Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8040N02.3
        

               Conread position:
               122-477
               

               Cow position:
               chr5:63565974-63566344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               45, 26
               

               Conread position:
               157-581
               

               Cow position:
               chr5:34528267-34528688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 50
               

               Conread position:
               158-473
               

               Cow position:
               chr5:20344873-20345192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               222
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               9, 54
               

               Conread position:
               158-524
               

               Cow position:
               chr5:47313177-47313558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               9, 72
               

               Conread position:
               158-555
               

               Cow position:
               chr5:31480857-31481264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               277
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               9, 72
               

               Conread position:
               158-578
               

               Cow position:
               chr5:46611380-46610959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               280
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               9, 53
               

               Conread position:
               158-587
               

               Cow position:
               chr5:44797011-44796585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 47
               

               Conread position:
               158-590
               

               Cow position:
               chr5:18573874-18574325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 61
               

               Conread position:
               158-590
               

               Cow position:
               chr5:45226125-45225665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 62
               

               Conread position:
               158-590
               

               Cow position:
               chr5:63647763-63647328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               292
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               13, 61
               

               Conread position:
               158-591
               

               Cow position:
               chr5:17087326-17086870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               314
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               13, 61
               

               Conread position:
               158-620
               

               Cow position:
               chr5:58855806-58856284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 21
               

               Conread position:
               159-494
               

               Cow position:
               chr5:10261537-10261181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               14, 60
               

               Conread position:
               160-591
               

               Cow position:
               chr5:20779681-20779245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 49
               

               Conread position:
               161-588
               

               Cow position:
               chr5:63987738-63987298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 67
               

               Conread position:
               164-433
               

               Cow position:
               chr5:60519886-60520151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               13, 42
               

               Conread position:
               164-444
               

               Cow position:
               chr5:34288756-34288471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               13, 49
               

               Conread position:
               164-458
               

               Cow position:
               chr5:31020403-31020125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               217
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               12, 54
               

               Conread position:
               164-499
               

               Cow position:
               chr5:51357791-51357449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               13, 59
               

               Conread position:
               164-540
               

               Cow position:
               chr5:45705758-45706135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               7, 54
               

               Conread position:
               164-570
               

               Cow position:
               chr5:29903811-29903392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               291
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               13, 58
               

               Conread position:
               164-570
               

               Cow position:
               chr5:53835405-53835847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               311
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               13, 90
               

               Conread position:
               164-575
               

               Cow position:
               chr5:65933215-65932807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 45
               

               Conread position:
               164-581
               

               Cow position:
               chr5:14314234-14314671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 65
               

               Conread position:
               164-590
               

               Cow position:
               chr5:3582290-3582710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               294
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               13, 84
               

               Conread position:
               164-590
               

               Cow position:
               chr5:58519688-58519265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 47
               

               Conread position:
               164-591
               

               Cow position:
               chr5:9894413-9893972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               309
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               73, 16
               

               Conread position:
               164-591
               

               Cow position:
               chr5:45845982-45845536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 59
               

               Conread position:
               164-591
               

               Cow position:
               chr5:47601522-47601964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 59
               

               Conread position:
               164-591
               

               Cow position:
               chr5:65941541-65941099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 46
               

               Conread position:
               164-592
               

               Cow position:
               chr5:26377953-26377515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 49
               

               Conread position:
               164-642
               

               Cow position:
               chr5:41546179-41545686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               343
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               13, 48
               

               Conread position:
               166-341
               

               Cow position:
               chr5:63235188-63235007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               11, 57
               

               Conread position:
               166-396
               

               Cow position:
               chr5:69099239-69099482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               11, 68
               

               Conread position:
               166-500
               

               Cow position:
               chr5:62827042-62826694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               252
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               11, 57
               

               Conread position:
               166-505
               

               Cow position:
               chr5:21963992-21964352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 95
               

               Conread position:
               167-557
               

               Cow position:
               chr5:20407948-20407560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               270
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               12, 42
               

               Conread position:
               167-588
               

               Cow position:
               chr5:39936818-39937264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 44
               

               Conread position:
               167-592
               

               Cow position:
               chr5:25231296-25230864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               300
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               8, 36
               

               Conread position:
               167-619
               

               Cow position:
               chr5:46510153-46509688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               315
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               9, 50
               

               Conread position:
               169-570
               

               Cow position:
               chr5:44848294-44847890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 48
               

               Conread position:
               170-382
               

               Cow position:
               chr5:53825243-53825449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               184, 46
               

               Conread position:
               170-461
               

               Cow position:
               chr5:42747880-42748176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               87, 37
               

               Conread position:
               170-473
               

               Cow position:
               chr5:6086844-6086530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 51
               

               Conread position:
               170-473
               

               Cow position:
               chr5:19470464-19470160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               141, 39
               

               Conread position:
               170-479
               

               Cow position:
               chr5:7921664-7921367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               9, 43
               

               Conread position:
               170-538
               

               Cow position:
               chr5:61576258-61576644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               267
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               67, 46
               

               Conread position:
               170-569
               

               Cow position:
               chr5:15598515-15598108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 57
               

               Conread position:
               170-575
               

               Cow position:
               chr5:6528398-6528821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 47
               

               Conread position:
               170-587
               

               Cow position:
               chr5:22565356-22565767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               58, 222
               

               Conread position:
               170-588
               

               Cow position:
               chr5:53055835-53055412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               280
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               9, 47
               

               Conread position:
               170-590
               

               Cow position:
               chr5:26094452-26094015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 48
               

               Conread position:
               170-590
               

               Cow position:
               chr5:47871332-47870902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               307
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               9, 52
               

               Conread position:
               170-590
               

               Cow position:
               chr5:61725689-61726112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               299
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               87, 50
               

               Conread position:
               170-591
               

               Cow position:
               chr5:43858710-43858268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 40
               

               Conread position:
               170-650
               

               Cow position:
               chr5:54311041-54311545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 114
               

               Conread position:
               171-465
               

               Cow position:
               chr5:694301-694597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               218
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               40, 33
               

               Conread position:
               171-468
               

               Cow position:
               chr5:72149971-72150275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               231
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               78, 40
               

               Conread position:
               171-490
               

               Cow position:
               chr5:26790724-26790407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               146, 33
               

               Conread position:
               171-540
               

               Cow position:
               chr5:3242745-3242380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               259
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               133, 45
               

               Conread position:
               171-569
               

               Cow position:
               chr5:31097085-31096672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               274
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               79, 37
               

               Conread position:
               171-577
               

               Cow position:
               chr5:6045006-6045434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 56
               

               Conread position:
               171-579
               

               Cow position:
               chr5:50533661-50533248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 40
               

               Conread position:
               171-580
               

               Cow position:
               chr5:50483142-50482719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               294
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               82, 39
               

               Conread position:
               171-587
               

               Cow position:
               chr5:12149266-12149693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               298
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               84, 45
               

               Conread position:
               171-588
               

               Cow position:
               chr5:29827773-29828193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 45
               

               Conread position:
               171-592
               

               Cow position:
               chr5:55176612-55177040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 39
               

               Conread position:
               171-630
               

               Cow position:
               chr5:53842004-53842485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               320
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               27, 12
               

               Conread position:
               171-650
               

               Cow position:
               chr5:23647287-23646811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               316
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               147, 42
               

               Conread position:
               173-623
               

               Cow position:
               chr5:26477279-26476837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 32
               

               Conread position:
               174-450
               

               Cow position:
               chr5:49479053-49479337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               35, 143
               

               Conread position:
               174-476
               

               Cow position:
               chr5:14420622-14420307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               223
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               135, 54
               

               Conread position:
               174-500
               

               Cow position:
               chr5:41531367-41531027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               23, 55
               

               Conread position:
               174-585
               

               Cow position:
               chr5:27419998-27419583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               283
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               144, 53
               

               Conread position:
               174-591
               

               Cow position:
               chr5:55068444-55068858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 42
               

               Conread position:
               175-417
               

               Cow position:
               chr5:12672298-12672057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               131, 41
               

               Conread position:
               175-492
               

               Cow position:
               chr5:47888991-47888665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               235
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               83, 41
               

               Conread position:
               175-494
               

               Cow position:
               chr5:17631149-17630826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               77, 52
               

               Conread position:
               175-533
               

               Cow position:
               chr5:16508820-16509200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               277
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               79, 45
               

               Conread position:
               175-538
               

               Cow position:
               chr5:4507237-4506866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               74, 45
               

               Conread position:
               175-566
               

               Cow position:
               chr5:56467428-56467817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 34
               

               Conread position:
               175-570
               

               Cow position:
               chr5:30302622-30303022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               271
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               87, 35
               

               Conread position:
               175-577
               

               Cow position:
               chr5:62172130-62172549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 38
               

               Conread position:
               175-578
               

               Cow position:
               chr5:360221-359800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               288
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               125, 50
               

               Conread position:
               175-578
               

               Cow position:
               chr5:26376292-26376683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               78, 41
               

               Conread position:
               175-590
               

               Cow position:
               chr5:2309856-2309407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 29
               

               Conread position:
               175-590
               

               Cow position:
               chr5:4032283-4031835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 172
               

               Conread position:
               175-591
               

               Cow position:
               chr5:66366258-66366667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               297
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               79, 27
               

               Conread position:
               175-593
               

               Cow position:
               chr5:47317244-47316820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 41
               

               Conread position:
               176-581
               

               Cow position:
               chr5:72564483-72564906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 32
               

               Conread position:
               177-370
               

               Cow position:
               chr5:60947944-60948143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               61, 33
               

               Conread position:
               177-395
               

               Cow position:
               chr5:33347991-33348203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               60, 27
               

               Conread position:
               177-413
               

               Cow position:
               chr5:63917681-63917441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               141, 34
               

               Conread position:
               177-419
               

               Cow position:
               chr5:19969306-19969057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               77, 33
               

               Conread position:
               177-424
               

               Cow position:
               chr5:40058303-40058535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               77, 33
               

               Conread position:
               177-439
               

               Cow position:
               chr5:29504831-29505104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               47, 34
               

               Conread position:
               177-443
               

               Cow position:
               chr5:30816441-30816719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               60, 39
               

               Conread position:
               177-449
               

               Cow position:
               chr5:27690337-27690054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               32, 73
               

               Conread position:
               177-463
               

               Cow position:
               chr5:64844391-64844099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               77, 32
               

               Conread position:
               177-465
               

               Cow position:
               chr5:20974720-20974423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               60, 44
               

               Conread position:
               177-467
               

               Cow position:
               chr5:49820868-49821164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               122, 55
               

               Conread position:
               177-468
               

               Cow position:
               chr5:50950279-50950579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               76, 33
               

               Conread position:
               177-473
               

               Cow position:
               chr5:34915868-34916161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               132, 50
               

               Conread position:
               177-477
               

               Cow position:
               chr5:23856437-23856127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               72, 33
               

               Conread position:
               177-479
               

               Cow position:
               chr5:59298233-59297925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               227
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               72, 33
               

               Conread position:
               177-488
               

               Cow position:
               chr5:59443525-59443204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               241
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               81, 39
               

               Conread position:
               177-492
               

               Cow position:
               chr5:42667666-42667337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               77, 44
               

               Conread position:
               177-493
               

               Cow position:
               chr5:54126806-54127124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               76, 31
               

               Conread position:
               177-496
               

               Cow position:
               chr5:27015418-27015734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               221
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               85, 43
               

               Conread position:
               177-501
               

               Cow position:
               chr5:54405168-54404831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               80, 38
               

               Conread position:
               177-505
               

               Cow position:
               chr5:65593603-65593935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               77, 31
               

               Conread position:
               177-509
               

               Cow position:
               chr5:9430748-9430399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               34, 185
               

               Conread position:
               177-526
               

               Cow position:
               chr5:41951355-41951009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               134, 26
               

               Conread position:
               177-534
               

               Cow position:
               chr5:33081064-33080697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               60, 32
               

               Conread position:
               177-536
               

               Cow position:
               chr5:5938050-5938419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               264
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               127, 50
               

               Conread position:
               177-536
               

               Cow position:
               chr5:66815855-66815475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               81, 44
               

               Conread position:
               177-538
               

               Cow position:
               chr5:34506200-34505827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               272
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               71, 33
               

               Conread position:
               177-540
               

               Cow position:
               chr5:28330603-28330242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               254
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               132, 20
               

               Conread position:
               177-540
               

               Cow position:
               chr5:32153590-32153218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               268
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               141, 39
               

               Conread position:
               177-540
               

               Cow position:
               chr5:39094279-39094651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               60, 39
               

               Conread position:
               177-547
               

               Cow position:
               chr5:31469857-31469485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               267
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               60, 26
               

               Conread position:
               177-553
               

               Cow position:
               chr5:61839914-61840303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               279
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               84, 33
               

               Conread position:
               177-557
               

               Cow position:
               chr5:52645354-52644962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 32
               

               Conread position:
               177-560
               

               Cow position:
               chr5:24175097-24175496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               275
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               35, 57
               

               Conread position:
               177-562
               

               Cow position:
               chr5:41129480-41129865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               283
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               29, 17
               

               Conread position:
               177-566
               

               Cow position:
               chr5:63964455-63964038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               292
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               32, 246
               

               Conread position:
               177-569
               

               Cow position:
               chr5:28927871-28927464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 49
               

               Conread position:
               177-575
               

               Cow position:
               chr5:4218607-4218993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 31
               

               Conread position:
               177-576
               

               Cow position:
               chr5:12352056-12351672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               264
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               60, 41
               

               Conread position:
               177-577
               

               Cow position:
               chr5:21617181-21617596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               287
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               117, 50
               

               Conread position:
               177-577
               

               Cow position:
               chr5:34442067-34441642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 37
               

               Conread position:
               177-578
               

               Cow position:
               chr5:27103066-27102655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               277
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               45, 12
               

               Conread position:
               177-578
               

               Cow position:
               chr5:27615228-27615651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               292
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               40, 218
               

               Conread position:
               177-579
               

               Cow position:
               chr5:35826319-35826741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               285
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               34, 27
               

               Conread position:
               177-581
               

               Cow position:
               chr5:37942067-37941665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               285
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               79, 32
               

               Conread position:
               177-588
               

               Cow position:
               chr5:28224181-28224601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 39
               

               Conread position:
               177-588
               

               Cow position:
               chr5:74643935-74643529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 28
               

               Conread position:
               177-589
               

               Cow position:
               chr5:15478834-15479275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 55
               

               Conread position:
               177-589
               

               Cow position:
               chr5:34887472-34887045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               302
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               81, 38
               

               Conread position:
               177-590
               

               Cow position:
               chr5:26097023-26097439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 31
               

               Conread position:
               177-590
               

               Cow position:
               chr5:30276421-30276841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 33
               

               Conread position:
               177-590
               

               Cow position:
               chr5:37645791-37646232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               303
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               34, 45
               

               Conread position:
               177-590
               

               Cow position:
               chr5:50599792-50600199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               288
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               128, 43
               

               Conread position:
               177-590
               

               Cow position:
               chr5:64524153-64523711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               81, 27
               

               Conread position:
               177-590
               

               Cow position:
               chr5:65752585-65753012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               301
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               77, 33
               

               Conread position:
               177-591
               

               Cow position:
               chr5:16206416-16206003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 33
               

               Conread position:
               177-591
               

               Cow position:
               chr5:26467348-26467780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               290
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               132, 50
               

               Conread position:
               177-591
               

               Cow position:
               chr5:35145076-35145478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 43
               

               Conread position:
               177-591
               

               Cow position:
               chr5:44752586-44752155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 44
               

               Conread position:
               177-591
               

               Cow position:
               chr5:60715629-60715216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 12
               

               Conread position:
               177-591
               

               Cow position:
               chr5:72045915-72045525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 33
               

               Conread position:
               177-592
               

               Cow position:
               chr5:37190367-37189944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               81, 27
               

               Conread position:
               177-593
               

               Cow position:
               chr5:43923423-43923007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               297
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               141, 50
               

               Conread position:
               177-594
               

               Cow position:
               chr5:44054309-44053899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               304
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               127, 34
               

               Conread position:
               177-606
               

               Cow position:
               chr5:39447809-39447365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 60
               

               Conread position:
               177-608
               

               Cow position:
               chr5:68604579-68605023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               302
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               80, 44
               

               Conread position:
               177-609
               

               Cow position:
               chr5:59303542-59303111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               293
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               77, 39
               

               Conread position:
               177-614
               

               Cow position:
               chr5:4710415-4709978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 27
               

               Conread position:
               177-620
               

               Cow position:
               chr5:37377594-37378033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 162
               

               Conread position:
               177-627
               

               Cow position:
               chr5:21040247-21039801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 26
               

               Conread position:
               177-627
               

               Cow position:
               chr5:48574048-48573590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               31, 141
               

               Conread position:
               177-642
               

               Cow position:
               chr5:4166396-4166846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 39
               

               Conread position:
               177-642
               

               Cow position:
               chr5:28247902-28248377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               309
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               60, 31
               

               Conread position:
               177-671
               

               Cow position:
               chr5:53855430-53855933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 39
               

               Conread position:
               177-715
               

               Cow position:
               chr5:34463863-34463298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               375
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               72, 34
               

               Conread position:
               177-729
               

               Cow position:
               chr5:32378598-32379120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 33
               

               Conread position:
               178-431
               

               Cow position:
               chr5:14538922-14538671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               74, 31
               

               Conread position:
               178-500
               

               Cow position:
               chr5:54714015-54713673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               245
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               78, 31
               

               Conread position:
               178-539
               

               Cow position:
               chr5:23140851-23140489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               254
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               30, 49
               

               Conread position:
               178-578
               

               Cow position:
               chr5:6896401-6895988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               262
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               38, 22
               

               Conread position:
               179-591
               

               Cow position:
               chr5:26990121-26990540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 30
               

               Conread position:
               179-607
               

               Cow position:
               chr5:29771246-29771695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 31
               

               Conread position:
               180-538
               

               Cow position:
               chr5:26133345-26132998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               247
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               69, 36
               

               Conread position:
               180-585
               

               Cow position:
               chr5:37758075-37757693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               286
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               74, 30
               

               Conread position:
               181-581
               

               Cow position:
               chr5:56523904-56524316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               287
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               113, 27
               

               Conread position:
               181-590
               

               Cow position:
               chr5:17999766-17999345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 39
               

               Conread position:
               182-437
               

               Cow position:
               chr5:55942667-55942404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               70, 25
               

               Conread position:
               182-472
               

               Cow position:
               chr5:16184823-16185117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               221
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               72, 20
               

               Conread position:
               182-491
               

               Cow position:
               chr5:34115379-34115702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 145
               

               Conread position:
               182-538
               

               Cow position:
               chr5:33414674-33414312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 27
               

               Conread position:
               182-569
               

               Cow position:
               chr5:57935382-57934978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               281
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               182-576
               

               Cow position:
               chr5:20783357-20783759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               125, 34
               

               Conread position:
               182-578
               

               Cow position:
               chr5:74015671-74016079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               75, 39
               

               Conread position:
               182-590
               

               Cow position:
               chr5:6504139-6503730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 34
               

               Conread position:
               182-590
               

               Cow position:
               chr5:14550855-14550433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 34
               

               Conread position:
               182-590
               

               Cow position:
               chr5:40889552-40889146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               292
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               127, 30
               

               Conread position:
               182-590
               

               Cow position:
               chr5:50722781-50723197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 34
               

               Conread position:
               182-591
               

               Cow position:
               chr5:42845869-42845439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 38
               

               Conread position:
               182-592
               

               Cow position:
               chr5:35763021-35763408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 34
               

               Conread position:
               182-596
               

               Cow position:
               chr5:7193163-7193572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               292
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               75, 34
               

               Conread position:
               182-603
               

               Cow position:
               chr5:46104209-46103798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               286
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               39, 43
               

               Conread position:
               182-616
               

               Cow position:
               chr5:41981132-41981544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 34
               

               Conread position:
               182-671
               

               Cow position:
               chr5:50821519-50822016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 28
               

               Conread position:
               182-694
               

               Cow position:
               chr5:5111346-5110817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               365
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               55, 28
               

               Conread position:
               183-463
               

               Cow position:
               chr5:42676969-42677253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               135, 28
               

               Conread position:
               183-490
               

               Cow position:
               chr5:71504849-71505176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               219
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               183-585
               

               Cow position:
               chr5:32394330-32394745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 46
               

               Conread position:
               183-590
               

               Cow position:
               chr5:42063935-42064356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 44
               

               Conread position:
               183-590
               

               Cow position:
               chr5:55756709-55756264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               304
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               124, 13
               

               Conread position:
               184-570
               

               Cow position:
               chr5:63992431-63992041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               278
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               68, 26
               

               Conread position:
               184-588
               

               Cow position:
               chr5:72903503-72903087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 259
               

               Conread position:
               185-566
               

               Cow position:
               chr5:64139297-64139687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               281
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               64, 31
               

               Conread position:
               186-532
               

               Cow position:
               chr5:44583383-44583050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               254
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               68, 23
               

               Conread position:
               188-558
               

               Cow position:
               chr5:50637568-50637940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               267
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               64, 22
               

               Conread position:
               188-614
               

               Cow position:
               chr5:64321485-64321923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               306
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               66, 22
               

               Conread position:
               188-693
               

               Cow position:
               chr5:3491938-3492425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               350
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               49, 22
               

               Conread position:
               189-538
               

               Cow position:
               chr5:34049847-34050217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               115, 38
               

               Conread position:
               189-608
               

               Cow position:
               chr5:44994311-44993879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 226
               

               Conread position:
               190-522
               

               Cow position:
               chr5:34638624-34638967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               47, 26
               

               Conread position:
               190-591
               

               Cow position:
               chr5:21828595-21829019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 362
               

               Conread position:
               190-591
               

               Cow position:
               chr5:65776656-65776232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 259
               

               Conread position:
               191-415
               

               Cow position:
               chr5:37366630-37366872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               193-612
               

               Cow position:
               chr5:62870293-62869880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               291
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               44, 23
               

               Conread position:
               195-589
               

               Cow position:
               chr5:4347971-4347554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               294
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               59, 26
               

               Conread position:
               197-671
               

               Cow position:
               chr5:31640170-31640660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 40
               

               Conread position:
               200-578
               

               Cow position:
               chr5:51502759-51503142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               256
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               37, 27
               

               Conread position:
               201-469
               

               Cow position:
               chr5:9859975-9859685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               201-595
               

               Cow position:
               chr5:36854954-36855364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 129
               

               Conread position:
               203-391
               

               Cow position:
               chr5:24837195-24837001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               19, 8
               

               Conread position:
               203-472
               

               Cow position:
               chr5:30639104-30638834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 18
               

               Conread position:
               203-589
               

               Cow position:
               chr5:54350616-54350211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 8
               

               Conread position:
               204-399
               

               Cow position:
               chr5:39419037-39418836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               18, 7
               

               Conread position:
               204-570
               

               Cow position:
               chr5:8024437-8024069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 7
               

               Conread position:
               206-591
               

               Cow position:
               chr5:69337583-69337972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 15
               

               Conread position:
               208-574
               

               Cow position:
               chr5:51999968-52000353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 316
               

               Conread position:
               208-588
               

               Cow position:
               chr5:41164838-41165237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               209-473
               

               Cow position:
               chr5:72310467-72310733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               44, 12
               

               Conread position:
               209-517
               

               Cow position:
               chr5:32140956-32140630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               240
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               9, 34
               

               Conread position:
               210-434
               

               Cow position:
               chr5:32963878-32963641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               13, 162
               

               Conread position:
               210-494
               

               Cow position:
               chr5:1779509-1779231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               11, 20
               

               Conread position:
               210-574
               

               Cow position:
               chr5:27306069-27306439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               11, 20
               

               Conread position:
               210-591
               

               Cow position:
               chr5:1247030-1247415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               274
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               11, 161
               

               Conread position:
               210-591
               

               Cow position:
               chr5:67212131-67212512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 13
               

               Conread position:
               210-599
               

               Cow position:
               chr5:40595249-40594870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               270
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               48, 11
               

               Conread position:
               210-615
               

               Cow position:
               chr5:57626562-57626960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               288
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               44, 11
               

               Conread position:
               212-445
               

               Cow position:
               chr5:16668333-16668562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               96, 17
               

               Conread position:
               212-589
               

               Cow position:
               chr5:14904313-14903917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 42
               

               Conread position:
               212-590
               

               Cow position:
               chr5:35684689-35685088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               275
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               214-590
               

               Cow position:
               chr5:30253500-30253892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 60
               

               Conread position:
               214-610
               

               Cow position:
               chr5:54086296-54086709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 40
               

               Conread position:
               214-648
               

               Cow position:
               chr5:67932704-67932279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               306
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               40, 9
               

               Conread position:
               216-545
               

               Cow position:
               chr5:4617134-4617472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               237
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               5, 123
               

               Conread position:
               216-667
               

               Cow position:
               chr5:43992084-43992555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 6
               

               Conread position:
               217-590
               

               Cow position:
               chr5:17063335-17062930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 271
               

               Conread position:
               219-592
               

               Cow position:
               chr5:40109262-40109645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               263
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               30, 178
               

               Conread position:
               220-397
               

               Cow position:
               chr5:15462480-15462666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               89, 52
               

               Conread position:
               220-423
               

               Cow position:
               chr5:50729257-50729473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               29, 196
               

               Conread position:
               220-434
               

               Cow position:
               chr5:6575821-6575601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               89, 28
               

               Conread position:
               220-477
               

               Cow position:
               chr5:56433563-56433843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               220-491
               

               Cow position:
               chr5:41523031-41522753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               42, 143
               

               Conread position:
               220-497
               

               Cow position:
               chr5:43474609-43474901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               38, 230
               

               Conread position:
               220-505
               

               Cow position:
               chr5:2500419-2500116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               89, 34
               

               Conread position:
               220-555
               

               Cow position:
               chr5:43738186-43737847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               252
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               34, 22
               

               Conread position:
               220-563
               

               Cow position:
               chr5:24348873-24349231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               220-567
               

               Cow position:
               chr5:32956328-32955968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               33, 103
               

               Conread position:
               220-577
               

               Cow position:
               chr5:72007087-72006727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               254
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               17, 5
               

               Conread position:
               220-581
               

               Cow position:
               chr5:12323039-12322663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               259
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               21, 9
               

               Conread position:
               220-589
               

               Cow position:
               chr5:11668416-11668035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               220-589
               

               Cow position:
               chr5:67243686-67244068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               29, 178
               

               Conread position:
               220-590
               

               Cow position:
               chr5:30844874-30845259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 18
               

               Conread position:
               220-590
               

               Cow position:
               chr5:32975789-32975409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               267
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               34, 220
               

               Conread position:
               220-590
               

               Cow position:
               chr5:35208023-35208412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 156
               

               Conread position:
               220-591
               

               Cow position:
               chr5:30487010-30487375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               274
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               41, 34
               

               Conread position:
               220-591
               

               Cow position:
               chr5:55233018-55232661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               11, 39
               

               Conread position:
               220-591
               

               Cow position:
               chr5:66338846-66339227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               250
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               38, 81
               

               Conread position:
               220-592
               

               Cow position:
               chr5:16894012-16893619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 168
               

               Conread position:
               220-592
               

               Cow position:
               chr5:49474766-49474393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               266
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               76, 66
               

               Conread position:
               220-619
               

               Cow position:
               chr5:43929972-43929555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 138
               

               Conread position:
               220-649
               

               Cow position:
               chr5:49685519-49685067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 345
               

               Conread position:
               221-358
               

               Cow position:
               chr5:26541059-26541203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               221-385
               

               Cow position:
               chr5:20691696-20691532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               33, 130
               

               Conread position:
               221-397
               

               Cow position:
               chr5:24642959-24642775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               221-399
               

               Cow position:
               chr5:33537657-33537842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               86, 149
               

               Conread position:
               221-538
               

               Cow position:
               chr5:73079975-73080304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               241
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               35, 65
               

               Conread position:
               221-542
               

               Cow position:
               chr5:31918416-31918745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               239
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               34, 173
               

               Conread position:
               221-566
               

               Cow position:
               chr5:42744560-42744907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 73
               

               Conread position:
               221-576
               

               Cow position:
               chr5:37814386-37814763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               30, 158
               

               Conread position:
               221-578
               

               Cow position:
               chr5:31660875-31660518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               14, 133
               

               Conread position:
               221-699
               

               Cow position:
               chr5:34300688-34301184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 97
               

               Conread position:
               222-591
               

               Cow position:
               chr5:29353365-29352976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 66
               

               Conread position:
               223-468
               

               Cow position:
               chr5:54064544-54064801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               27, 206
               

               Conread position:
               223-560
               

               Cow position:
               chr5:58793850-58793486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               223-561
               

               Cow position:
               chr5:65588477-65588821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 31
               

               Conread position:
               224-578
               

               Cow position:
               chr5:24996458-24996084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               30, 44
               

               Conread position:
               224-632
               

               Cow position:
               chr5:9090257-9089838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 206
               

               Conread position:
               224-662
               

               Cow position:
               chr5:46323046-46322580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 279
               

               Conread position:
               225-479
               

               Cow position:
               chr5:56135202-56134929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               29, 269
               

               Conread position:
               225-570
               

               Cow position:
               chr5:15426295-15426669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               225-612
               

               Cow position:
               chr5:6683581-6683196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 101
               

               Conread position:
               225-642
               

               Cow position:
               chr5:28324112-28324541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               306
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               29, 249
               

               Conread position:
               225-649
               

               Cow position:
               chr5:59326061-59325631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 125
               

               Conread position:
               226-581
               

               Cow position:
               chr5:43457748-43457389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               246
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               33, 169
               

               Conread position:
               226-590
               

               Cow position:
               chr5:20127822-20128203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 59
               

               Conread position:
               227-501
               

               Cow position:
               chr5:34885387-34885104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               31, 102
               

               Conread position:
               227-578
               

               Cow position:
               chr5:72895461-72895825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               235
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               24, 143
               

               Conread position:
               227-590
               

               Cow position:
               chr5:56070622-56071011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               269
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               228-570
               

               Cow position:
               chr5:27172191-27171862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               243
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               26, 86
               

               Conread position:
               230-491
               

               Cow position:
               chr5:60126149-60126422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               79, 122
               

               Conread position:
               231-540
               

               Cow position:
               chr5:65765339-65765028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               18, 68
               

               Conread position:
               231-587
               

               Cow position:
               chr5:36868518-36868883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 108
               

               Conread position:
               231-590
               

               Cow position:
               chr5:52165409-52165028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 313
               

               Conread position:
               231-590
               

               Cow position:
               chr5:64137024-64137407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               231-591
               

               Cow position:
               chr5:19278919-19278555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               27, 102
               

               Conread position:
               231-624
               

               Cow position:
               chr5:16938235-16937844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               23, 165
               

               Conread position:
               232-517
               

               Cow position:
               chr5:49362213-49361917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               76, 39
               

               Conread position:
               233-569
               

               Cow position:
               chr5:19813437-19813090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               36, 159
               

               Conread position:
               233-649
               

               Cow position:
               chr5:25495563-25495162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               290
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               25, 87
               

               Conread position:
               235-575
               

               Cow position:
               chr5:62142451-62142812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               235-581
               

               Cow position:
               chr5:68718660-68719009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               22, 63
               

               Conread position:
               236-491
               

               Cow position:
               chr5:66831932-66831661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               238-536
               

               Cow position:
               chr5:48154689-48154368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               216
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               60, 78
               

               Conread position:
               240-578
               

               Cow position:
               chr5:1688327-1687976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               223
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               78, 230
               

               Conread position:
               241-577
               

               Cow position:
               chr5:40388079-40387744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               53, 79
               

               Conread position:
               242-427
               

               Cow position:
               chr5:5848403-5848206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               242-677
               

               Cow position:
               chr5:23169031-23168581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 67
               

               Conread position:
               244-581
               

               Cow position:
               chr5:15363678-15364024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               9, 153
               

               Conread position:
               245-486
               

               Cow position:
               chr5:46499089-46499342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               245-578
               

               Cow position:
               chr5:8821221-8820874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               236
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               55, 142
               

               Conread position:
               246-538
               

               Cow position:
               chr5:52040527-52040224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               54, 9
               

               Conread position:
               246-592
               

               Cow position:
               chr5:64758971-64758614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 8
               

               Conread position:
               246-650
               

               Cow position:
               chr5:57736906-57737310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 155
               

               Conread position:
               247-427
               

               Cow position:
               chr5:72845980-72845797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               81, 58
               

               Conread position:
               248-434
               

               Cow position:
               chr5:57271471-57271275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               248-477
               

               Cow position:
               chr5:45036815-45037049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               61, 128
               

               Conread position:
               248-479
               

               Cow position:
               chr5:43395344-43395114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               61, 41
               

               Conread position:
               248-492
               

               Cow position:
               chr5:7140311-7140056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               248-494
               

               Cow position:
               chr5:1766550-1766297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               60, 94
               

               Conread position:
               248-494
               

               Cow position:
               chr5:18090521-18090790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               248-501
               

               Cow position:
               chr5:12709679-12709948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               248-505
               

               Cow position:
               chr5:58229499-58229759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               57, 190
               

               Conread position:
               248-508
               

               Cow position:
               chr5:40039977-40039704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               70, 265
               

               Conread position:
               248-534
               

               Cow position:
               chr5:29212742-29213033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               61, 164
               

               Conread position:
               248-534
               

               Cow position:
               chr5:56820466-56820167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 34
               

               Conread position:
               248-538
               

               Cow position:
               chr5:65601254-65601556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               216
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               57, 162
               

               Conread position:
               248-558
               

               Cow position:
               chr5:32697019-32696704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 70
               

               Conread position:
               248-570
               

               Cow position:
               chr5:15722260-15721943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               141, 10
               

               Conread position:
               248-570
               

               Cow position:
               chr5:45803854-45804191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               56, 151
               

               Conread position:
               248-573
               

               Cow position:
               chr5:27154816-27155139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               231
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               48, 116
               

               Conread position:
               248-577
               

               Cow position:
               chr5:26262880-26262541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 127
               

               Conread position:
               248-578
               

               Cow position:
               chr5:16025667-16025329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 164
               

               Conread position:
               248-578
               

               Cow position:
               chr5:18898777-18899112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 130
               

               Conread position:
               248-578
               

               Cow position:
               chr5:71454801-71454473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               47, 143
               

               Conread position:
               248-579
               

               Cow position:
               chr5:37646757-37646404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 104
               

               Conread position:
               248-581
               

               Cow position:
               chr5:5257503-5257146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 117
               

               Conread position:
               248-581
               

               Cow position:
               chr5:22242991-22242623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               61, 15
               

               Conread position:
               248-582
               

               Cow position:
               chr5:38832913-38833264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               247
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               63, 242
               

               Conread position:
               248-585
               

               Cow position:
               chr5:48757738-48758086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               46, 121
               

               Conread position:
               248-585
               

               Cow position:
               chr5:58320668-58320325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               61, 115
               

               Conread position:
               248-587
               

               Cow position:
               chr5:71494610-71494969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               248-588
               

               Cow position:
               chr5:4280257-4280597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 119
               

               Conread position:
               248-588
               

               Cow position:
               chr5:55967089-55966734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               52, 329
               

               Conread position:
               248-590
               

               Cow position:
               chr5:56028737-56028390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               247
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               61, 194
               

               Conread position:
               248-591
               

               Cow position:
               chr5:44049496-44049850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               239
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               57, 76
               

               Conread position:
               248-591
               

               Cow position:
               chr5:51053854-51053496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 143
               

               Conread position:
               248-591
               

               Cow position:
               chr5:57074541-57074178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               251
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               70, 170
               

               Conread position:
               248-591
               

               Cow position:
               chr5:71768667-71768354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               227, 72
               

               Conread position:
               248-592
               

               Cow position:
               chr5:28302946-28302590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               104, 87
               

               Conread position:
               248-596
               

               Cow position:
               chr5:39258331-39258663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 23
               

               Conread position:
               248-602
               

               Cow position:
               chr5:11229880-11229510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               56, 197
               

               Conread position:
               248-604
               

               Cow position:
               chr5:25035433-25035094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 56
               

               Conread position:
               248-622
               

               Cow position:
               chr5:64823519-64823147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               250
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               70, 150
               

               Conread position:
               248-623
               

               Cow position:
               chr5:28229951-28230345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               276
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               70, 104
               

               Conread position:
               248-643
               

               Cow position:
               chr5:58144810-58144420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 240
               

               Conread position:
               248-649
               

               Cow position:
               chr5:35969336-35969728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 159
               

               Conread position:
               248-671
               

               Cow position:
               chr5:74858367-74858801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               295
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               70, 363
               

               Conread position:
               249-578
               

               Cow position:
               chr5:22643424-22643093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               13, 135
               

               Conread position:
               251-477
               

               Cow position:
               chr5:8994769-8994530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               67, 122
               

               Conread position:
               251-477
               

               Cow position:
               chr5:51490957-51490729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               60, 26
               

               Conread position:
               251-514
               

               Cow position:
               chr5:35449050-35449311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               62, 139
               

               Conread position:
               251-533
               

               Cow position:
               chr5:741150-740846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               208
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               43, 183
               

               Conread position:
               251-570
               

               Cow position:
               chr5:7044914-7044574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               9, 16
               

               Conread position:
               251-589
               

               Cow position:
               chr5:64176324-64175976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               58, 167
               

               Conread position:
               251-718
               

               Cow position:
               chr5:458278-458753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 217
               

               Conread position:
               252-492
               

               Cow position:
               chr5:35235911-35235659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               66, 134
               

               Conread position:
               252-572
               

               Cow position:
               chr5:75828937-75828620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               214
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               61, 18
               

               Conread position:
               252-581
               

               Cow position:
               chr5:3771644-3771988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 237
               

               Conread position:
               253-559
               

               Cow position:
               chr5:9390334-9390677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               237
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               56, 125
               

               Conread position:
               254-620
               

               Cow position:
               chr5:56518410-56518042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               51, 192
               

               Conread position:
               255-494
               

               Cow position:
               chr5:1027891-1027642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               63, 42
               

               Conread position:
               256-505
               

               Cow position:
               chr5:75230485-75230730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               53, 168
               

               Conread position:
               256-566
               

               Cow position:
               chr5:57575567-57575900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               55, 236
               

               Conread position:
               256-591
               

               Cow position:
               chr5:50943352-50943004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               53, 161
               

               Conread position:
               257-495
               

               Cow position:
               chr5:24485623-24485381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               131, 68
               

               Conread position:
               257-606
               

               Cow position:
               chr5:69731320-69731669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 62
               

               Conread position:
               259-591
               

               Cow position:
               chr5:34561813-34562170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               260-504
               

               Cow position:
               chr5:1678204-1678454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               7, 58
               

               Conread position:
               260-537
               

               Cow position:
               chr5:8163018-8162720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               262-570
               

               Cow position:
               chr5:74003820-74003504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               50, 84
               

               Conread position:
               263-568
               

               Cow position:
               chr5:6286618-6286304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               37, 153
               

               Conread position:
               264-585
               

               Cow position:
               chr5:7723480-7723810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               54, 144
               

               Conread position:
               264-589
               

               Cow position:
               chr5:5855689-5856008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 87
               

               Conread position:
               264-591
               

               Cow position:
               chr5:69461144-69461487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 144
               

               Conread position:
               264-676
               

               Cow position:
               chr5:4220790-4221212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 185
               

               Conread position:
               265-566
               

               Cow position:
               chr5:48010036-48009732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               228
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               46, 180
               

               Conread position:
               265-581
               

               Cow position:
               chr5:7755742-7755429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               123, 51
               

               Conread position:
               270-472
               

               Cow position:
               chr5:17644840-17644625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               270-612
               

               Cow position:
               chr5:61810608-61810943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 82
               

               Conread position:
               271-579
               

               Cow position:
               chr5:3639666-3639357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               10, 73
               

               Conread position:
               271-581
               

               Cow position:
               chr5:34624785-34625102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               78, 47
               

               Conread position:
               271-590
               

               Cow position:
               chr5:37808848-37808512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 71
               

               Conread position:
               272-555
               

               Cow position:
               chr5:55928760-55929060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               46, 106
               

               Conread position:
               275-622
               

               Cow position:
               chr5:31923202-31923557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               224
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               113, 42
               

               Conread position:
               276-501
               

               Cow position:
               chr5:3668719-3668957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               42, 140
               

               Conread position:
               276-581
               

               Cow position:
               chr5:44028480-44028167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               32, 121
               

               Conread position:
               276-595
               

               Cow position:
               chr5:41713131-41713457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               54, 34
               

               Conread position:
               279-614
               

               Cow position:
               chr5:62638730-62639081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               16, 217
               

               Conread position:
               280-583
               

               Cow position:
               chr5:76366457-76366152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               58, 38
               

               Conread position:
               281-590
               

               Cow position:
               chr5:3549951-3549650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               224
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               40, 51
               

               Conread position:
               282-642
               

               Cow position:
               chr5:59115208-59115583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               266
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               36, 234
               

               Conread position:
               289-591
               

               Cow position:
               chr5:70952035-70951738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               26, 15
               

               Conread position:
               292-590
               

               Cow position:
               chr5:57768135-57767836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               25, 37
               

               Conread position:
               294-581
               

               Cow position:
               chr5:54089887-54090177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               21, 84
               

               Conread position:
               294-714
               

               Cow position:
               chr5:29980137-29979713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               258
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               21, 82
               

               Conread position:
               297-581
               

               Cow position:
               chr5:20422331-20422052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               53, 18
               

               Conread position:
               300-562
               

               Cow position:
               chr5:67540347-67540078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               86, 6
               

               Conread position:
               300-581
               

               Cow position:
               chr5:57101924-57101641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               21, 107
               

               Conread position:
               301-591
               

               Cow position:
               chr5:42050403-42050705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               14, 102
               

               Conread position:
               303-512
               

               Cow position:
               chr5:12566870-12566668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 17
               

               Conread position:
               303-533
               

               Cow position:
               chr5:69520748-69520985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               18, 116
               

               Conread position:
               303-551
               

               Cow position:
               chr5:41010139-41009892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               12, 84
               

               Conread position:
               303-555
               

               Cow position:
               chr5:65883922-65883656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               303-581
               

               Cow position:
               chr5:45397436-45397711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               85, 17
               

               Conread position:
               303-585
               

               Cow position:
               chr5:39874979-39875270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               303-590
               

               Cow position:
               chr5:56877346-56877633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               85, 17
               

               Conread position:
               303-591
               

               Cow position:
               chr5:12673606-12673326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               12, 30
               

               Conread position:
               303-591
               

               Cow position:
               chr5:66972281-66972581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               303-593
               

               Cow position:
               chr5:46512909-46512617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               12, 127
               

               Conread position:
               303-593
               

               Cow position:
               chr5:54750690-54750961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               10, 99
               

               Conread position:
               303-617
               

               Cow position:
               chr5:30950062-30949737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 108
               

               Conread position:
               303-617
               

               Cow position:
               chr5:56317152-56317464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 151
               

               Conread position:
               304-578
               

               Cow position:
               chr5:14629958-14629666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               304-591
               

               Cow position:
               chr5:30629303-30629005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               17, 107
               

               Conread position:
               304-592
               

               Cow position:
               chr5:65967873-65967578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               11, 97
               

               Conread position:
               305-582
               

               Cow position:
               chr5:74580652-74580932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               10, 87
               

               Conread position:
               305-590
               

               Cow position:
               chr5:56014594-56014881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               131, 20
               

               Conread position:
               312-642
               

               Cow position:
               chr5:54060141-54060478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 110
               

               Conread position:
               320-589
               

               Cow position:
               chr5:44446995-44446715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               320-589
               

               Cow position:
               chr5:73168125-73167862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               48, 11
               

               Conread position:
               320-590
               

               Cow position:
               chr5:12761243-12760971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               36, 26
               

               Conread position:
               320-590
               

               Cow position:
               chr5:18289002-18289273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 161
               

               Conread position:
               320-591
               

               Cow position:
               chr5:991339-991626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               68, 120
               

               Conread position:
               320-619
               

               Cow position:
               chr5:45273628-45273322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               215
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               45, 247
               

               Conread position:
               320-620
               

               Cow position:
               chr5:63427133-63426824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               228
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               39, 26
               

               Conread position:
               320-636
               

               Cow position:
               chr5:44726453-44726136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               68, 111
               

               Conread position:
               320-667
               

               Cow position:
               chr5:54768037-54767678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 156
               

               Conread position:
               320-671
               

               Cow position:
               chr5:51935059-51935434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 125
               

               Conread position:
               321-586
               

               Cow position:
               chr5:56680121-56680405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               321-590
               

               Cow position:
               chr5:35247236-35246959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               209
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               42, 98
               

               Conread position:
               321-591
               

               Cow position:
               chr5:64140404-64140688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               37, 68
               

               Conread position:
               323-591
               

               Cow position:
               chr5:55955785-55956064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               65, 31
               

               Conread position:
               324-581
               

               Cow position:
               chr5:32339087-32338824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               64, 140
               

               Conread position:
               327-590
               

               Cow position:
               chr5:57419913-57419643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               328-633
               

               Cow position:
               chr5:47696561-47696258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               56, 90
               

               Conread position:
               328-650
               

               Cow position:
               chr5:49440991-49440663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               58, 235
               

               Conread position:
               328-671
               

               Cow position:
               chr5:7057525-7057183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               33, 201
               

               Conread position:
               332-652
               

               Cow position:
               chr5:13717686-13717360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 218
               

               Conread position:
               336-591
               

               Cow position:
               chr5:45574504-45574772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               338-579
               

               Cow position:
               chr5:60016058-60016305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               338-611
               

               Cow position:
               chr5:7697896-7698171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               50, 100
               

               Conread position:
               338-671
               

               Cow position:
               chr5:23678813-23678467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 216
               

               Conread position:
               341-568
               

               Cow position:
               chr5:453459-453686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               341-609
               

               Cow position:
               chr5:30232793-30233071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               47, 221
               

               Conread position:
               343-642
               

               Cow position:
               chr5:64592200-64591890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               7, 100
               

               Conread position:
               345-620
               

               Cow position:
               chr5:62378689-62378959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               43, 87
               

               Conread position:
               347-559
               

               Cow position:
               chr5:56635800-56636015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               16, 89
               

               Conread position:
               347-582
               

               Cow position:
               chr5:60747378-60747137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               41, 163
               

               Conread position:
               347-590
               

               Cow position:
               chr5:12901815-12902068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               16, 114
               

               Conread position:
               347-590
               

               Cow position:
               chr5:33560834-33560583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               347-590
               

               Cow position:
               chr5:35125953-35126206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               347-590
               

               Cow position:
               chr5:53946795-53947048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               347-591
               

               Cow position:
               chr5:12557392-12557135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               41, 170
               

               Conread position:
               347-591
               

               Cow position:
               chr5:36039104-36038850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               37, 244
               

               Conread position:
               347-654
               

               Cow position:
               chr5:41293980-41294297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 125
               

               Conread position:
               348-720
               

               Cow position:
               chr5:55019194-55019575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 66
               

               Conread position:
               349-578
               

               Cow position:
               chr5:35785074-35784850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               14, 36
               

               Conread position:
               349-593
               

               Cow position:
               chr5:35459392-35459139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               193
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               39, 12
               

               Conread position:
               349-671
               

               Cow position:
               chr5:58446705-58447042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 235
               

               Conread position:
               350-589
               

               Cow position:
               chr5:33833948-33834188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               38, 10
               

               Conread position:
               350-591
               

               Cow position:
               chr5:46681812-46681568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               10, 36
               

               Conread position:
               350-622
               

               Cow position:
               chr5:46684044-46683769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               10, 36
               

               Conread position:
               350-722
               

               Cow position:
               chr5:59873187-59872800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               276
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               351-589
               

               Cow position:
               chr5:54375603-54375352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               355-575
               

               Cow position:
               chr5:35976429-35976646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               33, 52
               

               Conread position:
               355-581
               

               Cow position:
               chr5:14473505-14473261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               355-590
               

               Cow position:
               chr5:19523808-19524051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               33, 78
               

               Conread position:
               355-590
               

               Cow position:
               chr5:53710782-53710538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               355-590
               

               Cow position:
               chr5:71015972-71015734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               33, 75
               

               Conread position:
               355-591
               

               Cow position:
               chr5:50575693-50575935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               29, 188
               

               Conread position:
               355-606
               

               Cow position:
               chr5:46023147-46022897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               44, 7
               

               Conread position:
               355-617
               

               Cow position:
               chr5:1087288-1087015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               46, 83
               

               Conread position:
               355-667
               

               Cow position:
               chr5:63234921-63234618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               236
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               20, 131
               

               Conread position:
               357-581
               

               Cow position:
               chr5:47323375-47323604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 94
               

               Conread position:
               359-591
               

               Cow position:
               chr5:66551987-66551744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               362-590
               

               Cow position:
               chr5:57527003-57526778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               26, 107
               

               Conread position:
               362-622
               

               Cow position:
               chr5:1165089-1165350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               26, 112
               

               Conread position:
               364-581
               

               Cow position:
               chr5:12556245-12556460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               24, 65
               

               Conread position:
               364-585
               

               Cow position:
               chr5:23529363-23529137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               26, 116
               

               Conread position:
               364-587
               

               Cow position:
               chr5:29515573-29515358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               62, 11
               

               Conread position:
               364-591
               

               Cow position:
               chr5:50713854-50713604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               368-591
               

               Cow position:
               chr5:19752226-19752454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               20, 142
               

               Conread position:
               369-590
               

               Cow position:
               chr5:16939663-16939443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               106, 20
               

               Conread position:
               370-590
               

               Cow position:
               chr5:57756108-57755884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               18, 111
               

               Conread position:
               371-591
               

               Cow position:
               chr5:30805092-30805316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               17, 49
               
UCSC Genome Browser
               Conread position:
               372-590
               

               Cow position:
               chr5:57994939-57994728 (view  custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               103, 76
               
UCSC Genome Browser
               
               
               
Conread position: 379-590

               
               
               
Cow position: chr5:11769200-11769421 (view  custom track)

               
               
               
Alignm length: 222

               
               
               
Alignm identity: 160

               
               
               
Alignm E-value: 4e-29

               
               
               
Alignm gaps (pig, cow): 9, 0
UCSC Genome Browser
               
               
               
Conread position: 384-590

               
               
               
Cow position: chr5:41935713-41935506 (view  custom track)

               
               
               
Alignm length: 212

               
               
               
Alignm identity: 152

               
               
               
Alignm E-value: 3e-27

               
               
               
Alignm gaps (pig, cow): 48, 128

               
               
               Conread position:386-570
               
               
               Cow position:chr5:40237156-40237342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:387-570
               
               
               Cow position:chr5:63627584-63627404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:387-591
               
               
               Cow position:chr5:63059010-63059213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 113

               
               
               Conread position:387-791
               
               
               Cow position:chr5:49342110-49341694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):35, 204

               
               
               Conread position:388-591
               
               
               Cow position:chr5:61455787-61455995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 122

               
               
               Conread position:389-623
               
               
               Cow position:chr5:45420191-45419960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:390-589
               
               
               Cow position:chr5:20995151-20994936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:390-620
               
               
               Cow position:chr5:56339074-56338838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:400-578
               
               
               Cow position:chr5:56153570-56153754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):45, 123

               
               
               Conread position:400-590
               
               
               Cow position:chr5:52001665-52001472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 53

               
               
               Conread position:400-590
               
               
               Cow position:chr5:63240932-63241128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:406-589
               
               
               Cow position:chr5:36838919-36839109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 163

               
               
               Conread position:406-590
               
               
               Cow position:chr5:50101416-50101223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:406-591
               
               
               Cow position:chr5:30247558-30247375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:407-578
               
               
               Cow position:chr5:2851551-2851729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:407-579
               
               
               Cow position:chr5:49501862-49501684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:148
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:407-589
               
               
               Cow position:chr5:55796002-55795816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:407-592
               
               
               Cow position:chr5:15470895-15471082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:407-622
               
               
               Cow position:chr5:20843437-20843211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 207

               
               
               Conread position:407-650
               
               
               Cow position:chr5:6444188-6443954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):68, 48

               
               
               Conread position:407-650
               
               
               Cow position:chr5:45148400-45148154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:407-667
               
               
               Cow position:chr5:57156351-57156095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:408-590
               
               
               Cow position:chr5:57686777-57686586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:409-591
               
               
               Cow position:chr5:57101561-57101372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:409-595
               
               
               Cow position:chr5:61784763-61784571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 143

               
               
               Conread position:410-591
               
               
               Cow position:chr5:17602235-17602053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:411-590
               
               
               Cow position:chr5:3588993-3589178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:411-607
               
               
               Cow position:chr5:33273657-33273858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):25, 177

               
               
               Conread position:412-566
               
               
               Cow position:chr5:60188957-60189120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:412-572
               
               
               Cow position:chr5:48867493-48867331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:413-569
               
               
               Cow position:chr5:45574399-45574235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:413-591
               
               
               Cow position:chr5:9369298-9369121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):62, 23

               
               
               Conread position:415-650
               
               
               Cow position:chr5:52108296-52108069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:417-578
               
               
               Cow position:chr5:38717288-38717448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 19

               
               
               Conread position:417-595
               
               
               Cow position:chr5:57230367-57230180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:417-655
               
               
               Cow position:chr5:61875515-61875747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:422-650
               
               
               Cow position:chr5:58555112-58555345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):21, 177

               
               
               Conread position:430-592
               
               
               Cow position:chr5:56287516-56287349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:430-671
               
               
               Cow position:chr5:18062331-18062096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:436-575
               
               
               Cow position:chr5:4267663-4267806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:436-588
               
               
               Cow position:chr5:17384157-17384007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:436-589
               
               
               Cow position:chr5:24946233-24946390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 128

               
               
               Conread position:436-589
               
               
               Cow position:chr5:59627093-59627250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:437-591
               
               
               Cow position:chr5:22795211-22795366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:437-605
               
               
               Cow position:chr5:33155812-33155980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:437-609
               
               
               Cow position:chr5:43844669-43844498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 139

               
               
               Conread position:438-591
               
               
               Cow position:chr5:57062534-57062376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 141

               
               
               Conread position:438-621
               
               
               Cow position:chr5:63656472-63656660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 166

               
               
               Conread position:439-590
               
               
               Cow position:chr5:35513211-35513366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:439-590
               
               
               Cow position:chr5:65679974-65679824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 135

               
               
               Conread position:439-613
               
               
               Cow position:chr5:57150661-57150840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 159

               
               
               Conread position:440-611
               
               
               Cow position:chr5:51490248-51490078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:440-620
               
               
               Cow position:chr5:55129340-55129523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 164

               
               
               Conread position:441-590
               
               
               Cow position:chr5:2827372-2827524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:441-607
               
               
               Cow position:chr5:67634519-67634347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 158

               
               
               Conread position:441-649
               
               
               Cow position:chr5:56428313-56428104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:442-591
               
               
               Cow position:chr5:56613565-56613411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:442-620
               
               
               Cow position:chr5:60908665-60908844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:445-590
               
               
               Cow position:chr5:17566436-17566287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 38

               
               
               Conread position:445-590
               
               
               Cow position:chr5:61049334-61049483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:446-590
               
               
               Cow position:chr5:5016432-5016576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:447-609
               
               
               Cow position:chr5:3743326-3743487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 121

               
               
               Conread position:448-598
               
               
               Cow position:chr5:7713776-7713920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:450-591
               
               
               Cow position:chr5:60948140-60948284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:450-668
               
               
               Cow position:chr5:26723455-26723681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:450-673
               
               
               Cow position:chr5:56361803-56362027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 143

               
               
               Conread position:452-592
               
               
               Cow position:chr5:65050202-65050058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:456-620
               
               
               Cow position:chr5:12738542-12738378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:458-593
               
               
               Cow position:chr5:7177166-7177305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:462-620
               
               
               Cow position:chr5:54436775-54436937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:463-668
               
               
               Cow position:chr5:55849905-55850111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:465-649
               
               
               Cow position:chr5:38382777-38382588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 106

               
               
               Conread position:470-591
               
               
               Cow position:chr5:44734698-44734573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:470-593
               
               
               Cow position:chr5:36822914-36823037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):5, 34

               
               
               Conread position:473-667
               
               
               Cow position:chr5:4956581-4956377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 190

               
               
               Conread position:474-591
               
               
               Cow position:chr5:51490570-51490450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:474-632
               
               
               Cow position:chr5:694896-695055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:474-650
               
               
               Cow position:chr5:3677755-3677917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:474-668
               
               
               Cow position:chr5:64843939-64843754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:474-681
               
               
               Cow position:chr5:20882592-20882390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:474-713
               
               
               Cow position:chr5:42623147-42622907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:475-590
               
               
               Cow position:chr5:21003349-21003465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:476-667
               
               
               Cow position:chr5:44901543-44901725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 102

               
               
               Conread position:482-590
               
               
               Cow position:chr5:51125969-51125859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 107

               
               
               Conread position:482-672
               
               
               Cow position:chr5:45037290-45037478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:482-672
               
               
               Cow position:chr5:50087810-50087983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):170, 21

               
               
               Conread position:482-676
               
               
               Cow position:chr5:16185418-16185615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:483-657
               
               
               Cow position:chr5:57744883-57744715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:483-671
               
               
               Cow position:chr5:19298638-19298459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 94

               
               
               Conread position:484-592
               
               
               Cow position:chr5:4864585-4864695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:484-671
               
               
               Cow position:chr5:56539295-56539473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:485-620
               
               
               Cow position:chr5:1090776-1090644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:485-650
               
               
               Cow position:chr5:56485117-56485281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:486-650
               
               
               Cow position:chr5:18091048-18091210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:486-718
               
               
               Cow position:chr5:32262279-32262043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:500-649
               
               
               Cow position:chr5:14354136-14354283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):100, 0
Show alignments to all cow chromosomes.
Conread position:	122-477
Cow position:	chr5:63565974-63566344 (view UCSC Genome Browser custom track)
Alignm length:	377
Alignm identity:	243
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	45, 26
Conread position:	157-581
Cow position:	chr5:34528267-34528688 (view UCSC Genome Browser custom track)
Alignm length:	438
Alignm identity:	318
Alignm E-value:	0
Alignm gaps (pig, cow):	10, 50
Conread position:	158-473
Cow position:	chr5:20344873-20345192 (view UCSC Genome Browser custom track)
Alignm length:	331
Alignm identity:	222
Alignm E-value:	9e-26
Alignm gaps (pig, cow):	9, 54
Conread position:	158-524
Cow position:	chr5:47313177-47313558 (view UCSC Genome Browser custom track)
Alignm length:	386
Alignm identity:	258
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	9, 72
Conread position:	158-555
Cow position:	chr5:31480857-31481264 (view UCSC Genome Browser custom track)
Alignm length:	411
Alignm identity:	277
Alignm E-value:	2.8026e-45
Alignm gaps (pig, cow):	9, 72
Conread position:	158-578
Cow position:	chr5:46611380-46610959 (view UCSC Genome Browser custom track)
Alignm length:	435
Alignm identity:	280
Alignm E-value:	5e-30
Alignm gaps (pig, cow):	9, 53
Conread position:	158-587
Cow position:	chr5:44797011-44796585 (view UCSC Genome Browser custom track)
Alignm length:	444
Alignm identity:	329
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 47
Conread position:	158-590
Cow position:	chr5:18573874-18574325 (view UCSC Genome Browser custom track)
Alignm length:	457
Alignm identity:	321
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 61
Conread position:	158-591
Cow position:	chr5:17087326-17086870 (view UCSC Genome Browser custom track)
Alignm length:	463
Alignm identity:	314
Alignm E-value:	1.99965e-42
Alignm gaps (pig, cow):	13, 61
Conread position:	158-620
Cow position:	chr5:58855806-58856284 (view UCSC Genome Browser custom track)
Alignm length:	482
Alignm identity:	343
Alignm E-value:	0
Alignm gaps (pig, cow):	5, 21
Conread position:	159-494
Cow position:	chr5:10261537-10261181 (view UCSC Genome Browser custom track)
Alignm length:	362
Alignm identity:	247
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	14, 60
Conread position:	160-591
Cow position:	chr5:20779681-20779245 (view UCSC Genome Browser custom track)
Alignm length:	447
Alignm identity:	308
Alignm E-value:	0
Alignm gaps (pig, cow):	15, 49
Conread position:	161-588
Cow position:	chr5:63987738-63987298 (view UCSC Genome Browser custom track)
Alignm length:	447
Alignm identity:	330
Alignm E-value:	0
Alignm gaps (pig, cow):	14, 67
Conread position:	164-433
Cow position:	chr5:60519886-60520151 (view UCSC Genome Browser custom track)
Alignm length:	281
Alignm identity:	204
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	13, 42
Conread position:	164-444
Cow position:	chr5:34288756-34288471 (view UCSC Genome Browser custom track)
Alignm length:	295
Alignm identity:	204
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	13, 49
Conread position:	164-458
Cow position:	chr5:31020403-31020125 (view UCSC Genome Browser custom track)
Alignm length:	300
Alignm identity:	217
Alignm E-value:	8e-35
Alignm gaps (pig, cow):	12, 54
Conread position:	164-499
Cow position:	chr5:51357791-51357449 (view UCSC Genome Browser custom track)
Alignm length:	353
Alignm identity:	237
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	13, 59
Conread position:	164-540
Cow position:	chr5:45705758-45706135 (view UCSC Genome Browser custom track)
Alignm length:	398
Alignm identity:	278
Alignm E-value:	1e-37
Alignm gaps (pig, cow):	7, 54
Conread position:	164-570
Cow position:	chr5:29903811-29903392 (view UCSC Genome Browser custom track)
Alignm length:	429
Alignm identity:	291
Alignm E-value:	1.99993e-41
Alignm gaps (pig, cow):	13, 58
Conread position:	164-575
Cow position:	chr5:65933215-65932807 (view UCSC Genome Browser custom track)
Alignm length:	426
Alignm identity:	298
Alignm E-value:	0
Alignm gaps (pig, cow):	61, 45