Cow genome map

Conread name: Ss1.1-Pig4-TMW8039P19.5

Conread position: 2-401
Cow position: chr7:38469761-38470158 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 62

Conread position: 3-354
Cow position: chr7:25804619-25804970 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 251
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 226, 42

Conread position: 3-371
Cow position: chr7:38811205-38810854 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 264
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 8, 29

Conread position: 3-372
Cow position: chr7:40909896-40909521 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 29

Conread position: 3-372
Cow position: chr7:63334482-63334870 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 265
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 22, 122

Conread position: 3-373
Cow position: chr7:161720-161346 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 28

Conread position: 3-401
Cow position: chr7:50718288-50718690 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 55

Conread position: 3-402
Cow position: chr7:44186454-44186857 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 278
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 88, 55

Conread position: 4-374
Cow position: chr7:33597191-33596813 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 61

Conread position: 5-372
Cow position: chr7:66164841-66164489 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 247
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 19, 41

Conread position: 20-374
Cow position: chr7:38470271-38470626 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 38

Conread position: 32-393
Cow position: chr7:11157630-11157985 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 59, 33

Conread position: 71-320
Cow position: chr7:19929907-19930154 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 70, 20

Conread position: 100-373
Cow position: chr7:44617107-44617367 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 186
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 23, 11

Conread position: 107-355
Cow position: chr7:3916355-3916605 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 90, 22

Conread position: 107-388
Cow position: chr7:31108337-31108061 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 7, 42

Conread position: 109-387
Cow position: chr7:30544815-30544534 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 58

Conread position: 112-380
Cow position: chr7:12266077-12266351 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 33, 55

Conread position: 113-335
Cow position: chr7:47886668-47886439 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 182
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 36, 53

Conread position: 113-372
Cow position: chr7:40900151-40899896 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 20, 24

Conread position: 113-374
Cow position: chr7:25828698-25828959 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 36, 53

Conread position: 114-367
Cow position: chr7:55975145-55974902 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 38

Conread position: 114-426
Cow position: chr7:57380446-57380135 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 9, 38

Conread position: 141-372
Cow position: chr7:62014930-62014710 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 197, 7

Conread position: 148-401
Cow position: chr7:2753076-2753322 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 191
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 86, 17

Conread position: 165-363
Cow position: chr7:13801059-13800857 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 33, 176

Conread position: 167-383
Cow position: chr7:3662177-3661957 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 34, 143

Conread position: 167-383
Cow position: chr7:18107864-18107649 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 139

Conread position: 168-335
Cow position: chr7:37293382-37293216 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 21, 132

Conread position: 168-372
Cow position: chr7:5015055-5015254 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 66, 116

Conread position: 168-374
Cow position: chr7:50754762-50754551 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 61, 142

Conread position: 170-383
Cow position: chr7:936894-937109 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 13

Conread position: 178-403
Cow position: chr7:51756094-51755865 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 215

Conread position: 180-374
Cow position: chr7:16140050-16140251 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 161
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 18, 163

Conread position: 181-372
Cow position: chr7:21834456-21834267 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 102

Conread position: 181-374
Cow position: chr7:11650096-11650295 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 161

Conread position: 182-367
Cow position: chr7:49929416-49929609 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 16, 85

Conread position: 185-370
Cow position: chr7:7171419-7171607 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 195-364
Cow position: chr7:33509422-33509256 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 60, 22

Conread position: 216-374
Cow position: chr7:23958650-23958492 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 35, 15

Conread position: 390-675
Cow position: chr7:32904474-32904201 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 61, 29

Conread position: 390-788
Cow position: chr7:51198158-51197758 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 268
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 176, 34

Conread position: 391-832
Cow position: chr7:62112467-62112897 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 294
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 32, 134

Conread position: 391-832
Cow position: chr7:66062554-66062131 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 285
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 104, 21

Conread position: 412-823
Cow position: chr7:67520993-67521394 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 274
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 54, 15

Conread position: 412-832
Cow position: chr7:9046866-9046453 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 108

Conread position: 413-832
Cow position: chr7:13824948-13824545 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 290
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 53, 7

Conread position: 414-616
Cow position: chr7:22688520-22688729 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 111, 7

Conread position: 415-835
Cow position: chr7:39547781-39548190 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 282
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 86, 6

Conread position: 415-835
Cow position: chr7:52354801-52355209 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 266
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 96, 13

Conread position: 417-835
Cow position: chr7:24355641-24355220 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 283
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 12, 35

Conread position: 420-823
Cow position: chr7:255490-255089 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 274
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 72, 35

Conread position: 420-832
Cow position: chr7:46009556-46009965 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 61

Conread position: 422-616
Cow position: chr7:47908334-47908518 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 146, 39

Conread position: 422-699
Cow position: chr7:43860508-43860226 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 195
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 79, 40

Conread position: 428-756
Cow position: chr7:4503447-4503773 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 73, 121

Conread position: 428-828
Cow position: chr7:45136790-45136398 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 257
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 252, 80

Conread position: 430-776
Cow position: chr7:42110266-42110604 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 234
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 19, 42

Conread position: 430-832
Cow position: chr7:58305719-58305314 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 278
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 138, 68

Conread position: 430-835
Cow position: chr7:56851713-56851330 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 260
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 319, 90

Conread position: 433-832
Cow position: chr7:48278313-48277911 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 274
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 11, 121

Conread position: 438-832
Cow position: chr7:61717052-61717441 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 268
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 92

Conread position: 439-703
Cow position: chr7:15262753-15263013 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 120, 135

Conread position: 439-710
Cow position: chr7:12969338-12969074 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 179
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 122, 11

Conread position: 440-678
Cow position: chr7:1049527-1049771 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 38

Conread position: 442-835
Cow position: chr7:38902328-38902715 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 268
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 59, 78

Conread position: 446-832
Cow position: chr7:40464309-40464685 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 269
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 126, 74

Conread position: 447-832
Cow position: chr7:1802312-1801943 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 265
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 27, 42

Conread position: 454-823
Cow position: chr7:43995629-43995274 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 238
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 270, 8

Conread position: 468-835
Cow position: chr7:61165305-61164935 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 248
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 68, 33

Conread position: 469-812
Cow position: chr7:68790380-68790722 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 238
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 60, 163

Conread position: 482-832
Cow position: chr7:63287747-63287396 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 240
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 47, 239

Conread position: 485-638
Cow position: chr7:16092479-16092324 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 19

Conread position: 506-832
Cow position: chr7:34771285-34770962 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 229
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 33, 50

Conread position: 507-833
Cow position: chr7:48329668-48329989 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 139

Conread position: 535-709
Cow position: chr7:32826055-32825882 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 31, 65

Conread position: 536-832
Cow position: chr7:28317857-28318159 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 31, 130

Conread position: 546-816
Cow position: chr7:38486970-38486701 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 20, 8

Conread position: 571-832
Cow position: chr7:2083211-2083466 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 173
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 233, 25

Conread position: 577-831
Cow position: chr7:1387080-1386826 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 172
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 141, 27

Conread position: 578-813
Cow position: chr7:53550198-53549962 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 33, 62

Conread position: 589-835
Cow position: chr7:32960556-32960790 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 169
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 122, 0

Conread position: 590-834
Cow position: chr7:35414620-35414865 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 97, 45

Conread position: 592-832
Cow position: chr7:6190300-6190548 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 168
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 183

Conread position: 592-835
Cow position: chr7:33784292-33784048 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 44, 97

Conread position: 593-832
Cow position: chr7:39945565-39945800 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 94, 41

Conread position: 611-812
Cow position: chr7:14261811-14262014 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 73, 134

Conread position: 613-832
Cow position: chr7:7585749-7585528 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 71, 63

Conread position: 613-832
Cow position: chr7:44010958-44010739 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 72, 86

Conread position: 648-813
Cow position: chr7:6245761-6245595 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 123, 0

Conread position: 675-832
Cow position: chr7:28836429-28836588 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 71

Conread position: 685-813
Cow position: chr7:26401102-26401228 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 690-831
Cow position: chr7:7625230-7625087 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 55

Conread position: 690-832
Cow position: chr7:42473444-42473587 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 21, 56

Show alignments to all cow chromosomes.