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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8040N05.3
        

               
Conread position:
               
1-109
               

               
Cow position:
               
chr1:80942456-80942567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chr1:63905563-63905451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr1:6961817-6961937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-121
               

               
Cow position:
               
chr1:51684710-51684838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr1:81471041-81471166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
65, 91
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr1:22448678-22448542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr1:56719220-56719341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr1:45535614-45535756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-145
               

               
Cow position:
               
chr1:82443547-82443399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr1:43340703-43340559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
60, 126
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr1:93228435-93228583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-149
               

               
Cow position:
               
chr1:100400287-100400132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr1:24235608-24235458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr1:54199473-54199318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr1:57396021-57395875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
131, 67
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chr1:1991512-1991350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr1:95654803-95654643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr1:79278538-79278373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:42398285-42398116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:102647363-102647198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:3605969-3605806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:7597159-7597332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
68, 101
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr1:90864384-90864213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:71079049-71078879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr1:46030447-46030278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
59, 69
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr1:55089144-55088972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
68, 98
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr1:68951536-68951708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 147
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr1:98310977-98311155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr1:5539365-5539192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr1:63596145-63595970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr1:71399194-71399370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:72684605-72684778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
63, 132
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr1:85596850-85597027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
65, 105
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr1:101946801-101946625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
129, 69
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr1:4374431-4374246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:73761450-73761260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
64, 99
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:89485484-89485673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:100817464-100817636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
63, 116
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:26943217-26943404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:33206962-33206784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:40482494-40482317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:43703316-43703505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:48444285-48444098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:68845574-68845394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:90640940-90641124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 133
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:92996987-92996795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
64, 46
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:648233-648422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:21508302-21508490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
63, 8
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:63138750-63138938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:72103758-72103947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:78091944-78092134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:96478606-96478797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:51531676-51531849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr1:19568758-19568951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 130
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:724646-724847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:26616166-26615967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
58, 63
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:30047685-30047496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 70
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:30189055-30189259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:30418129-30417941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:37309604-37309412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
76, 35
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:43822309-43822506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 130
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:53495377-53495568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 48
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:61543009-61542812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:64572422-64572622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:81868817-81868623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:95215272-95215083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
133, 68
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:54156823-54156628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:74956112-74955913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
65, 137
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:75141913-75142105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:92433909-92434108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 56
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:874559-874763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
64, 193
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:2976085-2975885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 91
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:11913968-11913768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 31
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:22944117-22943919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 133
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:53374340-53374537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
65, 95
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:63530483-63530667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
133, 44
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:64251143-64250943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:72286148-72285959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
133, 45
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:77133669-77133861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:100421741-100421929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
133, 59
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr1:26702298-26702094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
63, 131
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr1:49795913-49796104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 24
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr1:89835158-89835363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
66, 159
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr1:100324835-100324639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
132, 60
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr1:68862942-68863145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:89349871-89350080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
58, 191
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:93810338-93810546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:94261451-94261652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
68, 27
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr1:21577718-21577925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 58
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr1:88618505-88618714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:4032537-4032751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:6228675-6228466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:6972438-6972645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
133, 79
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:7442892-7443093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
71, 88
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:8349406-8349205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:12222695-12222488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 69
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:13548074-13547860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:16962100-16961892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:20732618-20732823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:20950630-20950832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
130, 60
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:22192673-22192888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 31
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:26895067-26894853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
65, 25
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:28176918-28177121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
76, 131
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:29474437-29474231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 33
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:31607986-31607770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:32001412-32001202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 136
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:34159746-34159955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
63, 45
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:37726506-37726300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:38278125-38277910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:39418212-39417996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 191
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:41115806-41115601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
66, 127
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:42482112-42482316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
73, 48
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:47658256-47658464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 45
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:48581040-48581247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:49825161-49824947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
64, 195
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:51417681-51417888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 103
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:52435183-52435390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:57297385-57297608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:59518829-59519033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:65318487-65318693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:70422214-70422421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
58, 94
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:71796405-71796193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:72035016-72034807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:75933181-75933385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
99, 70
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:78794316-78794114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
132, 72
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:82880553-82880763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
67, 131
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:86073504-86073715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:87072606-87072813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:87936808-87937014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
67, 174
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:88913227-88913436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 150
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:89076720-89076514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
131, 74
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:89785820-89786028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:96365574-96365777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:97231869-97232079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:100569063-100569274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:101834733-101834932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:101836955-101837159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
134, 70
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:102349845-102349633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 137
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:102756520-102756314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
131, 70
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr1:31348531-31348317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr1:53520820-53521033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
21, 193
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr1:77683266-77683470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 71
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:63434897-63434685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:84104144-84103940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
20, 58
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:100770840-100770614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
124, 69
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:6941372-6941591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
110, 70
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:6958785-6959004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
99, 60
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:15333793-15334014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
64, 138
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:55818970-55819174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
77, 33
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:66430209-66430414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
197, 27
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:81582031-81582237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:86578859-86579085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 147
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:100706042-100706250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
190, 100
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:9013448-9013658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:18936920-18936714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:54258473-54258690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:55429046-55428832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:74927793-74928008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
69, 15
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:94212143-94212348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
113, 37
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr1:3607719-3607931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
91, 69
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr1:49317587-49317373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
64, 196
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr1:100450272-100450053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
52, 163
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr1:34686099-34686303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr1:35162318-35162538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:3137838-3138043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:89510014-89509789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 49
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:89742087-89741865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
50, 71
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:100551878-100552105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr1:22823814-22824036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr1:36998104-36998316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
133, 35
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr1:43389141-43388921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 25
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr1:90904845-90904625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 72
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr1:97611744-97611526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:11729090-11729307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
128, 72
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:15547379-15547602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:20667833-20667611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:31272532-31272311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
64, 48
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:38753829-38754056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:41181754-41181975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
66, 56
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:53308479-53308260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 146
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:64302339-64302112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 136
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:68619024-68618801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 94
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:69695083-69694862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
63, 106
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:72141472-72141705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 123
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:78857412-78857195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
133, 13
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:80422189-80422404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
197, 70
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:85550169-85549946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:93528607-93528833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
55, 130
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:10778475-10778697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
128, 44
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:21460778-21461005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 116
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:43872422-43872186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
57, 160
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:72105320-72105538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
67, 100
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:86113496-86113265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 94
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:98413679-98413908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
67, 22
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:99609277-99609502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 112
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:99642457-99642234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:101822592-101822381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr1:6304954-6304735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 174
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr1:97696651-97696881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
65, 137
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:3923886-3923663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
132, 48
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:627870-628107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:98360489-98360268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 47
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr1:78697860-78697632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
60, 8
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr1:53622869-53623095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr1:45285567-45285806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
65, 20
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr1:69539606-69539831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
128, 60
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr1:46030868-46031102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 60
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr1:5579963-5580202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 139
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr1:34300641-34300408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 188
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr1:28563658-28563426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
64, 27
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr1:73756337-73756107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr1:55357376-55357149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
118, 99
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr1:68763774-68763540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 45
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr1:13413938-13414173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
64, 44
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr1:69264725-69264960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 15
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr1:79165176-79164936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
63, 206
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:79660493-79660252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:82337872-82337630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
62, 136
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr1:11226331-11226095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:24778077-24777839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
195, 43
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr1:52956162-52956401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
64, 137
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:25734777-25735020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
58, 188
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:72813523-72813768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
66, 97
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:86062077-86061832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
42, 122
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:86110822-86110593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr1:97938878-97939113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
133, 60
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr1:76470564-76470802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
66, 102
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr1:48730916-48730668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:33997009-33996762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
134, 48
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:45670547-45670790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:42545877-42545614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr1:21835854-21836095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
202, 33
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:24445719-24445457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
57, 131
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:65909436-65909686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
132, 65
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:3790157-3789889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
67, 104
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:47233570-47233299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 47
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr1:23512746-23512401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 29
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:77880827-77880445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 48
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:81613298-81613694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
66, 238
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr1:76436399-76436771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
2-121
               

               
Cow position:
               
chr1:3243848-3243967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
65, 58
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr1:92926643-92926790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
137, 57
               

               
Conread position:
               
2-166
               

               
Cow position:
               
chr1:4402054-4402222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chr1:6788376-6788196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chr1:70026434-70026254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr1:46783229-46783405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
66, 43
               

               
Conread position:
               
2-185
               

               
Cow position:
               
chr1:55146712-55146894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
129, 69
               

               
Conread position:
               
2-194
               

               
Cow position:
               
chr1:9534082-9534267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
129, 68
               

               
Conread position:
               
2-194
               

               
Cow position:
               
chr1:96964230-96964421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 47
               

               
Conread position:
               
2-196
               

               
Cow position:
               
chr1:56477497-56477699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
2-199
               

               
Cow position:
               
chr1:14309125-14308923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 192
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr1:53327838-53327626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr1:67114810-67115011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
2-206
               

               
Cow position:
               
chr1:31934422-31934623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
130, 59
               

               
Conread position:
               
2-206
               

               
Cow position:
               
chr1:95557947-95558155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr1:7748130-7748332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
139, 57
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr1:7752296-7752498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
139, 57
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr1:12464756-12464547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 187
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr1:24406984-24406778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
128, 58
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr1:38418942-38419142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
61, 14
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr1:71350813-71350607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr1:73960615-73960817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 154
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr1:78809790-78809995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
131, 69
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chr1:42555173-42555384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 191
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr1:96472355-96472552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
196, 59
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr1:39225017-39224803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr1:54478234-54478452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chr1:4291070-4291290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
64, 138
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chr1:75250022-75250234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr1:65028441-65028658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
69, 47
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr1:71253643-71253431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
61, 131
               

               
Conread position:
               
2-218
               

               
Cow position:
               
chr1:43311866-43311641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
63, 42
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr1:20104178-20104398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 47
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr1:72068929-72068703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr1:56225376-56225602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr1:67919057-67919267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
133, 11
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr1:70538517-70538745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr1:72011899-72011683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
127, 62
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr1:91066243-91066020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
64, 149
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr1:89381184-89381407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
77, 52
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr1:17196720-17196486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 46
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr1:53458606-53458849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 133
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr1:64804192-64803948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
69, 39
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr1:74084285-74084039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
57, 139
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr1:44769203-44768952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr1:18780425-18780164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chr1:90868531-90868276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
58, 187
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr1:34771594-34771332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
68, 39
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr1:36932067-36932337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
132, 108
               

               
Conread position:
               
3-132
               

               
Cow position:
               
chr1:57635372-57635504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr1:9470487-9470323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr1:71666022-71665848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr1:90976174-90975992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
130, 58
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr1:95178865-95179050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr1:73584500-73584313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr1:43855212-43855402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 87
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr1:52052810-52052610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr1:81355798-81355593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr1:45288961-45288757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-207
               

               
Cow position:
               
chr1:484555-484348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
61, 46
               

               
Conread position:
               
3-207
               

               
Cow position:
               
chr1:3352783-3352581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
3-207
               

               
Cow position:
               
chr1:19145012-19144809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
3-207
               

               
Cow position:
               
chr1:47886575-47886361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
63, 121
               

               
Conread position:
               
3-207
               

               
Cow position:
               
chr1:92989500-92989709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 188
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr1:22730656-22730854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:68826994-68826790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 128
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr1:71227997-71228216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr1:34856720-34856497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr1:52039547-52039767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr1:55229896-55230107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
132, 13
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:101866586-101866362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
3-230
               

               
Cow position:
               
chr1:67688669-67688441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr1:43352747-43352507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
63, 131
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr1:58186656-58186908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr1:27145739-27145491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 148
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr1:98511839-98512098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
74, 185
               

               
Conread position:
               
3-273
               

               
Cow position:
               
chr1:39069044-39068771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 45
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr1:24534343-24534062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
60, 130
               

               
Conread position:
               
4-167
               

               
Cow position:
               
chr1:55135744-55135914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 57
               

               
Conread position:
               
4-168
               

               
Cow position:
               
chr1:60948701-60948872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr1:87888312-87888481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr1:100474143-100474353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr1:91874997-91874800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
130, 53
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr1:95176851-95177054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chr1:50931064-50930847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
72, 22
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr1:3962783-3962537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
105, 42
               

               
Conread position:
               
5-161
               

               
Cow position:
               
chr1:1165515-1165671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
5-173
               

               
Cow position:
               
chr1:69127254-69127082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
5-173
               

               
Cow position:
               
chr1:92370446-92370285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
128, 52
               

               
Conread position:
               
5-176
               

               
Cow position:
               
chr1:13810564-13810734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
125, 52
               

               
Conread position:
               
5-180
               

               
Cow position:
               
chr1:44506881-44507064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr1:6294586-6294400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr1:33409712-33409528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr1:49077421-49077234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr1:73682321-73682145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr1:84906156-84905966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr1:91816859-91816674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chr1:19885296-19885490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chr1:68676274-68676468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
69, 99
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr1:65103532-65103734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
60, 40
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr1:80988258-80988465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
53, 134
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr1:76019783-76019564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
60, 131
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr1:101632426-101632208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
65, 194
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr1:39427089-39426873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
129, 67
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr1:101268095-101267867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
65, 106
               

               
Conread position:
               
6-191
               

               
Cow position:
               
chr1:53425089-53425279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chr1:41696972-41697162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 127
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chr1:71119430-71119626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 175
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chr1:94226638-94226448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
6-206
               

               
Cow position:
               
chr1:101792201-101792005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
126, 43
               

               
Conread position:
               
6-207
               

               
Cow position:
               
chr1:48769717-48769919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
53, 183
               

               
Conread position:
               
6-214
               

               
Cow position:
               
chr1:19465970-19466177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
6-219
               

               
Cow position:
               
chr1:13637749-13637533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
63, 10
               

               
Conread position:
               
7-182
               

               
Cow position:
               
chr1:75382909-75383070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
7-186
               

               
Cow position:
               
chr1:70297191-70297375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
7-188
               

               
Cow position:
               
chr1:78079635-78079818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
7-196
               

               
Cow position:
               
chr1:21787245-21787443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
7-207
               

               
Cow position:
               
chr1:56832859-56832661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
60, 40
               

               
Conread position:
               
7-257
               

               
Cow position:
               
chr1:77892055-77892306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
60, 87
               

               
Conread position:
               
7-258
               

               
Cow position:
               
chr1:95153134-95153391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
8-193
               

               
Cow position:
               
chr1:56635011-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 85
               

               
Conread position:
               
8-194
               

               
Cow position:
               
chr1:31390676-31390483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
44, 39
               

               
Conread position:
               
8-196
               

               
Cow position:
               
chr1:60281286-60281480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
8-206
               

               
Cow position:
               
chr1:21955456-21955256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:71136065-71136276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
62, 160
               

               
Conread position:
               
8-218
               

               
Cow position:
               
chr1:42541512-42541729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
8-218
               

               
Cow position:
               
chr1:71045670-71045874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
8-257
               

               
Cow position:
               
chr1:8347039-8347291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
61, 234
               

               
Conread position:
               
9-185
               

               
Cow position:
               
chr1:47790749-47790570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
60, 157
               

               
Conread position:
               
9-196
               

               
Cow position:
               
chr1:25383580-25383775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
52, 98
               

               
Conread position:
               
9-199
               

               
Cow position:
               
chr1:42869022-42868831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 123
               

               
Conread position:
               
9-207
               

               
Cow position:
               
chr1:49433344-49433145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
125, 63
               

               
Conread position:
               
9-244
               

               
Cow position:
               
chr1:61846062-61846301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 78
               

               
Conread position:
               
10-207
               

               
Cow position:
               
chr1:45223495-45223700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
10-220
               

               
Cow position:
               
chr1:22525793-22526011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr1:61005638-61005414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
10-239
               

               
Cow position:
               
chr1:45555282-45555514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 182
               

               
Conread position:
               
11-202
               

               
Cow position:
               
chr1:25281742-25281545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 182
               

               
Conread position:
               
11-215
               

               
Cow position:
               
chr1:74947204-74946991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
54, 159
               

               
Conread position:
               
11-218
               

               
Cow position:
               
chr1:87197733-87197950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
11-232
               

               
Cow position:
               
chr1:95974313-95974543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
55, 185
               

               
Conread position:
               
12-196
               

               
Cow position:
               
chr1:33998675-33998863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
14, 125
               

               
Conread position:
               
12-220
               

               
Cow position:
               
chr1:52994940-52995162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
13-234
               

               
Cow position:
               
chr1:48214241-48214012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 130
               

               
Conread position:
               
14-218
               

               
Cow position:
               
chr1:27881534-27881736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
14-222
               

               
Cow position:
               
chr1:84812022-84811806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
5, 181
               

               
Conread position:
               
14-222
               

               
Cow position:
               
chr1:98583679-98583887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
107, 68
               

               
Conread position:
               
15-185
               

               
Cow position:
               
chr1:24876184-24876358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
15-195
               

               
Cow position:
               
chr1:70434920-70435104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
51, 44
               

               
Conread position:
               
15-197
               

               
Cow position:
               
chr1:64678618-64678803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
15-220
               

               
Cow position:
               
chr1:98461210-98461416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
15-222
               

               
Cow position:
               
chr1:1956411-1956201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
15-230
               

               
Cow position:
               
chr1:81913232-81913013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
55, 121
               

               
Conread position:
               
15-240
               

               
Cow position:
               
chr1:37707051-37706825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 122
               

               
Conread position:
               
16-173
               

               
Cow position:
               
chr1:39681919-39682078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
16-185
               

               
Cow position:
               
chr1:26729640-26729810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 135
               

               
Conread position:
               
16-196
               

               
Cow position:
               
chr1:41252483-41252303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 119
               

               
Conread position:
               
16-207
               

               
Cow position:
               
chr1:8540-8732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 173
               

               
Conread position:
               
16-207
               

               
Cow position:
               
chr1:80336321-80336130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
16-207
               

               
Cow position:
               
chr1:91811705-91811897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 110
               

               
Conread position:
               
16-211
               

               
Cow position:
               
chr1:102753775-102753981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
16-214
               

               
Cow position:
               
chr1:6826371-6826173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
54, 119
               

               
Conread position:
               
16-220
               

               
Cow position:
               
chr1:45019884-45019667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
16-220
               

               
Cow position:
               
chr1:51394339-51394549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
16-220
               

               
Cow position:
               
chr1:93554762-93554968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr1:3323789-3324007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
16-228
               

               
Cow position:
               
chr1:96081404-96081620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
49, 151
               

               
Conread position:
               
16-258
               

               
Cow position:
               
chr1:6240355-6240112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 33
               

               
Conread position:
               
16-258
               

               
Cow position:
               
chr1:68672676-68672431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 103
               

               
Conread position:
               
16-259
               

               
Cow position:
               
chr1:81580093-81580347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
49, 133
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr1:83747864-83748111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 34
               

               
Conread position:
               
16-262
               

               
Cow position:
               
chr1:98594496-98594729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
50, 89
               

               
Conread position:
               
19-139
               

               
Cow position:
               
chr1:5674392-5674517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
21-246
               

               
Cow position:
               
chr1:186348-186123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
21-252
               

               
Cow position:
               
chr1:40207192-40206949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
43, 203
               

               
Conread position:
               
22-236
               

               
Cow position:
               
chr1:58036948-58037166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
25-169
               

               
Cow position:
               
chr1:74832359-74832501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
25-207
               

               
Cow position:
               
chr1:96019166-96019346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
109, 46
               

               
Conread position:
               
25-222
               

               
Cow position:
               
chr1:73936219-73936006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
25-237
               

               
Cow position:
               
chr1:30983558-30983346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
25-242
               

               
Cow position:
               
chr1:92684759-92684540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
81, 46
               

               
Conread position:
               
25-248
               

               
Cow position:
               
chr1:78068132-78067909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
109, 46
               

               
Conread position:
               
26-184
               

               
Cow position:
               
chr1:99512330-99512170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
27-173
               

               
Cow position:
               
chr1:51609308-51609460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
28-194
               

               
Cow position:
               
chr1:16855761-16855594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
28-196
               

               
Cow position:
               
chr1:235819-235655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 74
               

               
Conread position:
               
28-206
               

               
Cow position:
               
chr1:19515679-19515501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
106, 31
               

               
Conread position:
               
28-206
               

               
Cow position:
               
chr1:56225723-56225903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
28-250
               

               
Cow position:
               
chr1:98575981-98576212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 164
               

               
Conread position:
               
29-198
               

               
Cow position:
               
chr1:77265379-77265542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
29-219
               

               
Cow position:
               
chr1:8624513-8624319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 159
               

               
Conread position:
               
30-220
               

               
Cow position:
               
chr1:43312091-43311899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
31-187
               

               
Cow position:
               
chr1:82942225-82942379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 54
               

               
Conread position:
               
31-187
               

               
Cow position:
               
chr1:82944333-82944179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 54
               

               
Conread position:
               
31-207
               

               
Cow position:
               
chr1:101507296-101507478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 161
               

               
Conread position:
               
32-208
               

               
Cow position:
               
chr1:62235508-62235327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
32-220
               

               
Cow position:
               
chr1:22035548-22035743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
32-233
               

               
Cow position:
               
chr1:76658140-76657920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
34-183
               

               
Cow position:
               
chr1:30504443-30504595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
34-185
               

               
Cow position:
               
chr1:96583659-96583497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
34-196
               

               
Cow position:
               
chr1:21560957-21561119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 37
               

               
Conread position:
               
34-207
               

               
Cow position:
               
chr1:46764815-46764994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 153
               

               
Conread position:
               
34-207
               

               
Cow position:
               
chr1:68127246-68127071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
34-207
               

               
Cow position:
               
chr1:99221413-99221237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
34-224
               

               
Cow position:
               
chr1:84768936-84768743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
36-207
               

               
Cow position:
               
chr1:31357568-31357393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 143
               

               
Conread position:
               
36-243
               

               
Cow position:
               
chr1:42138800-42139014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
37-220
               

               
Cow position:
               
chr1:81481440-81481252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 155
               

               
Conread position:
               
37-242
               

               
Cow position:
               
chr1:6854359-6854155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
41-219
               

               
Cow position:
               
chr1:69482003-69481817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
41-224
               

               
Cow position:
               
chr1:76613188-76612999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
45-229
               

               
Cow position:
               
chr1:84203465-84203652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 132
               

               
Conread position:
               
51-208
               

               
Cow position:
               
chr1:2462342-2462496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
54-219
               

               
Cow position:
               
chr1:95835836-95835667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
55-207
               

               
Cow position:
               
chr1:87095248-87095096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
56-199
               

               
Cow position:
               
chr1:72422439-72422300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 7
               

               
Conread position:
               
56-219
               

               
Cow position:
               
chr1:77739688-77739852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 134
               

               
Conread position:
               
57-207
               

               
Cow position:
               
chr1:57089713-57089562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 118
               

               
Conread position:
               
57-207
               

               
Cow position:
               
chr1:81858936-81858781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
57-278
               

               
Cow position:
               
chr1:28470794-28471021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
58-234
               

               
Cow position:
               
chr1:86340495-86340321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
137, 13
               

               
Conread position:
               
60-199
               

               
Cow position:
               
chr1:97144496-97144357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
61-182
               

               
Cow position:
               
chr1:73721332-73721453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
61-199
               

               
Cow position:
               
chr1:67529027-67529164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
61-210
               

               
Cow position:
               
chr1:81515204-81515353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 127
               

               
Conread position:
               
61-219
               

               
Cow position:
               
chr1:8287659-8287500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
72, 124
               

               
Conread position:
               
61-244
               

               
Cow position:
               
chr1:101177485-101177671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
16, 102
               

               
Conread position:
               
62-234
               

               
Cow position:
               
chr1:65881780-65881951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
62-269
               

               
Cow position:
               
chr1:8670746-8670952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
63-213
               

               
Cow position:
               
chr1:74082009-74081857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
63-220
               

               
Cow position:
               
chr1:20864030-20864185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
135, 69
               

               
Conread position:
               
63-230
               

               
Cow position:
               
chr1:85712415-85712580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
63-238
               

               
Cow position:
               
chr1:9143695-9143870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
121, 63
               

               
Conread position:
               
63-255
               

               
Cow position:
               
chr1:21093090-21093279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
69, 127
               

               
Conread position:
               
64-207
               

               
Cow position:
               
chr1:52488006-52487863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 109
               

               
Conread position:
               
65-281
               

               
Cow position:
               
chr1:36875005-36875219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
133, 61
               

               
Conread position:
               
66-208
               

               
Cow position:
               
chr1:5637083-5636938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
66-213
               

               
Cow position:
               
chr1:102648254-102648403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
67-199
               

               
Cow position:
               
chr1:38706877-38706745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 121
               

               
Conread position:
               
67-199
               

               
Cow position:
               
chr1:71916142-71916011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 49
               

               
Conread position:
               
67-200
               

               
Cow position:
               
chr1:81809161-81809029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 46
               

               
Conread position:
               
68-195
               

               
Cow position:
               
chr1:102346058-102345929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
68-207
               

               
Cow position:
               
chr1:54157272-54157415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
42, 122
               

               
Conread position:
               
68-235
               

               
Cow position:
               
chr1:98897716-98897548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
69, 146
               

               
Conread position:
               
69-234
               

               
Cow position:
               
chr1:7908016-7908181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 144
               

               
Conread position:
               
71-183
               

               
Cow position:
               
chr1:98636686-98636799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
71-210
               

               
Cow position:
               
chr1:49980691-49980831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
71-211
               

               
Cow position:
               
chr1:88111856-88111992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
71-219
               

               
Cow position:
               
chr1:63078991-63079138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
62, 70
               

               
Conread position:
               
71-227
               

               
Cow position:
               
chr1:3914937-3914778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
71-380
               

               
Cow position:
               
chr1:67918738-67919041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
63, 143
               

               
Conread position:
               
72-207
               

               
Cow position:
               
chr1:45478877-45478744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
129, 60
               

               
Conread position:
               
72-207
               

               
Cow position:
               
chr1:73020680-73020544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
72-219
               

               
Cow position:
               
chr1:852152-852301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 116
               

               
Conread position:
               
72-219
               

               
Cow position:
               
chr1:51860579-51860430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
72-219
               

               
Cow position:
               
chr1:95618624-95618771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 116
               

               
Conread position:
               
73-208
               

               
Cow position:
               
chr1:69940840-69940703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
73-244
               

               
Cow position:
               
chr1:76735495-76735325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
125, 59
               

               
Conread position:
               
76-195
               

               
Cow position:
               
chr1:24570961-24570841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
76-207
               

               
Cow position:
               
chr1:242543-242676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
76-211
               

               
Cow position:
               
chr1:66752643-66752506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 109
               

               
Conread position:
               
76-213
               

               
Cow position:
               
chr1:61011167-61011306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
76-247
               

               
Cow position:
               
chr1:45874092-45873910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
77-232
               

               
Cow position:
               
chr1:6381759-6381915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 95
               

               
Conread position:
               
77-271
               

               
Cow position:
               
chr1:98683861-98684056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 67
               

               
Conread position:
               
79-241
               

               
Cow position:
               
chr1:64019532-64019367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
79-251
               

               
Cow position:
               
chr1:19304561-19304727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 69
               

               
Conread position:
               
80-221
               

               
Cow position:
               
chr1:22461248-22461105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
82-212
               

               
Cow position:
               
chr1:42178737-42178869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
83-199
               

               
Cow position:
               
chr1:92603011-92603128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 103
               

               
Conread position:
               
84-226
               

               
Cow position:
               
chr1:69445323-69445470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
91-232
               

               
Cow position:
               
chr1:68730002-68730143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
93-220
               

               
Cow position:
               
chr1:32014201-32014328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
95-207
               

               
Cow position:
               
chr1:31630282-31630168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
97-252
               

               
Cow position:
               
chr1:49358055-49358211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
38, 91
               

               
Conread position:
               
99-220
               

               
Cow position:
               
chr1:79409460-79409586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
99-244
               

               
Cow position:
               
chr1:46100831-46100685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
35, 141
               

               
Conread position:
               
102-199
               

               
Cow position:
               
chr1:83606438-83606340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
102-207
               

               
Cow position:
               
chr1:81638560-81638667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
103-219
               

               
Cow position:
               
chr1:70044369-70044484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
105-197
               

               
Cow position:
               
chr1:46939870-46939778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
105-243
               

               
Cow position:
               
chr1:55194231-55194093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 134
               

               
Conread position:
               
105-247
               

               
Cow position:
               
chr1:43148530-43148389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 108
               

               
Conread position:
               
106-233
               

               
Cow position:
               
chr1:38544236-38544110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
107-253
               

               
Cow position:
               
chr1:99024214-99024065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
113-237
               

               
Cow position:
               
chr1:47883593-47883465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
113-275
               

               
Cow position:
               
chr1:34318763-34318600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 127
               

               
Conread position:
               
117-263
               

               
Cow position:
               
chr1:76080834-76080980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
144-388
               

               
Cow position:
               
chr1:32215488-32215240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
54, 43
               
Show alignments to all cow chromosomes.