Cow genome map

Conread name: Ss1.1-Pig4-TMW8039P19.5

Conread position: 3-368
Cow position: chr6:24803555-24803922 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 62

Conread position: 3-372
Cow position: chr6:37884903-37884529 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 61

Conread position: 3-387
Cow position: chr6:49801610-49801224 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 62

Conread position: 3-401
Cow position: chr6:38939940-38939544 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 55

Conread position: 3-401
Cow position: chr6:62859967-62860360 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 283
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 89, 61

Conread position: 32-390
Cow position: chr6:47226258-47225899 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 33

Conread position: 47-383
Cow position: chr6:16604699-16604367 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 19

Conread position: 51-373
Cow position: chr6:44496033-44496349 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 8

Conread position: 113-374
Cow position: chr6:26451183-26451443 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 140, 35

Conread position: 113-374
Cow position: chr6:60794858-60795121 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 36, 54

Conread position: 113-378
Cow position: chr6:47228734-47229000 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 190
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 21, 51

Conread position: 113-388
Cow position: chr6:5984233-5984512 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 20, 44

Conread position: 114-370
Cow position: chr6:67782311-67782054 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 183
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 116, 36

Conread position: 114-373
Cow position: chr6:61436137-61436392 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 56

Conread position: 118-365
Cow position: chr6:37390204-37390445 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 35

Conread position: 124-372
Cow position: chr6:50481862-50481619 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 26

Conread position: 140-371
Cow position: chr6:14883339-14883559 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 93, 8

Conread position: 141-367
Cow position: chr6:15068745-15068962 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 88, 7

Conread position: 141-370
Cow position: chr6:7496895-7497113 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 88, 7

Conread position: 141-383
Cow position: chr6:50265888-50266129 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 95, 13

Conread position: 161-364
Cow position: chr6:26242377-26242584 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 35, 17

Conread position: 165-351
Cow position: chr6:23899877-23900068 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 145

Conread position: 167-338
Cow position: chr6:61542627-61542793 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 67, 117

Conread position: 167-374
Cow position: chr6:97906-98111 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 29, 107

Conread position: 168-372
Cow position: chr6:53233672-53233874 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 114

Conread position: 168-387
Cow position: chr6:56910005-56909780 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 60, 219

Conread position: 168-394
Cow position: chr6:50743190-50742968 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 97, 0

Conread position: 168-408
Cow position: chr6:42804200-42803961 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 60, 136

Conread position: 186-398
Cow position: chr6:11177241-11177027 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 55

Conread position: 387-835
Cow position: chr6:10703008-10702569 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 283
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 114, 140

Conread position: 391-789
Cow position: chr6:10687328-10686925 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 68

Conread position: 391-830
Cow position: chr6:29235768-29236210 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 35

Conread position: 391-830
Cow position: chr6:40020598-40020161 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 135

Conread position: 394-828
Cow position: chr6:13511321-13510884 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 287
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 114, 138

Conread position: 396-807
Cow position: chr6:17713567-17713167 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 244
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 289, 66

Conread position: 396-832
Cow position: chr6:30658278-30658690 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 292
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 10, 35

Conread position: 398-832
Cow position: chr6:57088278-57088701 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 277
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 287, 15

Conread position: 410-733
Cow position: chr6:59324829-59324512 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 215
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 114

Conread position: 411-832
Cow position: chr6:42368818-42369227 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 277
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 90, 10

Conread position: 414-617
Cow position: chr6:23088613-23088809 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 146, 24

Conread position: 415-835
Cow position: chr6:39622642-39622238 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 282
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 86, 5

Conread position: 420-835
Cow position: chr6:39635001-39634607 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 280
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 84, 18

Conread position: 428-776
Cow position: chr6:23202569-23202224 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 233
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 19, 101

Conread position: 428-828
Cow position: chr6:23250427-23250019 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 270
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 50, 22

Conread position: 428-831
Cow position: chr6:67068535-67068148 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 280
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 24, 93

Conread position: 428-832
Cow position: chr6:24647181-24647587 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 268
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 61, 54

Conread position: 428-832
Cow position: chr6:38229522-38229144 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 272
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 76, 90

Conread position: 428-832
Cow position: chr6:60350960-60351367 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 258
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 120, 93

Conread position: 430-804
Cow position: chr6:60273751-60273372 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 254
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 101, 124

Conread position: 433-835
Cow position: chr6:39656350-39655946 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 267
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 11, 79

Conread position: 439-835
Cow position: chr6:23440088-23439690 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 260
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 9, 135

Conread position: 440-836
Cow position: chr6:10358334-10357948 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 11, 54

Conread position: 443-729
Cow position: chr6:61059517-61059234 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 62, 79

Conread position: 445-702
Cow position: chr6:58382693-58382445 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 171
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 56, 70

Conread position: 447-831
Cow position: chr6:58721830-58722198 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 254
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 89, 68

Conread position: 447-835
Cow position: chr6:7276502-7276885 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 266
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 118, 54

Conread position: 459-831
Cow position: chr6:59359228-59358900 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 257
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 263, 74

Conread position: 469-835
Cow position: chr6:46885484-46885838 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 248
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 76, 161

Conread position: 482-832
Cow position: chr6:18108571-18108218 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 35

Conread position: 486-705
Cow position: chr6:4806159-4806378 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 152
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 100

Conread position: 492-832
Cow position: chr6:41616586-41616936 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 233
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 44, 214

Conread position: 504-813
Cow position: chr6:16083030-16082720 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 202
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 91

Conread position: 504-813
Cow position: chr6:16089685-16089995 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 202
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 91

Conread position: 506-830
Cow position: chr6:31179422-31179107 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 230
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 33, 83

Conread position: 513-835
Cow position: chr6:23842846-23842535 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 216
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 133, 29

Conread position: 526-831
Cow position: chr6:54244265-54243946 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 120

Conread position: 528-800
Cow position: chr6:11734951-11734676 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 197
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 17, 271

Conread position: 533-740
Cow position: chr6:67959180-67958971 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 35, 188

Conread position: 535-833
Cow position: chr6:35147567-35147861 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 201
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 31, 50

Conread position: 542-832
Cow position: chr6:20599341-20599043 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 12, 23

Conread position: 543-832
Cow position: chr6:19083048-19082765 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 26, 125

Conread position: 546-811
Cow position: chr6:69159793-69160052 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 23, 45

Conread position: 559-816
Cow position: chr6:31068636-31068888 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 32, 81

Conread position: 561-832
Cow position: chr6:32212003-32211734 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 120, 66

Conread position: 576-811
Cow position: chr6:59258259-59258024 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 148, 67

Conread position: 582-815
Cow position: chr6:18707241-18707464 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 136, 78

Conread position: 584-816
Cow position: chr6:60280109-60280339 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 116, 92

Conread position: 586-832
Cow position: chr6:69384680-69384445 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 19, 117

Conread position: 587-832
Cow position: chr6:33223443-33223687 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 162
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 59, 54

Conread position: 591-832
Cow position: chr6:58997439-58997679 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 142, 82

Conread position: 592-835
Cow position: chr6:24264234-24264485 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 51

Conread position: 609-832
Cow position: chr6:18018555-18018333 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 113, 69

Conread position: 609-835
Cow position: chr6:41094362-41094592 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 109, 0

Conread position: 614-814
Cow position: chr6:11370164-11370360 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 103, 127

Conread position: 657-824
Cow position: chr6:38371765-38371933 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 31, 18

Conread position: 667-835
Cow position: chr6:15056491-15056660 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 90

Conread position: 684-814
Cow position: chr6:42308855-42308722 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 62

Conread position: 685-817
Cow position: chr6:2129939-2130075 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 6, 0

Conread position: 690-808
Cow position: chr6:20195105-20194984 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 690-829
Cow position: chr6:56083197-56083057 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 24, 37

Conread position: 690-835
Cow position: chr6:56722450-56722598 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 0

Show alignments to all cow chromosomes.