480286-73480099 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 144-383 |
| Cow position: | chr5:24888644-24888884 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 166-339 |
| Cow position: | chr5:27995935-27996113 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 167-373 |
| Cow position: | chr5:47996421-47996210 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 146 |
| Conread position: | 167-374 |
| Cow position: | chr5:47991624-47991410 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 31, 176 |
| Conread position: | 167-384 |
| Cow position: | chr5:8764367-8764588 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 34, 143 |
| Conread position: | 168-372 |
| Cow position: | chr5:42099979-42099782 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 171, 33 |
| Conread position: | 168-383 |
| Cow position: | chr5:48135736-48135949 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 50 |
| Conread position: | 168-388 |
| Cow position: | chr5:12219239-12219461 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 169-334 |
| Cow position: | chr5:18775536-18775373 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 177-374 |
| Cow position: | chr5:45197381-45197186 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 158, 36 |
| Conread position: | 181-374 |
| Cow position: | chr5:18657625-18657826 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 163 |
| Conread position: | 182-370 |
| Cow position: | chr5:17737146-17737339 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 181 |
| Conread position: | 182-392 |
| Cow position: | chr5:5058539-5058746 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 188-362 |
| Cow position: | chr5:51921289-51921109 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 412-666 |
| Cow position: | chr5:47773995-47774256 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 414-832 |
| Cow position: | chr5:29586053-29586459 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 88 |
| Conread position: | 415-616 |
| Cow position: | chr5:49233474-49233674 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 415-715 |
| Cow position: | chr5:17539581-17539284 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 269, 117 |
| Conread position: | 416-810 |
| Cow position: | chr5:29882652-29883042 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 5 |
| Conread position: | 417-830 |
| Cow position: | chr5:31738686-31739094 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 91, 163 |
| Conread position: | 423-806 |
| Cow position: | chr5:69333113-69333478 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 31 |
| Conread position: | 425-834 |
| Cow position: | chr5:12238876-12238462 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 222 |
| Conread position: | 430-831 |
| Cow position: | chr5:3978534-3978918 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 160, 67 |
| Conread position: | 431-832 |
| Cow position: | chr5:44860658-44861052 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 73, 119 |
| Conread position: | 431-835 |
| Cow position: | chr5:37175925-37176325 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 107, 246 |
| Conread position: | 458-832 |
| Cow position: | chr5:42731064-42730702 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 501-832 |
| Cow position: | chr5:14527960-14527634 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 503-832 |
| Cow position: | chr5:13207478-13207152 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 533-835 |
| Cow position: | chr5:9563467-9563154 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 217 |
| Conread position: | 537-816 |
| Cow position: | chr5:72626277-72626546 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 543-832 |
| Cow position: | chr5:32515857-32516151 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 543-832 |
| Cow position: | chr5:49165512-49165799 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 543-832 |
| Cow position: | chr5:63051556-63051834 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 559-829 |
| Cow position: | chr5:44624411-44624136 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 52 |
| Conread position: | 564-765 |
| Cow position: | chr5:74679304-74679503 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 185, 13 |
| Conread position: | 570-829 |
| Cow position: | chr5:19245184-19245448 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 589-831 |
| Cow position: | chr5:21619627-21619876 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 159 |
| Conread position: | 591-812 |
| Cow position: | chr5:9715026-9714813 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 158, 91 |
| Conread position: | 592-835 |
| Cow position: | chr5:23320818-23320572 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 632-828 |
| Cow position: | chr5:45731890-45731696 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 690-835 |
| Cow position: | chr5:38564321-38564176 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 723-816 |
| Cow position: | chr5:22632508-22632601 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 723-838 |
| Cow position: | chr5:35553851-35553966 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 96 |
Show alignments to all cow chromosomes.