Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-282 |
| Cow position: | chr9:23133704-23133430 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 3-362 |
| Cow position: | chr9:16619307-16618955 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 61 |
| Conread position: | 3-364 |
| Cow position: | chr9:25541287-25541643 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 82, 62 |
| Conread position: | 3-370 |
| Cow position: | chr9:1387612-1387977 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 61 |
| Conread position: | 3-372 |
| Cow position: | chr9:5380800-5381157 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 89, 20 |
| Conread position: | 3-372 |
| Cow position: | chr9:6260160-6260536 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 3-372 |
| Cow position: | chr9:12638013-12638371 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 20 |
| Conread position: | 3-374 |
| Cow position: | chr9:27385518-27385893 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 63 |
| Conread position: | 3-401 |
| Cow position: | chr9:41026753-41027134 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 20, 99 |
| Conread position: | 5-344 |
| Cow position: | chr9:40441080-40440743 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 53 |
| Conread position: | 7-387 |
| Cow position: | chr9:16863954-16863577 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 51-371 |
| Cow position: | chr9:8321378-8321065 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 82, 13 |
| Conread position: | 52-313 |
| Cow position: | chr9:5479330-5479594 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 64-383 |
| Cow position: | chr9:44114789-44114478 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 66-372 |
| Cow position: | chr9:1631278-1630974 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 99-374 |
| Cow position: | chr9:37289666-37289949 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 68 |
| Conread position: | 113-355 |
| Cow position: | chr9:7615817-7616059 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 113-356 |
| Cow position: | chr9:34047689-34047937 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 15, 55 |
| Conread position: | 113-373 |
| Cow position: | chr9:1383526-1383267 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 113-383 |
| Cow position: | chr9:58569586-58569320 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 114-372 |
| Cow position: | chr9:4968519-4968268 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 114-372 |
| Cow position: | chr9:20605556-20605310 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 115-387 |
| Cow position: | chr9:8627448-8627174 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 139-373 |
| Cow position: | chr9:15993194-15993433 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 140-367 |
| Cow position: | chr9:8596443-8596660 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 8 |
| Conread position: | 148-400 |
| Cow position: | chr9:22441161-22440915 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 167-373 |
| Cow position: | chr9:33569579-33569364 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 31, 179 |
| Conread position: | 167-374 |
| Cow position: | chr9:7448258-7448043 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 177 |
| Conread position: | 168-372 |
| Cow position: | chr9:49420920-49421122 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 113 |
| Conread position: | 180-303 |
| Cow position: | chr9:30200131-30200006 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 181-390 |
| Cow position: | chr9:36712675-36712890 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 182-355 |
| Cow position: | chr9:22726346-22726522 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 48, 98 |
| Conread position: | 182-355 |
| Cow position: | chr9:54462434-54462255 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 184-383 |
| Cow position: | chr9:3436111-3435908 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 258-390 |
| Cow position: | chr9:36602512-36602380 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-837 |
| Cow position: | chr9:32685817-32686264 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 32 |
| Conread position: | 414-833 |
| Cow position: | chr9:7310301-7310710 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 108, 86 |
| Conread position: | 415-835 |
| Cow position: | chr9:50163865-50163442 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 14 |
| Conread position: | 416-831 |
| Cow position: | chr9:41501798-41502226 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 417-709 |
| Cow position: | chr9:37225268-37225557 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 175 |
| Conread position: | 420-832 |
| Cow position: | chr9:34501756-34501344 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 15 |
| Conread position: | 421-815 |
| Cow position: | chr9:8148120-8147734 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 157, 29 |
| Conread position: | 422-616 |
| Cow position: | chr9:40957121-40956922 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 64 |
| Conread position: | 422-673 |
| Cow position: | chr9:46956074-46956319 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 89, 112 |
| Conread position: | 424-832 |
| Cow position: | chr9:4825709-4825319 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 282 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 261, 60 |
| Conread position: | 428-803 |
| Cow position: | chr9:55171609-55171990 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 85 |
| Conread position: | 428-831 |
| Cow position: | chr9:53551886-53551495 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 76, 54 |
| Conread position: | 428-832 |
| Cow position: | chr9:11828943-11829331 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 139, 120 |
| Conread position: | 430-812 |
| Cow position: | chr9:9446519-9446899 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 73, 145 |
| Conread position: | 430-832 |
| Cow position: | chr9:52677136-52676740 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 68 |
| Conread position: | 439-636 |
| Cow position: | chr9:41285525-41285334 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 439-832 |
| Cow position: | chr9:28411875-28411485 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 442-823 |
| Cow position: | chr9:15032987-15032622 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 445-835 |
| Cow position: | chr9:35724512-35724893 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 6, 67 |
| Conread position: | 446-832 |
| Cow position: | chr9:19747702-19747313 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 447-832 |
| Cow position: | chr9:56245880-56245504 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 92, 64 |
| Conread position: | 449-816 |
| Cow position: | chr9:62686276-62685910 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 90, 84 |
| Conread position: | 450-709 |
| Cow position: | chr9:36689923-36689666 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 106, 51 |
| Conread position: | 467-842 |
| Cow position: | chr9:45201013-45200629 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 81 |
| Conread position: | 467-844 |
| Cow position: | chr9:13695509-13695881 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 468-832 |
| Cow position: | chr9:20721013-20721378 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 490-831 |
| Cow position: | chr9:45165545-45165214 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 507-832 |
| Cow position: | chr9:19672554-19672231 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 92, 41 |
| Conread position: | 537-827 |
| Cow position: | chr9:53065498-53065791 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 109, 104 |
| Conread position: | 538-835 |
| Cow position: | chr9:46221451-46221750 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 34, 97 |
| Conread position: | 560-832 |
| Cow position: | chr9:25221830-25222100 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 564-734 |
| Cow position: | chr9:42714576-42714746 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 121, 26 |
| Conread position: | 576-832 |
| Cow position: | chr9:7683548-7683804 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 111, 17 |
| Conread position: | 580-811 |
| Cow position: | chr9:47726301-47726529 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 594-835 |
| Cow position: | chr9:46153584-46153821 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 112, 84 |
| Conread position: | 596-832 |
| Cow position: | chr9:49132324-49132084 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 91, 120 |
| Conread position: | 648-835 |
| Cow position: | chr9:30865296-30865109 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 690-813 |
| Cow position: | chr9:44498304-44498179 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 695-835 |
| Cow position: | chr9:48762610-48762752 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.