Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-401 |
| Cow position: | chr8:23704349-23704747 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 89, 61 |
| Conread position: | 3-406 |
| Cow position: | chr8:3551998-3552395 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 23 |
| Conread position: | 10-357 |
| Cow position: | chr8:46751049-46751389 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 55 |
| Conread position: | 23-396 |
| Cow position: | chr8:47801896-47802266 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 42 |
| Conread position: | 59-401 |
| Cow position: | chr8:1365807-1365465 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 247 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 97-368 |
| Cow position: | chr8:33777264-33777536 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 113-363 |
| Cow position: | chr8:25585145-25584905 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 113-364 |
| Cow position: | chr8:29240535-29240787 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 113-366 |
| Cow position: | chr8:1103103-1102853 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 113-372 |
| Cow position: | chr8:61168918-61168654 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 113-374 |
| Cow position: | chr8:12524741-12525002 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 114-372 |
| Cow position: | chr8:39880827-39880584 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 117-374 |
| Cow position: | chr8:9076993-9076739 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 132-373 |
| Cow position: | chr8:36295269-36295028 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 140-372 |
| Cow position: | chr8:5959213-5959433 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 141-372 |
| Cow position: | chr8:5650103-5650318 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 141-372 |
| Cow position: | chr8:21896685-21896900 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 141-372 |
| Cow position: | chr8:30549423-30549642 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 141-372 |
| Cow position: | chr8:48707532-48707753 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 86, 9 |
| Conread position: | 141-372 |
| Cow position: | chr8:58150386-58150615 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 88, 7 |
| Conread position: | 141-374 |
| Cow position: | chr8:45966120-45966358 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 144-332 |
| Cow position: | chr8:12576685-12576870 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 21 |
| Conread position: | 147-372 |
| Cow position: | chr8:21978106-21977890 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 80, 18 |
| Conread position: | 147-372 |
| Cow position: | chr8:21986465-21986252 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 81, 18 |
| Conread position: | 148-372 |
| Cow position: | chr8:18951145-18950929 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 148-372 |
| Cow position: | chr8:39940239-39940456 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 150-374 |
| Cow position: | chr8:26079771-26079549 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 154-374 |
| Cow position: | chr8:10097533-10097312 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 164-383 |
| Cow position: | chr8:7419167-7418943 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 166-323 |
| Cow position: | chr8:12515646-12515804 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 146, 138 |
| Conread position: | 167-373 |
| Cow position: | chr8:45343914-45344129 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 179 |
| Conread position: | 167-374 |
| Cow position: | chr8:52145810-52145596 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 176 |
| Conread position: | 168-373 |
| Cow position: | chr8:40113800-40113593 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 65, 107 |
| Conread position: | 178-355 |
| Cow position: | chr8:37094398-37094580 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 178-374 |
| Cow position: | chr8:24566322-24566116 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 23, 168 |
| Conread position: | 190-382 |
| Cow position: | chr8:9519058-9519255 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 7, 151 |
| Conread position: | 203-383 |
| Cow position: | chr8:26828933-26828750 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 151 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 27, 106 |
| Conread position: | 409-716 |
| Cow position: | chr8:48163299-48162996 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 92, 18 |
| Conread position: | 410-776 |
| Cow position: | chr8:42555634-42555996 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 155, 18 |
| Conread position: | 413-832 |
| Cow position: | chr8:47710586-47710173 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 152, 20 |
| Conread position: | 415-833 |
| Cow position: | chr8:44102446-44102857 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 103 |
| Conread position: | 416-835 |
| Cow position: | chr8:12086021-12085629 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 101 |
| Conread position: | 420-796 |
| Cow position: | chr8:51508350-51507973 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 10, 101 |
| Conread position: | 420-832 |
| Cow position: | chr8:24111846-24112245 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 422-814 |
| Cow position: | chr8:53463704-53464082 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 422-829 |
| Cow position: | chr8:17413036-17413444 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 144, 96 |
| Conread position: | 427-832 |
| Cow position: | chr8:37872092-37871692 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 208, 91 |
| Conread position: | 428-807 |
| Cow position: | chr8:23054134-23053761 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 428-832 |
| Cow position: | chr8:35315871-35315460 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 277 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 139, 94 |
| Conread position: | 439-831 |
| Cow position: | chr8:56531564-56531933 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 130, 57 |
| Conread position: | 439-835 |
| Cow position: | chr8:8191059-8191428 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 246, 59 |
| Conread position: | 447-822 |
| Cow position: | chr8:21560702-21561073 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 97, 129 |
| Conread position: | 456-807 |
| Cow position: | chr8:32741210-32740868 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 468-832 |
| Cow position: | chr8:13642601-13642953 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 468-835 |
| Cow position: | chr8:21920790-21921153 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 510-824 |
| Cow position: | chr8:26883505-26883199 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 19, 128 |
| Conread position: | 533-831 |
| Cow position: | chr8:15971836-15971543 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 535-828 |
| Cow position: | chr8:36650491-36650782 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 543-831 |
| Cow position: | chr8:21694389-21694680 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 560-811 |
| Cow position: | chr8:24782559-24782815 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 102 |
| Conread position: | 565-831 |
| Cow position: | chr8:23013286-23013552 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 34 |
| Conread position: | 582-812 |
| Cow position: | chr8:21180123-21179898 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 103, 48 |
| Conread position: | 582-816 |
| Cow position: | chr8:5984490-5984255 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 102 |
| Conread position: | 583-816 |
| Cow position: | chr8:36719077-36719308 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 591-830 |
| Cow position: | chr8:50416070-50416309 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 612-816 |
| Cow position: | chr8:58626935-58627138 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 631-816 |
| Cow position: | chr8:25470432-25470616 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 689-832 |
| Cow position: | chr8:33210617-33210472 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 690-832 |
| Cow position: | chr8:21494784-21494928 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 691-835 |
| Cow position: | chr8:35462362-35462509 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 723-835 |
| Cow position: | chr8:30120501-30120388 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.