Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039P19.5 |
| Conread position: | 3-372 |
| Cow position: | chrX:28641515-28641873 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 26, 117 |
| Conread position: | 5-388 |
| Cow position: | chrX:36090310-36090702 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 60 |
| Conread position: | 7-370 |
| Cow position: | chrX:48016205-48015841 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 13-369 |
| Cow position: | chrX:47331835-47331475 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 254 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 16-395 |
| Cow position: | chrX:45769836-45769449 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 75, 43 |
| Conread position: | 23-388 |
| Cow position: | chrX:48265256-48264895 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 127, 35 |
| Conread position: | 91-372 |
| Cow position: | chrX:47336346-47336063 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 58, 76 |
| Conread position: | 113-271 |
| Cow position: | chrX:6393175-6393019 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 113-373 |
| Cow position: | chrX:34827258-34827514 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 113-373 |
| Cow position: | chrX:37075039-37074784 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 113-373 |
| Cow position: | chrX:39528431-39528689 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 118, 21 |
| Conread position: | 113-374 |
| Cow position: | chrX:25306762-25306501 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 113-374 |
| Cow position: | chrX:32978930-32978664 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 113-390 |
| Cow position: | chrX:19503362-19503636 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 114-372 |
| Cow position: | chrX:42496851-42497102 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 124-372 |
| Cow position: | chrX:39861018-39861262 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 124-372 |
| Cow position: | chrX:45892980-45893229 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 26, 43 |
| Conread position: | 133-363 |
| Cow position: | chrX:44117270-44117040 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 134-321 |
| Cow position: | chrX:15267310-15267121 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 141-372 |
| Cow position: | chrX:26381541-26381324 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 195, 7 |
| Conread position: | 144-374 |
| Cow position: | chrX:12649112-12649346 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 148-372 |
| Cow position: | chrX:42416903-42417118 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 17 |
| Conread position: | 148-372 |
| Cow position: | chrX:42570651-42570435 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 148-374 |
| Cow position: | chrX:29919839-29919610 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 158-373 |
| Cow position: | chrX:30035991-30035768 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 166-373 |
| Cow position: | chrX:26463669-26463883 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 167-359 |
| Cow position: | chrX:31859284-31859490 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 184 |
| Conread position: | 167-367 |
| Cow position: | chrX:26411695-26411903 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 34, 131 |
| Conread position: | 168-333 |
| Cow position: | chrX:42467419-42467250 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 168-335 |
| Cow position: | chrX:17791206-17791035 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 113 |
| Conread position: | 169-372 |
| Cow position: | chrX:39983690-39983888 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 115 |
| Conread position: | 178-374 |
| Cow position: | chrX:29149726-29149522 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 23, 166 |
| Conread position: | 178-374 |
| Cow position: | chrX:40598619-40598824 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 23, 167 |
| Conread position: | 181-372 |
| Cow position: | chrX:48401412-48401219 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 74, 90 |
| Conread position: | 181-374 |
| Cow position: | chrX:9515097-9514895 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 15, 164 |
| Conread position: | 184-383 |
| Cow position: | chrX:38630631-38630439 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 46, 98 |
| Conread position: | 186-373 |
| Cow position: | chrX:28698274-28698083 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 398-741 |
| Cow position: | chrX:32770043-32769700 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 193 |
| Conread position: | 413-613 |
| Cow position: | chrX:11045460-11045258 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 154, 36 |
| Conread position: | 413-832 |
| Cow position: | chrX:35818020-35818416 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 108 |
| Conread position: | 414-806 |
| Cow position: | chrX:11193733-11194130 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 6 |
| Conread position: | 415-832 |
| Cow position: | chrX:25422899-25422495 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 111 |
| Conread position: | 428-661 |
| Cow position: | chrX:17028713-17028936 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 428-830 |
| Cow position: | chrX:37499564-37499959 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 257, 147 |
| Conread position: | 430-811 |
| Cow position: | chrX:38847055-38846674 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 81, 224 |
| Conread position: | 440-831 |
| Cow position: | chrX:27707913-27708302 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 273 |
| Conread position: | 447-833 |
| Cow position: | chrX:38168465-38168827 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 54, 109 |
| Conread position: | 456-832 |
| Cow position: | chrX:26609328-26609719 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 47, 93 |
| Conread position: | 458-802 |
| Cow position: | chrX:38363406-38363743 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 458-835 |
| Cow position: | chrX:11030778-11031155 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 131 |
| Conread position: | 459-822 |
| Cow position: | chrX:36881499-36881869 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 113, 88 |
| Conread position: | 459-826 |
| Cow position: | chrX:4334506-4334136 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 46, 89 |
| Conread position: | 467-832 |
| Cow position: | chrX:4295844-4295480 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 100, 82 |
| Conread position: | 489-835 |
| Cow position: | chrX:37124213-37123869 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 546-823 |
| Cow position: | chrX:11837488-11837765 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 91 |
| Conread position: | 549-832 |
| Cow position: | chrX:30804665-30804383 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 138, 37 |
| Conread position: | 558-832 |
| Cow position: | chrX:32052448-32052165 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 7, 146 |
| Conread position: | 561-834 |
| Cow position: | chrX:37793941-37794212 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 150, 20 |
| Conread position: | 591-835 |
| Cow position: | chrX:340857-341097 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 123, 74 |
| Conread position: | 601-831 |
| Cow position: | chrX:26003325-26003103 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 657-832 |
| Cow position: | chrX:6471480-6471304 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 677-835 |
| Cow position: | chrX:2724209-2724050 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 690-816 |
| Cow position: | chrX:13531651-13531778 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 690-831 |
| Cow position: | chrX:8403836-8403973 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 692-832 |
| Cow position: | chrX:14160366-14160223 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.