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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8040N02.3
        

               
Conread position:
               
124-577
               

               
Cow position:
               
chr6:6596263-6596724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
157-468
               

               
Cow position:
               
chr6:22877437-22877117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 56
               

               
Conread position:
               
158-505
               

               
Cow position:
               
chr6:9375653-9375304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr6:62925274-62924867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
158-572
               

               
Cow position:
               
chr6:47305046-47305486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 398
               

               
Conread position:
               
158-620
               

               
Cow position:
               
chr6:6343146-6343625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
164-377
               

               
Cow position:
               
chr6:3936272-3936485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
164-470
               

               
Cow position:
               
chr6:46205743-46206054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 69
               

               
Conread position:
               
164-472
               

               
Cow position:
               
chr6:5958290-5957985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
164-538
               

               
Cow position:
               
chr6:10332381-10331988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 202
               

               
Conread position:
               
164-588
               

               
Cow position:
               
chr6:6060832-6060410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
164-588
               

               
Cow position:
               
chr6:33302136-33302558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
164-590
               

               
Cow position:
               
chr6:52478717-52478245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
164-590
               

               
Cow position:
               
chr6:54867237-54867682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
164-591
               

               
Cow position:
               
chr6:36195939-36196376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
164-591
               

               
Cow position:
               
chr6:39358613-39358176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
164-642
               

               
Cow position:
               
chr6:7131146-7130667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
164-644
               

               
Cow position:
               
chr6:456906-457394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
164-649
               

               
Cow position:
               
chr6:8209860-8209374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
164-714
               

               
Cow position:
               
chr6:18049300-18048731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
166-393
               

               
Cow position:
               
chr6:10649291-10649063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
166-490
               

               
Cow position:
               
chr6:50120058-50119720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
166-517
               

               
Cow position:
               
chr6:8804816-8804439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
166-587
               

               
Cow position:
               
chr6:18447781-18447356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
167-398
               

               
Cow position:
               
chr6:19508702-19508474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
167-427
               

               
Cow position:
               
chr6:40264469-40264203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
167-500
               

               
Cow position:
               
chr6:642848-642498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
167-578
               

               
Cow position:
               
chr6:11169437-11169855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 44
               

               
Conread position:
               
169-591
               

               
Cow position:
               
chr6:44078247-44078680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
170-458
               

               
Cow position:
               
chr6:54647790-54647492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
170-512
               

               
Cow position:
               
chr6:606994-607350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
170-569
               

               
Cow position:
               
chr6:31525784-31526190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
11, 42
               

               
Conread position:
               
170-578
               

               
Cow position:
               
chr6:27851971-27851555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 39
               

               
Conread position:
               
170-590
               

               
Cow position:
               
chr6:28147983-28148420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
9, 51
               

               
Conread position:
               
170-661
               

               
Cow position:
               
chr6:35103592-35103094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
170-667
               

               
Cow position:
               
chr6:51674642-51675153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 187
               

               
Conread position:
               
171-307
               

               
Cow position:
               
chr6:33509309-33509448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
171-494
               

               
Cow position:
               
chr6:28148580-28148901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
171-557
               

               
Cow position:
               
chr6:53401105-53401487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
171-579
               

               
Cow position:
               
chr6:28482749-28483170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
171-581
               

               
Cow position:
               
chr6:42961633-42961207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
134, 53
               

               
Conread position:
               
171-590
               

               
Cow position:
               
chr6:51835134-51835561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
171-605
               

               
Cow position:
               
chr6:6264380-6264835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
171-691
               

               
Cow position:
               
chr6:47339622-47339082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
174-397
               

               
Cow position:
               
chr6:46666843-46667077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
101, 29
               

               
Conread position:
               
174-468
               

               
Cow position:
               
chr6:23986999-23986706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
174-494
               

               
Cow position:
               
chr6:36928390-36928727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
75, 38
               

               
Conread position:
               
174-590
               

               
Cow position:
               
chr6:6067951-6067536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
175-477
               

               
Cow position:
               
chr6:9733093-9732792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
175-517
               

               
Cow position:
               
chr6:11192714-11192372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 41
               

               
Conread position:
               
175-564
               

               
Cow position:
               
chr6:63272879-63272473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
75, 35
               

               
Conread position:
               
175-578
               

               
Cow position:
               
chr6:64436604-64436179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 361
               

               
Conread position:
               
175-590
               

               
Cow position:
               
chr6:8562454-8562886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 52
               

               
Conread position:
               
175-591
               

               
Cow position:
               
chr6:46465566-46465987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 41
               

               
Conread position:
               
175-595
               

               
Cow position:
               
chr6:29210240-29210659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
144, 41
               

               
Conread position:
               
176-625
               

               
Cow position:
               
chr6:58073782-58074243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
51, 38
               

               
Conread position:
               
177-370
               

               
Cow position:
               
chr6:60467768-60467961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
177-374
               

               
Cow position:
               
chr6:51071444-51071655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
177-380
               

               
Cow position:
               
chr6:55608066-55607865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
177-385
               

               
Cow position:
               
chr6:35769742-35769530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
140, 39
               

               
Conread position:
               
177-394
               

               
Cow position:
               
chr6:12623211-12623432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
177-417
               

               
Cow position:
               
chr6:25784053-25784287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
141, 50
               

               
Conread position:
               
177-424
               

               
Cow position:
               
chr6:57411386-57411627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 28
               

               
Conread position:
               
177-427
               

               
Cow position:
               
chr6:2012759-2013016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
177-427
               

               
Cow position:
               
chr6:24327395-24327144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
177-427
               

               
Cow position:
               
chr6:32916180-32915927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 39
               

               
Conread position:
               
177-432
               

               
Cow position:
               
chr6:12927863-12928121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
177-433
               

               
Cow position:
               
chr6:32210888-32210625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
177-446
               

               
Cow position:
               
chr6:47625219-47624947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
177-459
               

               
Cow position:
               
chr6:69500070-69500353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
77, 39
               

               
Conread position:
               
177-472
               

               
Cow position:
               
chr6:67544552-67544253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
141, 43
               

               
Conread position:
               
177-473
               

               
Cow position:
               
chr6:53345536-53345834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
177-479
               

               
Cow position:
               
chr6:13741438-13741752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
177-484
               

               
Cow position:
               
chr6:47540266-47540587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
177-489
               

               
Cow position:
               
chr6:16410936-16411252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
177-489
               

               
Cow position:
               
chr6:54293851-54294163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
132, 50
               

               
Conread position:
               
177-490
               

               
Cow position:
               
chr6:47150519-47150854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
141, 60
               

               
Conread position:
               
177-492
               

               
Cow position:
               
chr6:34075767-34076093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
135, 27
               

               
Conread position:
               
177-494
               

               
Cow position:
               
chr6:38233724-38234025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
177-498
               

               
Cow position:
               
chr6:24652440-24652124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
77, 33
               

               
Conread position:
               
177-501
               

               
Cow position:
               
chr6:44372203-44371872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 38
               

               
Conread position:
               
177-501
               

               
Cow position:
               
chr6:50446019-50445695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
177-503
               

               
Cow position:
               
chr6:67044710-67045027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
177-511
               

               
Cow position:
               
chr6:18961782-18961431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
177-524
               

               
Cow position:
               
chr6:16518116-16517779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
136, 32
               

               
Conread position:
               
177-526
               

               
Cow position:
               
chr6:6642848-6642507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
177-529
               

               
Cow position:
               
chr6:59597397-59597752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
177-531
               

               
Cow position:
               
chr6:48567602-48567246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
128, 50
               

               
Conread position:
               
177-531
               

               
Cow position:
               
chr6:53178380-53178735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
177-538
               

               
Cow position:
               
chr6:1770455-1770085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
177-538
               

               
Cow position:
               
chr6:14696632-14696252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
177-538
               

               
Cow position:
               
chr6:50746717-50747110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
177-540
               

               
Cow position:
               
chr6:35471786-35471395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
177-542
               

               
Cow position:
               
chr6:2607354-2607723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
127, 22
               

               
Conread position:
               
177-542
               

               
Cow position:
               
chr6:34549149-34549518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
141, 44
               

               
Conread position:
               
177-559
               

               
Cow position:
               
chr6:28811255-28810865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
39, 51
               

               
Conread position:
               
177-569
               

               
Cow position:
               
chr6:4864798-4864403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 47
               

               
Conread position:
               
177-570
               

               
Cow position:
               
chr6:18987957-18988354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
177-570
               

               
Cow position:
               
chr6:49422042-49421647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
177-571
               

               
Cow position:
               
chr6:56842900-56843300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
177-574
               

               
Cow position:
               
chr6:12337725-12338148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
177-576
               

               
Cow position:
               
chr6:67968890-67968461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
177-578
               

               
Cow position:
               
chr6:16706750-16707165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
177-578
               

               
Cow position:
               
chr6:17414713-17414292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
177-580
               

               
Cow position:
               
chr6:12551008-12551427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
177-580
               

               
Cow position:
               
chr6:38218404-38218821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
177-581
               

               
Cow position:
               
chr6:12500597-12501005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
177-581
               

               
Cow position:
               
chr6:42565426-42565843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 33
               

               
Conread position:
               
177-581
               

               
Cow position:
               
chr6:49398876-49398463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
130, 50
               

               
Conread position:
               
177-583
               

               
Cow position:
               
chr6:19681776-19681367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 41
               

               
Conread position:
               
177-583
               

               
Cow position:
               
chr6:24004287-24004693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 49
               

               
Conread position:
               
177-583
               

               
Cow position:
               
chr6:63047316-63047750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
177-585
               

               
Cow position:
               
chr6:55474990-55475415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 33
               

               
Conread position:
               
177-587
               

               
Cow position:
               
chr6:16700002-16700413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
128, 34
               

               
Conread position:
               
177-587
               

               
Cow position:
               
chr6:25407666-25407230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 275
               

               
Conread position:
               
177-587
               

               
Cow position:
               
chr6:35842401-35842819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 43
               

               
Conread position:
               
177-589
               

               
Cow position:
               
chr6:15938124-15937691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
177-590
               

               
Cow position:
               
chr6:2546983-2547421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
177-590
               

               
Cow position:
               
chr6:7801625-7801233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
76, 39
               

               
Conread position:
               
177-590
               

               
Cow position:
               
chr6:13367040-13367450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 34
               

               
Conread position:
               
177-590
               

               
Cow position:
               
chr6:21587681-21587266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
177-590
               

               
Cow position:
               
chr6:23695738-23696165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
177-590
               

               
Cow position:
               
chr6:40031934-40032355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
177-590
               

               
Cow position:
               
chr6:46557798-46558222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
132, 39
               

               
Conread position:
               
177-590
               

               
Cow position:
               
chr6:54365583-54365167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 32
               

               
Conread position:
               
177-590
               

               
Cow position:
               
chr6:61515457-61515028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
177-591
               

               
Cow position:
               
chr6:611307-611710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
132, 27
               

               
Conread position:
               
177-591
               

               
Cow position:
               
chr6:15305329-15305736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 25
               

               
Conread position:
               
177-591
               

               
Cow position:
               
chr6:21004396-21004841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
59, 50
               

               
Conread position:
               
177-591
               

               
Cow position:
               
chr6:32867466-32867053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
177-591
               

               
Cow position:
               
chr6:64431682-64432104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
177-591
               

               
Cow position:
               
chr6:65870764-65871202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
177-593
               

               
Cow position:
               
chr6:21534799-21535206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
177-608
               

               
Cow position:
               
chr6:24781823-24781378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 39
               

               
Conread position:
               
177-617
               

               
Cow position:
               
chr6:31635947-31635491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
115, 32
               

               
Conread position:
               
177-621
               

               
Cow position:
               
chr6:36470825-36470368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
177-631
               

               
Cow position:
               
chr6:28476918-28477376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
81, 44
               

               
Conread position:
               
177-632
               

               
Cow position:
               
chr6:26728786-26728330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 50
               

               
Conread position:
               
177-671
               

               
Cow position:
               
chr6:60057925-60057411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
177-671
               

               
Cow position:
               
chr6:67214482-67214999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
178-506
               

               
Cow position:
               
chr6:49410943-49410619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
126, 43
               

               
Conread position:
               
178-590
               

               
Cow position:
               
chr6:5095813-5095377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 42
               

               
Conread position:
               
178-590
               

               
Cow position:
               
chr6:16765651-16765236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
59, 31
               

               
Conread position:
               
179-526
               

               
Cow position:
               
chr6:48169687-48170039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
126, 37
               

               
Conread position:
               
179-578
               

               
Cow position:
               
chr6:19427192-19427603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
181-472
               

               
Cow position:
               
chr6:2423493-2423788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
182-353
               

               
Cow position:
               
chr6:16397437-16397266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 45
               

               
Conread position:
               
182-473
               

               
Cow position:
               
chr6:20231080-20230782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
182-486
               

               
Cow position:
               
chr6:12629763-12630079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
182-505
               

               
Cow position:
               
chr6:52248392-52248055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 45
               

               
Conread position:
               
182-538
               

               
Cow position:
               
chr6:48281740-48282105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
67, 34
               

               
Conread position:
               
182-538
               

               
Cow position:
               
chr6:60473879-60474243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
122, 64
               

               
Conread position:
               
182-570
               

               
Cow position:
               
chr6:24031120-24031521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
182-570
               

               
Cow position:
               
chr6:37634535-37634940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
136, 45
               

               
Conread position:
               
182-573
               

               
Cow position:
               
chr6:32121656-32122056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
182-578
               

               
Cow position:
               
chr6:8637020-8637434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
182-578
               

               
Cow position:
               
chr6:13688066-13687661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
182-578
               

               
Cow position:
               
chr6:47519796-47520206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
127, 28
               

               
Conread position:
               
182-590
               

               
Cow position:
               
chr6:67187441-67187849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 7
               

               
Conread position:
               
182-591
               

               
Cow position:
               
chr6:35990476-35990068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 29
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr6:17068074-17067865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
183-536
               

               
Cow position:
               
chr6:66363498-66363124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
183-575
               

               
Cow position:
               
chr6:34196402-34195999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
183-589
               

               
Cow position:
               
chr6:53933094-53932684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
183-590
               

               
Cow position:
               
chr6:10176552-10176137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
184-448
               

               
Cow position:
               
chr6:29077475-29077746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
184-587
               

               
Cow position:
               
chr6:35181506-35181095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
184-591
               

               
Cow position:
               
chr6:53460835-53460401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
184-608
               

               
Cow position:
               
chr6:10612609-10613024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
185-472
               

               
Cow position:
               
chr6:16737769-16738062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
133, 42
               

               
Conread position:
               
185-472
               

               
Cow position:
               
chr6:62479417-62479117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
132, 42
               

               
Conread position:
               
188-374
               

               
Cow position:
               
chr6:3719257-3719061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
188-479
               

               
Cow position:
               
chr6:53710867-53711164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 33
               

               
Conread position:
               
188-525
               

               
Cow position:
               
chr6:46292578-46292248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
121, 18
               

               
Conread position:
               
188-540
               

               
Cow position:
               
chr6:65676008-65676358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
130, 39
               

               
Conread position:
               
188-589
               

               
Cow position:
               
chr6:38771041-38771444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
188-590
               

               
Cow position:
               
chr6:40774602-40774167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
188-591
               

               
Cow position:
               
chr6:31535821-31535402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
69, 33
               

               
Conread position:
               
188-591
               

               
Cow position:
               
chr6:40713748-40713344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
189-591
               

               
Cow position:
               
chr6:15242588-15243002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
189-591
               

               
Cow position:
               
chr6:54132571-54132978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
48, 13
               

               
Conread position:
               
190-381
               

               
Cow position:
               
chr6:12845070-12845260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
64, 26
               

               
Conread position:
               
190-591
               

               
Cow position:
               
chr6:56849771-56850186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
190-608
               

               
Cow position:
               
chr6:67950706-67951131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 13
               

               
Conread position:
               
191-585
               

               
Cow position:
               
chr6:17090342-17090759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 288
               

               
Conread position:
               
192-531
               

               
Cow position:
               
chr6:130419-130057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
192-623
               

               
Cow position:
               
chr6:1002479-1002068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
283, 49
               

               
Conread position:
               
193-550
               

               
Cow position:
               
chr6:10695620-10695985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
194-627
               

               
Cow position:
               
chr6:54991235-54990801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 29
               

               
Conread position:
               
197-590
               

               
Cow position:
               
chr6:50090392-50090807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
26, 203
               

               
Conread position:
               
200-640
               

               
Cow position:
               
chr6:13040215-13040646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
203-590
               

               
Cow position:
               
chr6:10400131-10399750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 15
               

               
Conread position:
               
203-591
               

               
Cow position:
               
chr6:45690833-45690444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
204-427
               

               
Cow position:
               
chr6:39994700-39994464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
204-505
               

               
Cow position:
               
chr6:21542080-21542400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
204-586
               

               
Cow position:
               
chr6:21110727-21111112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
206-603
               

               
Cow position:
               
chr6:14949719-14949301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
207-613
               

               
Cow position:
               
chr6:9026279-9026708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 317
               

               
Conread position:
               
209-572
               

               
Cow position:
               
chr6:56376584-56376202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 117
               

               
Conread position:
               
210-395
               

               
Cow position:
               
chr6:59302059-59301857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
210-468
               

               
Cow position:
               
chr6:25773617-25773346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
210-570
               

               
Cow position:
               
chr6:60350534-60350147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
210-577
               

               
Cow position:
               
chr6:66874129-66874501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
210-581
               

               
Cow position:
               
chr6:16103437-16103042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
11, 377
               

               
Conread position:
               
210-590
               

               
Cow position:
               
chr6:6063513-6063130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
44, 103
               

               
Conread position:
               
210-603
               

               
Cow position:
               
chr6:68049201-68049593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 204
               

               
Conread position:
               
211-494
               

               
Cow position:
               
chr6:7824529-7824832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
212-425
               

               
Cow position:
               
chr6:66453567-66453794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
212-504
               

               
Cow position:
               
chr6:9322928-9323220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
213-552
               

               
Cow position:
               
chr6:23248195-23247839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
10, 201
               

               
Conread position:
               
213-563
               

               
Cow position:
               
chr6:38018043-38018399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
40, 151
               

               
Conread position:
               
215-538
               

               
Cow position:
               
chr6:54600140-54600461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
216-578
               

               
Cow position:
               
chr6:9008839-9008459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
220-405
               

               
Cow position:
               
chr6:51398577-51398772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
34, 189
               

               
Conread position:
               
220-467
               

               
Cow position:
               
chr6:54885137-54884865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
220-479
               

               
Cow position:
               
chr6:45160515-45160249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
33, 220
               

               
Conread position:
               
220-494
               

               
Cow position:
               
chr6:11637969-11637690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 211
               

               
Conread position:
               
220-552
               

               
Cow position:
               
chr6:54369123-54368777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 201
               

               
Conread position:
               
220-568
               

               
Cow position:
               
chr6:20098188-20097816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
220-580
               

               
Cow position:
               
chr6:19401638-19402003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 161
               

               
Conread position:
               
220-590
               

               
Cow position:
               
chr6:61269106-61269477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
220-624
               

               
Cow position:
               
chr6:37148975-37149388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
220-650
               

               
Cow position:
               
chr6:5302628-5302200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
220-671
               

               
Cow position:
               
chr6:21869869-21869401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 387
               

               
Conread position:
               
221-384
               

               
Cow position:
               
chr6:60017845-60018018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
221-403
               

               
Cow position:
               
chr6:10635954-10636140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 169
               

               
Conread position:
               
221-434
               

               
Cow position:
               
chr6:56041845-56041621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 193
               

               
Conread position:
               
221-460
               

               
Cow position:
               
chr6:30826257-30826000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
221-472
               

               
Cow position:
               
chr6:52025874-52025607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
221-472
               

               
Cow position:
               
chr6:67304579-67304848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
33, 155
               

               
Conread position:
               
221-478
               

               
Cow position:
               
chr6:5462271-5462010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
29, 169
               

               
Conread position:
               
221-569
               

               
Cow position:
               
chr6:35613632-35613273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
88, 33
               

               
Conread position:
               
221-570
               

               
Cow position:
               
chr6:36202605-36202964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
37, 175
               

               
Conread position:
               
221-575
               

               
Cow position:
               
chr6:54490963-54490587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 314
               

               
Conread position:
               
221-578
               

               
Cow position:
               
chr6:31564556-31564185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
32, 145
               

               
Conread position:
               
221-578
               

               
Cow position:
               
chr6:45065229-45064864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 104
               

               
Conread position:
               
221-581
               

               
Cow position:
               
chr6:53651818-53652196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
34, 8
               

               
Conread position:
               
221-587
               

               
Cow position:
               
chr6:15301040-15300673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 190
               

               
Conread position:
               
221-590
               

               
Cow position:
               
chr6:66433725-66434116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 172
               

               
Conread position:
               
221-592
               

               
Cow position:
               
chr6:38440959-38441339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 125
               

               
Conread position:
               
221-598
               

               
Cow position:
               
chr6:44194768-44194377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 191
               

               
Conread position:
               
221-620
               

               
Cow position:
               
chr6:66532024-66531628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 89
               

               
Conread position:
               
221-638
               

               
Cow position:
               
chr6:9452992-9452549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
85, 190
               

               
Conread position:
               
222-588
               

               
Cow position:
               
chr6:7539351-7539735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 168
               

               
Conread position:
               
223-505
               

               
Cow position:
               
chr6:14850932-14850637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
29, 278
               

               
Conread position:
               
223-564
               

               
Cow position:
               
chr6:38614603-38614951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
224-488
               

               
Cow position:
               
chr6:34031448-34031721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
224-553
               

               
Cow position:
               
chr6:899504-899165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
87, 40
               

               
Conread position:
               
224-593
               

               
Cow position:
               
chr6:35435783-35436163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 123
               

               
Conread position:
               
225-510
               

               
Cow position:
               
chr6:44098866-44099171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
225-566
               

               
Cow position:
               
chr6:49002943-49002599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
225-579
               

               
Cow position:
               
chr6:4383274-4383632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 211
               

               
Conread position:
               
225-588
               

               
Cow position:
               
chr6:41375534-41375932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
225-590
               

               
Cow position:
               
chr6:6201226-6201589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 172
               

               
Conread position:
               
225-591
               

               
Cow position:
               
chr6:38853877-38853491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 173
               

               
Conread position:
               
225-591
               

               
Cow position:
               
chr6:55282508-55282128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
32, 135
               

               
Conread position:
               
226-446
               

               
Cow position:
               
chr6:15923215-15922983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
226-570
               

               
Cow position:
               
chr6:242596-242936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
227-444
               

               
Cow position:
               
chr6:30786365-30786141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
27, 146
               

               
Conread position:
               
230-590
               

               
Cow position:
               
chr6:62324776-62325154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 257
               

               
Conread position:
               
231-473
               

               
Cow position:
               
chr6:48344115-48344377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
231-580
               

               
Cow position:
               
chr6:60442206-60442562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 118
               

               
Conread position:
               
231-589
               

               
Cow position:
               
chr6:8965877-8966261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 148
               

               
Conread position:
               
231-591
               

               
Cow position:
               
chr6:5609653-5609281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
23, 165
               

               
Conread position:
               
231-650
               

               
Cow position:
               
chr6:54140601-54141023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 160
               

               
Conread position:
               
231-671
               

               
Cow position:
               
chr6:9736852-9736418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 124
               

               
Conread position:
               
232-472
               

               
Cow position:
               
chr6:24515405-24515155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
26, 180
               

               
Conread position:
               
232-590
               

               
Cow position:
               
chr6:63252130-63251759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
233-590
               

               
Cow position:
               
chr6:445104-445488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
234-673
               

               
Cow position:
               
chr6:1886869-1886428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
74, 225
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr6:47988981-47989238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
235-551
               

               
Cow position:
               
chr6:28084221-28083896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
237-575
               

               
Cow position:
               
chr6:32269074-32268738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
242-590
               

               
Cow position:
               
chr6:52412655-52413024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 251
               

               
Conread position:
               
242-608
               

               
Cow position:
               
chr6:528478-528099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
243-631
               

               
Cow position:
               
chr6:53519819-53519415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 5
               

               
Conread position:
               
245-494
               

               
Cow position:
               
chr6:60239588-60239329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
7, 173
               

               
Conread position:
               
245-575
               

               
Cow position:
               
chr6:8788232-8787887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 185
               

               
Conread position:
               
246-508
               

               
Cow position:
               
chr6:37467733-37467462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 125
               

               
Conread position:
               
246-578
               

               
Cow position:
               
chr6:65871703-65872041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 134
               

               
Conread position:
               
246-618
               

               
Cow position:
               
chr6:14958543-14958147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
246-619
               

               
Cow position:
               
chr6:42566674-42567048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 76
               

               
Conread position:
               
247-591
               

               
Cow position:
               
chr6:1703621-1703960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
58, 147
               

               
Conread position:
               
248-387
               

               
Cow position:
               
chr6:21812538-21812685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
248-444
               

               
Cow position:
               
chr6:33276847-33277057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
248-486
               

               
Cow position:
               
chr6:53731329-53731582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
248-491
               

               
Cow position:
               
chr6:37603331-37603564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 142
               

               
Conread position:
               
248-494
               

               
Cow position:
               
chr6:49685393-49685648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 237
               

               
Conread position:
               
248-504
               

               
Cow position:
               
chr6:48187773-48187507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
248-511
               

               
Cow position:
               
chr6:48425513-48425241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 187
               

               
Conread position:
               
248-530
               

               
Cow position:
               
chr6:20157132-20157438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chr6:65702593-65702298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 147
               

               
Conread position:
               
248-560
               

               
Cow position:
               
chr6:28318217-28318531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 93
               

               
Conread position:
               
248-569
               

               
Cow position:
               
chr6:51893697-51893357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
56, 330
               

               
Conread position:
               
248-570
               

               
Cow position:
               
chr6:7190311-7189974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 106
               

               
Conread position:
               
248-570
               

               
Cow position:
               
chr6:21231344-21231670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 82
               

               
Conread position:
               
248-578
               

               
Cow position:
               
chr6:12652014-12652355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 184
               

               
Conread position:
               
248-578
               

               
Cow position:
               
chr6:21737074-21736740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 117
               

               
Conread position:
               
248-578
               

               
Cow position:
               
chr6:38641306-38641645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 261
               

               
Conread position:
               
248-578
               

               
Cow position:
               
chr6:63299218-63298878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
70, 87
               

               
Conread position:
               
248-581
               

               
Cow position:
               
chr6:28977221-28976884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 129
               

               
Conread position:
               
248-585
               

               
Cow position:
               
chr6:3545512-3545839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
149, 68
               

               
Conread position:
               
248-588
               

               
Cow position:
               
chr6:26915138-26915492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
248-589
               

               
Cow position:
               
chr6:21062075-21061723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 67
               

               
Conread position:
               
248-590
               

               
Cow position:
               
chr6:12092176-12091827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
248-590
               

               
Cow position:
               
chr6:19695614-19695971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 124
               

               
Conread position:
               
248-590
               

               
Cow position:
               
chr6:24110112-24110446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
136, 70
               

               
Conread position:
               
248-591
               

               
Cow position:
               
chr6:16191475-16191837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
248-591
               

               
Cow position:
               
chr6:17997507-17997153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 208
               

               
Conread position:
               
248-591
               

               
Cow position:
               
chr6:29239752-29240105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 311
               

               
Conread position:
               
248-592
               

               
Cow position:
               
chr6:21456882-21456503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
248-592
               

               
Cow position:
               
chr6:53024990-53024637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
45, 160
               

               
Conread position:
               
248-593
               

               
Cow position:
               
chr6:63720007-63720367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
57, 342
               

               
Conread position:
               
248-608
               

               
Cow position:
               
chr6:57405316-57404963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
248-617
               

               
Cow position:
               
chr6:59069820-59069425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
248-621
               

               
Cow position:
               
chr6:7989605-7989221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
248-621
               

               
Cow position:
               
chr6:66131116-66131499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 332
               

               
Conread position:
               
248-625
               

               
Cow position:
               
chr6:54864859-54864460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 232
               

               
Conread position:
               
248-650
               

               
Cow position:
               
chr6:6098474-6098047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 375
               

               
Conread position:
               
248-655
               

               
Cow position:
               
chr6:65259659-65259263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 43
               

               
Conread position:
               
248-671
               

               
Cow position:
               
chr6:37199737-37199289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 285
               

               
Conread position:
               
248-671
               

               
Cow position:
               
chr6:38207688-38207259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 186
               

               
Conread position:
               
248-676
               

               
Cow position:
               
chr6:29484899-29485325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
250-590
               

               
Cow position:
               
chr6:24468581-24468231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
40, 190
               

               
Conread position:
               
250-671
               

               
Cow position:
               
chr6:6400758-6401192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
251-570
               

               
Cow position:
               
chr6:16423510-16423846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
58, 295
               

               
Conread position:
               
251-576
               

               
Cow position:
               
chr6:33918040-33917688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
44, 311
               

               
Conread position:
               
251-589
               

               
Cow position:
               
chr6:65903806-65903461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
251-626
               

               
Cow position:
               
chr6:9751229-9750858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 150
               

               
Conread position:
               
251-628
               

               
Cow position:
               
chr6:23532474-23532857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
54, 154
               

               
Conread position:
               
252-590
               

               
Cow position:
               
chr6:50577332-50577686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
46, 223
               

               
Conread position:
               
252-618
               

               
Cow position:
               
chr6:47799110-47799485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
253-590
               

               
Cow position:
               
chr6:41733440-41733797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
44, 174
               

               
Conread position:
               
255-581
               

               
Cow position:
               
chr6:46865778-46865436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
45, 188
               

               
Conread position:
               
256-553
               

               
Cow position:
               
chr6:25008530-25008846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 167
               

               
Conread position:
               
257-588
               

               
Cow position:
               
chr6:12668921-12669257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 182
               

               
Conread position:
               
258-567
               

               
Cow position:
               
chr6:26910051-26909731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
46, 79
               

               
Conread position:
               
258-593
               

               
Cow position:
               
chr6:47574723-47575074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
258-649
               

               
Cow position:
               
chr6:5114228-5113846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 8
               

               
Conread position:
               
259-538
               

               
Cow position:
               
chr6:32518054-32517767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
59, 155
               

               
Conread position:
               
260-650
               

               
Cow position:
               
chr6:37783234-37783628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 137
               

               
Conread position:
               
261-468
               

               
Cow position:
               
chr6:18968952-18968741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
261-622
               

               
Cow position:
               
chr6:52901062-52901436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
264-578
               

               
Cow position:
               
chr6:19012893-19013216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
265-566
               

               
Cow position:
               
chr6:47640613-47640291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
265-581
               

               
Cow position:
               
chr6:11246590-11246922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 6
               

               
Conread position:
               
265-590
               

               
Cow position:
               
chr6:8125157-8125491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
265-590
               

               
Cow position:
               
chr6:59104433-59104767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
265-593
               

               
Cow position:
               
chr6:59798493-59798818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
266-650
               

               
Cow position:
               
chr6:35993403-35993810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 310
               

               
Conread position:
               
267-590
               

               
Cow position:
               
chr6:65264708-65264381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 186
               

               
Conread position:
               
270-477
               

               
Cow position:
               
chr6:54287910-54288120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
270-590
               

               
Cow position:
               
chr6:27888180-27888515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
270-590
               

               
Cow position:
               
chr6:47355654-47355987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
40, 136
               

               
Conread position:
               
270-591
               

               
Cow position:
               
chr6:39093574-39093916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
48, 70
               

               
Conread position:
               
272-591
               

               
Cow position:
               
chr6:19446092-19446416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 118
               

               
Conread position:
               
273-617
               

               
Cow position:
               
chr6:16764809-16764455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
276-494
               

               
Cow position:
               
chr6:44984162-44984396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
277-514
               

               
Cow position:
               
chr6:59108779-59109034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
277-577
               

               
Cow position:
               
chr6:26450154-26450465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
277-590
               

               
Cow position:
               
chr6:14914402-14914071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
278-550
               

               
Cow position:
               
chr6:12543095-12542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
280-590
               

               
Cow position:
               
chr6:17313582-17313900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
280-591
               

               
Cow position:
               
chr6:57546376-57546063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
281-578
               

               
Cow position:
               
chr6:48112045-48112349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
286-494
               

               
Cow position:
               
chr6:57298866-57299081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
289-591
               

               
Cow position:
               
chr6:23402131-23401826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 31
               

               
Conread position:
               
292-648
               

               
Cow position:
               
chr6:46283146-46282792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
299-649
               

               
Cow position:
               
chr6:61168639-61168966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
300-577
               

               
Cow position:
               
chr6:48803768-48803487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
303-489
               

               
Cow position:
               
chr6:40834601-40834407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
303-540
               

               
Cow position:
               
chr6:54036263-54036028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
303-552
               

               
Cow position:
               
chr6:61608379-61608639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
303-580
               

               
Cow position:
               
chr6:19996493-19996767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
303-590
               

               
Cow position:
               
chr6:16316178-16316481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 29
               

               
Conread position:
               
303-590
               

               
Cow position:
               
chr6:31847348-31847076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
303-590
               

               
Cow position:
               
chr6:38609840-38610142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
303-590
               

               
Cow position:
               
chr6:67323188-67323474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
303-591
               

               
Cow position:
               
chr6:15243124-15243421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
303-591
               

               
Cow position:
               
chr6:19264627-19264333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 131
               

               
Conread position:
               
303-591
               

               
Cow position:
               
chr6:32287512-32287802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
303-591
               

               
Cow position:
               
chr6:38640099-38640399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
303-591
               

               
Cow position:
               
chr6:53841631-53841340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
303-592
               

               
Cow position:
               
chr6:60118018-60118314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
55, 126
               

               
Conread position:
               
304-566
               

               
Cow position:
               
chr6:20206149-20206416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
304-581
               

               
Cow position:
               
chr6:57571346-57571635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
304-620
               

               
Cow position:
               
chr6:582398-582074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
305-592
               

               
Cow position:
               
chr6:60739889-60740181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
305-601
               

               
Cow position:
               
chr6:9219147-9219442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
312-494
               

               
Cow position:
               
chr6:5413697-5413888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
320-487
               

               
Cow position:
               
chr6:19351267-19351099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 144
               

               
Conread position:
               
320-578
               

               
Cow position:
               
chr6:12845266-12845532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
45, 134
               

               
Conread position:
               
320-580
               

               
Cow position:
               
chr6:36189584-36189852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
320-580
               

               
Cow position:
               
chr6:58597617-58597350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 90
               

               
Conread position:
               
320-590
               

               
Cow position:
               
chr6:43135057-43134774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
320-606
               

               
Cow position:
               
chr6:10225752-10225477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
64, 100
               

               
Conread position:
               
321-570
               

               
Cow position:
               
chr6:6965499-6965255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
126, 19
               

               
Conread position:
               
321-587
               

               
Cow position:
               
chr6:10039609-10039885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
321-588
               

               
Cow position:
               
chr6:21234932-21235206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 91
               

               
Conread position:
               
321-591
               

               
Cow position:
               
chr6:15447316-15447032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
321-610
               

               
Cow position:
               
chr6:4692092-4691792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
42, 237
               

               
Conread position:
               
323-593
               

               
Cow position:
               
chr6:59603317-59603042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
323-623
               

               
Cow position:
               
chr6:30973942-30974236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
327-578
               

               
Cow position:
               
chr6:54573137-54573412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
328-641
               

               
Cow position:
               
chr6:59718691-59719004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
60, 272
               

               
Conread position:
               
329-570
               

               
Cow position:
               
chr6:7119714-7119474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
59, 46
               

               
Conread position:
               
329-576
               

               
Cow position:
               
chr6:60667314-60667561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
28, 112
               

               
Conread position:
               
330-591
               

               
Cow position:
               
chr6:58370650-58370916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
33, 187
               

               
Conread position:
               
331-575
               

               
Cow position:
               
chr6:20196395-20196153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
334-590
               

               
Cow position:
               
chr6:3592302-3592562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
29, 169
               

               
Conread position:
               
344-613
               

               
Cow position:
               
chr6:51968978-51969262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
44, 247
               

               
Conread position:
               
345-575
               

               
Cow position:
               
chr6:37462934-37463172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
346-578
               

               
Cow position:
               
chr6:143455-143222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
347-575
               

               
Cow position:
               
chr6:44867627-44867393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
347-576
               

               
Cow position:
               
chr6:6673016-6673258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
9, 106
               

               
Conread position:
               
347-581
               

               
Cow position:
               
chr6:1429553-1429795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
347-581
               

               
Cow position:
               
chr6:66375416-66375177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 86
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr6:9719010-9718749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 143
               

               
Conread position:
               
347-604
               

               
Cow position:
               
chr6:17794842-17794586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
349-591
               

               
Cow position:
               
chr6:13565000-13565252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 210
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr6:19045541-19045787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 101
               

               
Conread position:
               
352-591
               

               
Cow position:
               
chr6:22525250-22525495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
7, 100
               

               
Conread position:
               
354-612
               

               
Cow position:
               
chr6:2623703-2623961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
34, 109
               

               
Conread position:
               
354-621
               

               
Cow position:
               
chr6:23466108-23465840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
355-580
               

               
Cow position:
               
chr6:58608517-58608289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
355-587
               

               
Cow position:
               
chr6:4468690-4468925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
355-588
               

               
Cow position:
               
chr6:24536618-24536368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
355-588
               

               
Cow position:
               
chr6:59301862-59301627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
120, 57
               

               
Conread position:
               
355-590
               

               
Cow position:
               
chr6:16288130-16287895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
355-590
               

               
Cow position:
               
chr6:21514691-21514443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
355-590
               

               
Cow position:
               
chr6:33509712-33509951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
355-650
               

               
Cow position:
               
chr6:67456641-67456941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
33, 244
               

               
Conread position:
               
355-671
               

               
Cow position:
               
chr6:8599927-8600232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
357-588
               

               
Cow position:
               
chr6:37395483-37395237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
358-613
               

               
Cow position:
               
chr6:36284167-36284428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 198
               

               
Conread position:
               
359-651
               

               
Cow position:
               
chr6:10224132-10224427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
116, 25
               

               
Conread position:
               
362-601
               

               
Cow position:
               
chr6:17068720-17068469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
363-578
               

               
Cow position:
               
chr6:33929620-33929394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
363-590
               

               
Cow position:
               
chr6:5330345-5330576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
363-650
               

               
Cow position:
               
chr6:60516758-60517040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
48, 224
               

               
Conread position:
               
364-566
               

               
Cow position:
               
chr6:61142633-61142421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
365-581
               

               
Cow position:
               
chr6:11830127-11830343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
365-613
               

               
Cow position:
               
chr6:9302784-9302533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
367-590
               

               
Cow position:
               
chr6:67281831-67282059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
369-721
               

               
Cow position:
               
chr6:35896404-35896053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
19, 51
               

               
Conread position:
               
373-582
               

               
Cow position:
               
chr6:68652411-68652194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
28, 5
               

               
Conread position:
               
374-590
               

               
Cow position:
               
chr6:51530245-51530023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
375-652
               

               
Cow position:
               
chr6:18144135-18144414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
13, 229
               

               
Conread position:
               
378-589
               

               
Cow position:
               
chr6:16352401-16352190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
384-590
               

               
Cow position:
               
chr6:56986694-56986486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
8, 66
               

               
Conread position:
               
386-591
               

               
Cow position:
               
chr6:55417573-55417362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 64
               

               
Conread position:
               
387-590
               

               
Cow position:
               
chr6:47958771-47958977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
60, 12
               

               
Conread position:
               
388-590
               

               
Cow position:
               
chr6:62437370-62437579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
388-622
               

               
Cow position:
               
chr6:51399040-51399270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
389-570
               

               
Cow position:
               
chr6:47885064-47884885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
389-581
               

               
Cow position:
               
chr6:67451415-67451215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
389-620
               

               
Cow position:
               
chr6:55535792-55535558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
10, 146
               

               
Conread position:
               
397-628
               

               
Cow position:
               
chr6:53089976-53090208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
400-570
               

               
Cow position:
               
chr6:32853156-32853332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
400-591
               

               
Cow position:
               
chr6:2584911-2585108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
400-615
               

               
Cow position:
               
chr6:19131399-19131619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
48, 206
               

               
Conread position:
               
407-577
               

               
Cow position:
               
chr6:41656067-41655890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
407-590
               

               
Cow position:
               
chr6:57089173-57089366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 184
               

               
Conread position:
               
407-591
               

               
Cow position:
               
chr6:41015000-41014813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
407-598
               

               
Cow position:
               
chr6:57287683-57287489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
407-600
               

               
Cow position:
               
chr6:12964829-12965030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
413-588
               

               
Cow position:
               
chr6:35319153-35318971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 140
               

               
Conread position:
               
416-628
               

               
Cow position:
               
chr6:60451407-60451632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-590
               

               
Cow position:
               
chr6:32453373-32453549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
57, 130
               

               
Conread position:
               
418-590
               

               
Cow position:
               
chr6:48379628-48379449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
418-651
               

               
Cow position:
               
chr6:48468987-48469214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 149
               

               
Conread position:
               
425-572
               

               
Cow position:
               
chr6:36011901-36012049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
430-591
               

               
Cow position:
               
chr6:1475345-1475510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 155
               

               
Conread position:
               
430-686
               

               
Cow position:
               
chr6:46330926-46331194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 74
               

               
Conread position:
               
432-587
               

               
Cow position:
               
chr6:21467261-21467106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
432-590
               

               
Cow position:
               
chr6:58304416-58304578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
27, 148
               

               
Conread position:
               
436-616
               

               
Cow position:
               
chr6:7568130-7568315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 143
               

               
Conread position:
               
436-645
               

               
Cow position:
               
chr6:41937266-41937050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
39, 120
               

               
Conread position:
               
437-588
               

               
Cow position:
               
chr6:67806007-67805852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
437-671
               

               
Cow position:
               
chr6:49096443-49096201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
438-581
               

               
Cow position:
               
chr6:43787902-43787755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
438-590
               

               
Cow position:
               
chr6:48435844-48435994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
438-591
               

               
Cow position:
               
chr6:54127804-54127650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
438-591
               

               
Cow position:
               
chr6:61575834-61575985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
439-591
               

               
Cow position:
               
chr6:37692761-37692915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 108
               

               
Conread position:
               
439-591
               

               
Cow position:
               
chr6:50504466-50504622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
440-590
               

               
Cow position:
               
chr6:33450959-33450811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
440-590
               

               
Cow position:
               
chr6:57079434-57079588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
445-590
               

               
Cow position:
               
chr6:23610958-23611102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 92
               

               
Conread position:
               
445-590
               

               
Cow position:
               
chr6:65535155-65535006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
445-591
               

               
Cow position:
               
chr6:66947802-66947656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
446-590
               

               
Cow position:
               
chr6:31865115-31865257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
451-618
               

               
Cow position:
               
chr6:21066862-21066691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
24, 146
               

               
Conread position:
               
453-592
               

               
Cow position:
               
chr6:30825742-30825602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
454-591
               

               
Cow position:
               
chr6:52044914-52044778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 71
               

               
Conread position:
               
456-671
               

               
Cow position:
               
chr6:36643465-36643260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
460-610
               

               
Cow position:
               
chr6:60516656-60516808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
466-590
               

               
Cow position:
               
chr6:29853028-29852901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
469-650
               

               
Cow position:
               
chr6:50882624-50882806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
13, 36
               

               
Conread position:
               
475-667
               

               
Cow position:
               
chr6:34569454-34569639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
482-640
               

               
Cow position:
               
chr6:49607446-49607601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 103
               

               
Conread position:
               
482-646
               

               
Cow position:
               
chr6:47676065-47676238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
482-650
               

               
Cow position:
               
chr6:67305123-67305290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
482-672
               

               
Cow position:
               
chr6:34498796-34498987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
167, 105
               

               
Conread position:
               
482-713
               

               
Cow position:
               
chr6:35702291-35702061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 113
               

               
Conread position:
               
484-649
               

               
Cow position:
               
chr6:139588-139416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
484-650
               

               
Cow position:
               
chr6:36516019-36516187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
484-652
               

               
Cow position:
               
chr6:53513966-53513796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 118
               

               
Conread position:
               
491-617
               

               
Cow position:
               
chr6:46997731-46997601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 114
               

               
Conread position:
               
499-590
               

               
Cow position:
               
chr6:34463514-34463423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
500-649
               

               
Cow position:
               
chr6:17194286-17194427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
501-651
               

               
Cow position:
               
chr6:38020749-38020889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
502-614
               

               
Cow position:
               
chr6:37603643-37603755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
85, 108
               

               
Conread position:
               
514-667
               

               
Cow position:
               
chr6:13327086-13326930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
135, 86
               

               
Conread position:
               
528-650
               

               
Cow position:
               
chr6:56950303-56950419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               
Show alignments to all cow chromosomes.