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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8041I01.3
        

               
Conread position:
               
405-685
               

               
Cow position:
               
chr11:57767470-57767186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
53, 170
               

               
Conread position:
               
406-728
               

               
Cow position:
               
chr11:8670288-8669960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 10
               

               
Conread position:
               
418-769
               

               
Cow position:
               
chr11:19594081-19593730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
438-729
               

               
Cow position:
               
chr11:81763106-81762814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
126, 20
               

               
Conread position:
               
440-767
               

               
Cow position:
               
chr11:71934713-71935040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
28, 63
               

               
Conread position:
               
443-675
               

               
Cow position:
               
chr11:35924295-35924066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
169, 19
               

               
Conread position:
               
445-688
               

               
Cow position:
               
chr11:42155462-42155217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
445-722
               

               
Cow position:
               
chr11:3715060-3714784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 239
               

               
Conread position:
               
447-769
               

               
Cow position:
               
chr11:37999484-37999172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
448-579
               

               
Cow position:
               
chr11:16796738-16796607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
448-695
               

               
Cow position:
               
chr11:77017464-77017227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 126
               

               
Conread position:
               
449-644
               

               
Cow position:
               
chr11:17465846-17466053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
449-723
               

               
Cow position:
               
chr11:70422366-70422638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
449-764
               

               
Cow position:
               
chr11:4052014-4052315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
144, 40
               

               
Conread position:
               
451-667
               

               
Cow position:
               
chr11:44614940-44615154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
161, 25
               

               
Conread position:
               
451-728
               

               
Cow position:
               
chr11:18924972-18924698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 22
               

               
Conread position:
               
452-695
               

               
Cow position:
               
chr11:49625692-49625931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 14
               

               
Conread position:
               
452-722
               

               
Cow position:
               
chr11:66289779-66289510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
161, 9
               

               
Conread position:
               
453-749
               

               
Cow position:
               
chr11:44223105-44222819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
161, 21
               

               
Conread position:
               
454-722
               

               
Cow position:
               
chr11:16315099-16314831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 30
               

               
Conread position:
               
454-769
               

               
Cow position:
               
chr11:53773905-53773591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 29
               

               
Conread position:
               
455-722
               

               
Cow position:
               
chr11:5961531-5961262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
156, 47
               

               
Conread position:
               
455-761
               

               
Cow position:
               
chr11:47638800-47639107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
456-721
               

               
Cow position:
               
chr11:27913508-27913244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 28
               

               
Conread position:
               
457-686
               

               
Cow position:
               
chr11:56248962-56248740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
457-694
               

               
Cow position:
               
chr11:49396303-49396539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 112
               

               
Conread position:
               
459-775
               

               
Cow position:
               
chr11:29659776-29659468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 43
               

               
Conread position:
               
460-661
               

               
Cow position:
               
chr11:76896148-76896355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
460-764
               

               
Cow position:
               
chr11:37975139-37974844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 14
               

               
Conread position:
               
460-764
               

               
Cow position:
               
chr11:48383752-48383448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 208
               

               
Conread position:
               
461-619
               

               
Cow position:
               
chr11:48888142-48888301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
462-714
               

               
Cow position:
               
chr11:3597338-3597084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
463-722
               

               
Cow position:
               
chr11:34616481-34616217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
464-696
               

               
Cow position:
               
chr11:15366765-15366988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 19
               

               
Conread position:
               
464-698
               

               
Cow position:
               
chr11:12555088-12555323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
464-714
               

               
Cow position:
               
chr11:35665345-35665596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
464-721
               

               
Cow position:
               
chr11:69978181-69977930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
146, 60
               

               
Conread position:
               
464-722
               

               
Cow position:
               
chr11:10956660-10956914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
100, 19
               

               
Conread position:
               
464-728
               

               
Cow position:
               
chr11:70251128-70250868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
150, 35
               

               
Conread position:
               
464-761
               

               
Cow position:
               
chr11:30355267-30354979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
464-769
               

               
Cow position:
               
chr11:48672932-48672627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 226
               

               
Conread position:
               
465-680
               

               
Cow position:
               
chr11:25721794-25721993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
147, 23
               

               
Conread position:
               
465-685
               

               
Cow position:
               
chr11:33368280-33368078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
465-703
               

               
Cow position:
               
chr11:65574235-65574481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
465-704
               

               
Cow position:
               
chr11:19891046-19890820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
145, 11
               

               
Conread position:
               
465-716
               

               
Cow position:
               
chr11:54741859-54742116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 105
               

               
Conread position:
               
465-728
               

               
Cow position:
               
chr11:47351550-47351295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
151, 163
               

               
Conread position:
               
465-764
               

               
Cow position:
               
chr11:59463427-59463719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
59, 36
               

               
Conread position:
               
465-769
               

               
Cow position:
               
chr11:2084361-2084055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
465-769
               

               
Cow position:
               
chr11:14470579-14470284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
466-658
               

               
Cow position:
               
chr11:41141096-41140909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
145, 29
               

               
Conread position:
               
466-659
               

               
Cow position:
               
chr11:46314225-46314032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
466-661
               

               
Cow position:
               
chr11:7616991-7617187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
466-678
               

               
Cow position:
               
chr11:6353020-6352811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
129, 28
               

               
Conread position:
               
466-679
               

               
Cow position:
               
chr11:81143330-81143541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
145, 115
               

               
Conread position:
               
466-680
               

               
Cow position:
               
chr11:82725396-82725172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
466-691
               

               
Cow position:
               
chr11:41979988-41980215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
466-693
               

               
Cow position:
               
chr11:31901387-31901173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 78
               

               
Conread position:
               
466-716
               

               
Cow position:
               
chr11:58927787-58927548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
199, 101
               

               
Conread position:
               
466-769
               

               
Cow position:
               
chr11:7331254-7330964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
81, 6
               

               
Conread position:
               
466-769
               

               
Cow position:
               
chr11:35536789-35536501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
145, 60
               

               
Conread position:
               
466-769
               

               
Cow position:
               
chr11:63034952-63035264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
37, 208
               

               
Conread position:
               
467-601
               

               
Cow position:
               
chr11:44858939-44859078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
467-622
               

               
Cow position:
               
chr11:43736897-43737049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
105, 27
               

               
Conread position:
               
467-638
               

               
Cow position:
               
chr11:15744873-15745043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
467-644
               

               
Cow position:
               
chr11:65436434-65436257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 32
               

               
Conread position:
               
467-690
               

               
Cow position:
               
chr11:471497-471270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 16
               

               
Conread position:
               
467-695
               

               
Cow position:
               
chr11:1485646-1485875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
467-714
               

               
Cow position:
               
chr11:36297462-36297716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
7, 79
               

               
Conread position:
               
467-727
               

               
Cow position:
               
chr11:23407674-23407415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
467-763
               

               
Cow position:
               
chr11:53510283-53510583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
468-660
               

               
Cow position:
               
chr11:71303793-71303599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
25, 120
               

               
Conread position:
               
468-667
               

               
Cow position:
               
chr11:32800842-32800639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
468-668
               

               
Cow position:
               
chr11:35544297-35544097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
143, 34
               

               
Conread position:
               
468-684
               

               
Cow position:
               
chr11:71456042-71455821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
468-690
               

               
Cow position:
               
chr11:64781297-64781077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 17
               

               
Conread position:
               
468-705
               

               
Cow position:
               
chr11:84764227-84764012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
468-706
               

               
Cow position:
               
chr11:27972211-27972450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
59, 225
               

               
Conread position:
               
468-721
               

               
Cow position:
               
chr11:8259289-8259035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
143, 188
               

               
Conread position:
               
468-764
               

               
Cow position:
               
chr11:13592948-13592655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
468-764
               

               
Cow position:
               
chr11:29308792-29308493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 15
               

               
Conread position:
               
468-764
               

               
Cow position:
               
chr11:42016429-42016714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 16
               

               
Conread position:
               
468-764
               

               
Cow position:
               
chr11:81167819-81168113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 146
               

               
Conread position:
               
468-769
               

               
Cow position:
               
chr11:77750543-77750858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
28, 199
               

               
Conread position:
               
468-769
               

               
Cow position:
               
chr11:77758550-77758844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
144, 7
               

               
Conread position:
               
469-616
               

               
Cow position:
               
chr11:81043320-81043467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
14, 143
               

               
Conread position:
               
469-633
               

               
Cow position:
               
chr11:30528815-30528646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
469-680
               

               
Cow position:
               
chr11:47950833-47950617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
469-696
               

               
Cow position:
               
chr11:87171866-87172092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
469-703
               

               
Cow position:
               
chr11:46884588-46884351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
469-711
               

               
Cow position:
               
chr11:81849099-81848857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
144, 66
               

               
Conread position:
               
469-714
               

               
Cow position:
               
chr11:32595667-32595424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
145, 19
               

               
Conread position:
               
469-714
               

               
Cow position:
               
chr11:33639426-33639182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
56, 102
               

               
Conread position:
               
469-723
               

               
Cow position:
               
chr11:32777882-32777637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
105, 32
               

               
Conread position:
               
469-753
               

               
Cow position:
               
chr11:20762059-20761775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
94, 6
               

               
Conread position:
               
470-610
               

               
Cow position:
               
chr11:36180654-36180518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 95
               

               
Conread position:
               
470-616
               

               
Cow position:
               
chr11:43627861-43628001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
470-618
               

               
Cow position:
               
chr11:21637391-21637538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
470-636
               

               
Cow position:
               
chr11:32586918-32587079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
470-638
               

               
Cow position:
               
chr11:6784415-6784251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
470-666
               

               
Cow position:
               
chr11:40011979-40012175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
143, 85
               

               
Conread position:
               
470-669
               

               
Cow position:
               
chr11:7651862-7652055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
142, 16
               

               
Conread position:
               
470-685
               

               
Cow position:
               
chr11:32653502-32653281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
470-687
               

               
Cow position:
               
chr11:62456050-62456266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
470-704
               

               
Cow position:
               
chr11:10876486-10876255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
140, 25
               

               
Conread position:
               
470-707
               

               
Cow position:
               
chr11:18119711-18119475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
141, 32
               

               
Conread position:
               
470-711
               

               
Cow position:
               
chr11:32869214-32868972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 66
               

               
Conread position:
               
470-716
               

               
Cow position:
               
chr11:15369602-15369352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
470-725
               

               
Cow position:
               
chr11:27747128-27746879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
142, 103
               

               
Conread position:
               
470-728
               

               
Cow position:
               
chr11:34896781-34896512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
470-763
               

               
Cow position:
               
chr11:40395645-40395357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 5
               

               
Conread position:
               
470-764
               

               
Cow position:
               
chr11:64077293-64077585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
470-769
               

               
Cow position:
               
chr11:5075018-5075314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
470-769
               

               
Cow position:
               
chr11:70600617-70600905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 212
               

               
Conread position:
               
470-769
               

               
Cow position:
               
chr11:77745044-77745342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 34
               

               
Conread position:
               
470-772
               

               
Cow position:
               
chr11:32254007-32254307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
471-668
               

               
Cow position:
               
chr11:26057438-26057638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
471-680
               

               
Cow position:
               
chr11:3728697-3728486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
11, 195
               

               
Conread position:
               
471-682
               

               
Cow position:
               
chr11:32748005-32747793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
471-697
               

               
Cow position:
               
chr11:75246374-75246143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 197
               

               
Conread position:
               
471-712
               

               
Cow position:
               
chr11:5792615-5792374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
142, 13
               

               
Conread position:
               
471-713
               

               
Cow position:
               
chr11:19739186-19739428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
471-722
               

               
Cow position:
               
chr11:8437481-8437733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
109, 51
               

               
Conread position:
               
471-726
               

               
Cow position:
               
chr11:49255619-49255359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
471-726
               

               
Cow position:
               
chr11:62889685-62889939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
471-764
               

               
Cow position:
               
chr11:7378791-7378515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
253, 86
               

               
Conread position:
               
472-651
               

               
Cow position:
               
chr11:23297870-23297691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
116, 141
               

               
Conread position:
               
472-666
               

               
Cow position:
               
chr11:36847376-36847182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
139, 30
               

               
Conread position:
               
472-692
               

               
Cow position:
               
chr11:42786474-42786695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
104, 128
               

               
Conread position:
               
472-699
               

               
Cow position:
               
chr11:66099651-66099881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
92, 11
               

               
Conread position:
               
472-701
               

               
Cow position:
               
chr11:82450309-82450080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
139, 11
               

               
Conread position:
               
472-714
               

               
Cow position:
               
chr11:5294416-5294168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 200
               

               
Conread position:
               
472-716
               

               
Cow position:
               
chr11:62742437-62742678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 110
               

               
Conread position:
               
472-722
               

               
Cow position:
               
chr11:83042033-83042297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
472-724
               

               
Cow position:
               
chr11:7874346-7874095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 12
               

               
Conread position:
               
472-725
               

               
Cow position:
               
chr11:63519202-63518957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
24, 42
               

               
Conread position:
               
472-736
               

               
Cow position:
               
chr11:897869-897618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
142, 16
               

               
Conread position:
               
472-762
               

               
Cow position:
               
chr11:62239948-62239664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
140, 30
               

               
Conread position:
               
472-764
               

               
Cow position:
               
chr11:36940384-36940677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 273
               

               
Conread position:
               
472-769
               

               
Cow position:
               
chr11:36059007-36058717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
18, 227
               

               
Conread position:
               
472-769
               

               
Cow position:
               
chr11:53778829-53778529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
473-575
               

               
Cow position:
               
chr11:62156066-62155965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
473-588
               

               
Cow position:
               
chr11:50914947-50914834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
473-655
               

               
Cow position:
               
chr11:36361433-36361617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
473-680
               

               
Cow position:
               
chr11:80370320-80370115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 29
               

               
Conread position:
               
473-688
               

               
Cow position:
               
chr11:67572079-67571865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
138, 22
               

               
Conread position:
               
473-711
               

               
Cow position:
               
chr11:35562928-35562689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
473-714
               

               
Cow position:
               
chr11:6857939-6857697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
473-714
               

               
Cow position:
               
chr11:29954576-29954338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
473-714
               

               
Cow position:
               
chr11:34968406-34968647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 165
               

               
Conread position:
               
473-714
               

               
Cow position:
               
chr11:52132614-52132853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
84, 127
               

               
Conread position:
               
473-722
               

               
Cow position:
               
chr11:17278476-17278713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
35, 58
               

               
Conread position:
               
473-722
               

               
Cow position:
               
chr11:63065858-63065614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
141, 29
               

               
Conread position:
               
473-725
               

               
Cow position:
               
chr11:13863896-13864149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 11
               

               
Conread position:
               
473-725
               

               
Cow position:
               
chr11:59024145-59024408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
17, 178
               

               
Conread position:
               
473-731
               

               
Cow position:
               
chr11:37278029-37278274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
136, 11
               

               
Conread position:
               
473-748
               

               
Cow position:
               
chr11:75874564-75874823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 102
               

               
Conread position:
               
473-749
               

               
Cow position:
               
chr11:31228160-31227897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
141, 47
               

               
Conread position:
               
473-753
               

               
Cow position:
               
chr11:1147159-1147441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
108, 272
               

               
Conread position:
               
473-759
               

               
Cow position:
               
chr11:55636018-55636307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
473-764
               

               
Cow position:
               
chr11:21549691-21549402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
23, 145
               

               
Conread position:
               
473-764
               

               
Cow position:
               
chr11:46329704-46329416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
141, 29
               

               
Conread position:
               
473-769
               

               
Cow position:
               
chr11:43430235-43430543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
89, 20
               

               
Conread position:
               
473-769
               

               
Cow position:
               
chr11:72375460-72375772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 22
               

               
Conread position:
               
474-571
               

               
Cow position:
               
chr11:79433850-79433754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
474-601
               

               
Cow position:
               
chr11:41295013-41295143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 110
               

               
Conread position:
               
474-644
               

               
Cow position:
               
chr11:30874488-30874317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
474-645
               

               
Cow position:
               
chr11:24551598-24551426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
24, 160
               

               
Conread position:
               
474-650
               

               
Cow position:
               
chr11:4443806-4443981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
138, 19
               

               
Conread position:
               
474-659
               

               
Cow position:
               
chr11:62606623-62606438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
474-675
               

               
Cow position:
               
chr11:31554571-31554770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
474-678
               

               
Cow position:
               
chr11:57936991-57937190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
138, 28
               

               
Conread position:
               
474-679
               

               
Cow position:
               
chr11:63201463-63201256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
474-686
               

               
Cow position:
               
chr11:25135071-25135292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
474-689
               

               
Cow position:
               
chr11:62204858-62204645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
140, 9
               

               
Conread position:
               
474-690
               

               
Cow position:
               
chr11:1625016-1625233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
474-692
               

               
Cow position:
               
chr11:37752220-37752442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 138
               

               
Conread position:
               
474-693
               

               
Cow position:
               
chr11:35434451-35434676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 205
               

               
Conread position:
               
474-695
               

               
Cow position:
               
chr11:65842871-65843088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
138, 35
               

               
Conread position:
               
474-696
               

               
Cow position:
               
chr11:3119181-3118960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
139, 81
               

               
Conread position:
               
474-696
               

               
Cow position:
               
chr11:66896591-66896813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 139
               

               
Conread position:
               
474-697
               

               
Cow position:
               
chr11:21830004-21830226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
474-697
               

               
Cow position:
               
chr11:25968648-25968867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 10
               

               
Conread position:
               
474-697
               

               
Cow position:
               
chr11:73940355-73940576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
26, 201
               

               
Conread position:
               
474-701
               

               
Cow position:
               
chr11:27514679-27514897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
474-708
               

               
Cow position:
               
chr11:45350306-45350539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 12
               

               
Conread position:
               
474-711
               

               
Cow position:
               
chr11:33002173-33001934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
474-714
               

               
Cow position:
               
chr11:4495188-4495423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
474-714
               

               
Cow position:
               
chr11:8496238-8495999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
474-715
               

               
Cow position:
               
chr11:65826548-65826785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
138, 55
               

               
Conread position:
               
474-720
               

               
Cow position:
               
chr11:78820355-78820111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 109
               

               
Conread position:
               
474-725
               

               
Cow position:
               
chr11:1932282-1932536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
88, 111
               

               
Conread position:
               
474-725
               

               
Cow position:
               
chr11:71708010-71707772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
138, 60
               

               
Conread position:
               
474-728
               

               
Cow position:
               
chr11:22102696-22102952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
474-728
               

               
Cow position:
               
chr11:63866456-63866706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
6, 29
               

               
Conread position:
               
474-728
               

               
Cow position:
               
chr11:65058406-65058666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
474-729
               

               
Cow position:
               
chr11:62663043-62663280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
140, 20
               

               
Conread position:
               
474-741
               

               
Cow position:
               
chr11:2788600-2788333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
138, 20
               

               
Conread position:
               
474-761
               

               
Cow position:
               
chr11:5418055-5418341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
212, 20
               

               
Conread position:
               
474-761
               

               
Cow position:
               
chr11:62579007-62578723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
139, 9
               

               
Conread position:
               
474-763
               

               
Cow position:
               
chr11:24438013-24438306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 163
               

               
Conread position:
               
474-763
               

               
Cow position:
               
chr11:41549133-41549411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
138, 29
               

               
Conread position:
               
474-764
               

               
Cow position:
               
chr11:5433471-5433181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
137, 28
               

               
Conread position:
               
474-764
               

               
Cow position:
               
chr11:45742573-45742297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
140, 15
               

               
Conread position:
               
474-764
               

               
Cow position:
               
chr11:56288749-56288466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
137, 20
               

               
Conread position:
               
474-764
               

               
Cow position:
               
chr11:66572287-66572582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
106, 30
               

               
Conread position:
               
474-768
               

               
Cow position:
               
chr11:8457693-8457988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
18, 270
               

               
Conread position:
               
474-768
               

               
Cow position:
               
chr11:55744675-55744386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 257
               

               
Conread position:
               
474-768
               

               
Cow position:
               
chr11:67911960-67912238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
140, 15
               

               
Conread position:
               
474-768
               

               
Cow position:
               
chr11:70382482-70382777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
16, 222
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chr11:7924396-7924676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 58
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chr11:13500216-13499930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 50
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chr11:31024595-31024894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
88, 269
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chr11:42067068-42066772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 27
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chr11:42835745-42836047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
7, 69
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chr11:42919010-42919317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chr11:51748088-51748385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 194
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chr11:70756680-70756395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 105
               

               
Conread position:
               
474-772
               

               
Cow position:
               
chr11:59862416-59862120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
119, 270
               

               
Conread position:
               
475-602
               

               
Cow position:
               
chr11:71481823-71481946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
475-628
               

               
Cow position:
               
chr11:9294000-9293847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
30, 117
               

               
Conread position:
               
475-631
               

               
Cow position:
               
chr11:13397304-13397458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
475-635
               

               
Cow position:
               
chr11:38643750-38643587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
475-652
               

               
Cow position:
               
chr11:7464829-7465007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
475-661
               

               
Cow position:
               
chr11:7250300-7250111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
15, 159
               

               
Conread position:
               
475-673
               

               
Cow position:
               
chr11:39507179-39507386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
475-685
               

               
Cow position:
               
chr11:33971596-33971808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
475-696
               

               
Cow position:
               
chr11:48315196-48315412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
137, 26
               

               
Conread position:
               
475-701
               

               
Cow position:
               
chr11:17517604-17517378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
475-712
               

               
Cow position:
               
chr11:67312988-67312749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
475-714
               

               
Cow position:
               
chr11:953564-953323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
475-714
               

               
Cow position:
               
chr11:25698079-25698321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
475-722
               

               
Cow position:
               
chr11:25119733-25119972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
137, 26
               

               
Conread position:
               
475-722
               

               
Cow position:
               
chr11:28078694-28078462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 96
               

               
Conread position:
               
475-722
               

               
Cow position:
               
chr11:85514186-85513954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
215, 27
               

               
Conread position:
               
475-725
               

               
Cow position:
               
chr11:77013977-77013740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 117
               

               
Conread position:
               
475-728
               

               
Cow position:
               
chr11:13940393-13940142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
16, 77
               

               
Conread position:
               
475-754
               

               
Cow position:
               
chr11:20194218-20194501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
475-764
               

               
Cow position:
               
chr11:39060402-39060681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
137, 26
               

               
Conread position:
               
475-769
               

               
Cow position:
               
chr11:63397018-63396730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
15, 42
               

               
Conread position:
               
476-572
               

               
Cow position:
               
chr11:28617631-28617727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
476-639
               

               
Cow position:
               
chr11:9087914-9088075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
476-640
               

               
Cow position:
               
chr11:23278948-23279117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
476-645
               

               
Cow position:
               
chr11:2937468-2937628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
135, 93
               

               
Conread position:
               
476-645
               

               
Cow position:
               
chr11:33271630-33271466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
135, 13
               

               
Conread position:
               
476-650
               

               
Cow position:
               
chr11:65431717-65431549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
113, 19
               

               
Conread position:
               
476-654
               

               
Cow position:
               
chr11:34041846-34041669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
476-660
               

               
Cow position:
               
chr11:33369355-33369171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 23
               

               
Conread position:
               
476-661
               

               
Cow position:
               
chr11:62535115-62534928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
476-667
               

               
Cow position:
               
chr11:23217775-23217583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
476-670
               

               
Cow position:
               
chr11:20022036-20021830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
476-673
               

               
Cow position:
               
chr11:21590590-21590392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
476-674
               

               
Cow position:
               
chr11:18777389-18777592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 189
               

               
Conread position:
               
476-675
               

               
Cow position:
               
chr11:81673630-81673430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
476-676
               

               
Cow position:
               
chr11:6319924-6320128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
476-684
               

               
Cow position:
               
chr11:23220564-23220358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
135, 68
               

               
Conread position:
               
476-686
               

               
Cow position:
               
chr11:81614322-81614519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
138, 12
               

               
Conread position:
               
476-688
               

               
Cow position:
               
chr11:39016-38803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
476-689
               

               
Cow position:
               
chr11:23518412-23518628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
476-692
               

               
Cow position:
               
chr11:6094199-6094414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
476-693
               

               
Cow position:
               
chr11:12080047-12079824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
476-695
               

               
Cow position:
               
chr11:42191976-42192202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
85, 11
               

               
Conread position:
               
476-696
               

               
Cow position:
               
chr11:44032208-44031996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
136, 25
               

               
Conread position:
               
476-696
               

               
Cow position:
               
chr11:47314217-47314447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 153
               

               
Conread position:
               
476-702
               

               
Cow position:
               
chr11:84775293-84775053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
476-709
               

               
Cow position:
               
chr11:68883922-68883690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
135, 25
               

               
Conread position:
               
476-711
               

               
Cow position:
               
chr11:6107715-6107954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
14, 227
               

               
Conread position:
               
476-711
               

               
Cow position:
               
chr11:66939388-66939623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
476-711
               

               
Cow position:
               
chr11:80556422-80556192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
111, 93
               

               
Conread position:
               
476-712
               

               
Cow position:
               
chr11:18508824-18509062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
476-714
               

               
Cow position:
               
chr11:63527361-63527591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
14, 140
               

               
Conread position:
               
476-722
               

               
Cow position:
               
chr11:35805866-35805617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
12, 217
               

               
Conread position:
               
476-722
               

               
Cow position:
               
chr11:48650191-48649931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
476-723
               

               
Cow position:
               
chr11:30172503-30172263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
137, 91
               

               
Conread position:
               
476-723
               

               
Cow position:
               
chr11:55053066-55052828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
136, 26
               

               
Conread position:
               
476-724
               

               
Cow position:
               
chr11:48776108-48776361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
476-727
               

               
Cow position:
               
chr11:40794143-40794397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 131
               

               
Conread position:
               
476-729
               

               
Cow position:
               
chr11:43914497-43914245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 236
               

               
Conread position:
               
476-731
               

               
Cow position:
               
chr11:30893491-30893748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
14, 226
               

               
Conread position:
               
476-741
               

               
Cow position:
               
chr11:41437981-41438246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 252
               

               
Conread position:
               
476-741
               

               
Cow position:
               
chr11:68554887-68555154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
476-742
               

               
Cow position:
               
chr11:80893987-80893721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
14, 199
               

               
Conread position:
               
476-756
               

               
Cow position:
               
chr11:26143895-26144170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 48
               

               
Conread position:
               
476-760
               

               
Cow position:
               
chr11:48296226-48295955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
136, 18
               

               
Conread position:
               
476-764
               

               
Cow position:
               
chr11:4662862-4663127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 13
               

               
Conread position:
               
476-764
               

               
Cow position:
               
chr11:6399859-6400151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 150
               

               
Conread position:
               
476-764
               

               
Cow position:
               
chr11:26066982-26067264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
476-764
               

               
Cow position:
               
chr11:64103851-64104139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
138, 8
               

               
Conread position:
               
476-764
               

               
Cow position:
               
chr11:70206519-70206240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 93
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chr11:14649105-14649397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
20, 254
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chr11:39462824-39462535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chr11:52690321-52690608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 64
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chr11:55334119-55333825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chr11:83926236-83925964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chr11:84385436-84385722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 52
               

               
Conread position:
               
477-606
               

               
Cow position:
               
chr11:20823675-20823804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
477-616
               

               
Cow position:
               
chr11:46592864-46592728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
133, 18
               

               
Conread position:
               
477-633
               

               
Cow position:
               
chr11:65939659-65939815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
132, 61
               

               
Conread position:
               
477-645
               

               
Cow position:
               
chr11:32817612-32817781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
25, 122
               

               
Conread position:
               
477-645
               

               
Cow position:
               
chr11:64126413-64126246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
134, 11
               

               
Conread position:
               
477-661
               

               
Cow position:
               
chr11:17552879-17553061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
110, 18
               

               
Conread position:
               
477-673
               

               
Cow position:
               
chr11:40818430-40818619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 33
               

               
Conread position:
               
477-678
               

               
Cow position:
               
chr11:1160018-1159815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 158
               

               
Conread position:
               
477-678
               

               
Cow position:
               
chr11:81065850-81066047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
477-679
               

               
Cow position:
               
chr11:77241904-77241707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
477-680
               

               
Cow position:
               
chr11:36092716-36092916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
131, 74
               

               
Conread position:
               
477-684
               

               
Cow position:
               
chr11:1932176-1931958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 192
               

               
Conread position:
               
477-685
               

               
Cow position:
               
chr11:67537914-67538122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
103, 27
               

               
Conread position:
               
477-691
               

               
Cow position:
               
chr11:19549679-19549474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
134, 54
               

               
Conread position:
               
477-692
               

               
Cow position:
               
chr11:47412047-47411830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
15, 209
               

               
Conread position:
               
477-697
               

               
Cow position:
               
chr11:41123392-41123617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
477-698
               

               
Cow position:
               
chr11:18791856-18792085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
477-702
               

               
Cow position:
               
chr11:10563208-10562987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
134, 89
               

               
Conread position:
               
477-702
               

               
Cow position:
               
chr11:41238987-41239212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
13, 53
               

               
Conread position:
               
477-710
               

               
Cow position:
               
chr11:33414431-33414207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
19, 54
               

               
Conread position:
               
477-725
               

               
Cow position:
               
chr11:17889523-17889775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
477-725
               

               
Cow position:
               
chr11:76369328-76369567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
477-727
               

               
Cow position:
               
chr11:32353783-32354040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
119, 133
               

               
Conread position:
               
477-728
               

               
Cow position:
               
chr11:76890247-76889997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
477-729
               

               
Cow position:
               
chr11:36182895-36182642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
9, 66
               

               
Conread position:
               
477-731
               

               
Cow position:
               
chr11:4221519-4221269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
187, 25
               

               
Conread position:
               
477-748
               

               
Cow position:
               
chr11:62620580-62620309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 104
               

               
Conread position:
               
477-749
               

               
Cow position:
               
chr11:34646797-34646521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
477-753
               

               
Cow position:
               
chr11:21893946-21894227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
105, 189
               

               
Conread position:
               
477-753
               

               
Cow position:
               
chr11:36194499-36194224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
477-762
               

               
Cow position:
               
chr11:46747657-46747944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 12
               

               
Conread position:
               
477-763
               

               
Cow position:
               
chr11:8988024-8988307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 95
               

               
Conread position:
               
477-764
               

               
Cow position:
               
chr11:1380882-1380593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 268
               

               
Conread position:
               
477-764
               

               
Cow position:
               
chr11:27404868-27405153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
91, 155
               

               
Conread position:
               
477-764
               

               
Cow position:
               
chr11:41133879-41134146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
137, 17
               

               
Conread position:
               
477-766
               

               
Cow position:
               
chr11:15772513-15772798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 12
               

               
Conread position:
               
477-769
               

               
Cow position:
               
chr11:439448-439751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 256
               

               
Conread position:
               
477-769
               

               
Cow position:
               
chr11:7013526-7013830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
477-769
               

               
Cow position:
               
chr11:30830423-30830702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
135, 18
               

               
Conread position:
               
477-769
               

               
Cow position:
               
chr11:33347996-33348270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
478-579
               

               
Cow position:
               
chr11:65842628-65842730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
478-610
               

               
Cow position:
               
chr11:28092656-28092521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
478-654
               

               
Cow position:
               
chr11:11483522-11483338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
99, 28
               

               
Conread position:
               
478-656
               

               
Cow position:
               
chr11:62102244-62102423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
478-656
               

               
Cow position:
               
chr11:75915186-75915018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
133, 17
               

               
Conread position:
               
478-661
               

               
Cow position:
               
chr11:35921994-35922178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
478-675
               

               
Cow position:
               
chr11:44176795-44176602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
133, 61
               

               
Conread position:
               
478-681
               

               
Cow position:
               
chr11:38226446-38226242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
13, 121
               

               
Conread position:
               
478-689
               

               
Cow position:
               
chr11:67172510-67172708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
132, 24
               

               
Conread position:
               
478-691
               

               
Cow position:
               
chr11:6258600-6258826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
478-712
               

               
Cow position:
               
chr11:6395956-6395724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
478-716
               

               
Cow position:
               
chr11:53717588-53717842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 54
               

               
Conread position:
               
478-722
               

               
Cow position:
               
chr11:2907332-2907564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
132, 50
               

               
Conread position:
               
478-722
               

               
Cow position:
               
chr11:5218959-5219204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
478-722
               

               
Cow position:
               
chr11:64107319-64107555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
133, 17
               

               
Conread position:
               
478-728
               

               
Cow position:
               
chr11:5328987-5328732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
133, 145
               

               
Conread position:
               
478-757
               

               
Cow position:
               
chr11:36978011-36977731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
12, 188
               

               
Conread position:
               
478-758
               

               
Cow position:
               
chr11:78380868-78381134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
133, 24
               

               
Conread position:
               
478-764
               

               
Cow position:
               
chr11:19591793-19592072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
478-764
               

               
Cow position:
               
chr11:31413656-31413372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 17
               

               
Conread position:
               
478-764
               

               
Cow position:
               
chr11:53817054-53816777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 6
               

               
Conread position:
               
478-769
               

               
Cow position:
               
chr11:4323569-4323271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
12, 97
               

               
Conread position:
               
478-769
               

               
Cow position:
               
chr11:17508349-17508645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
478-769
               

               
Cow position:
               
chr11:30370300-30370021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
478-769
               

               
Cow position:
               
chr11:49210615-49210929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
98, 125
               

               
Conread position:
               
478-769
               

               
Cow position:
               
chr11:62964698-62964403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 157
               

               
Conread position:
               
478-769
               

               
Cow position:
               
chr11:63433866-63434142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
478-769
               

               
Cow position:
               
chr11:65607491-65607777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
479-600
               

               
Cow position:
               
chr11:63196497-63196372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
479-612
               

               
Cow position:
               
chr11:63547020-63546891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
479-642
               

               
Cow position:
               
chr11:38656983-38657145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
132, 33
               

               
Conread position:
               
479-653
               

               
Cow position:
               
chr11:64607045-64607230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
18, 5
               

               
Conread position:
               
479-661
               

               
Cow position:
               
chr11:30986835-30986658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
131, 22
               

               
Conread position:
               
479-667
               

               
Cow position:
               
chr11:86664579-86664768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 151
               

               
Conread position:
               
479-672
               

               
Cow position:
               
chr11:31866780-31866590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
479-674
               

               
Cow position:
               
chr11:49486990-49486785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
479-680
               

               
Cow position:
               
chr11:77227731-77227539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
119, 85
               

               
Conread position:
               
479-680
               

               
Cow position:
               
chr11:80007863-80008067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
102, 22
               

               
Conread position:
               
479-704
               

               
Cow position:
               
chr11:54428821-54428596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
132, 200
               

               
Conread position:
               
479-710
               

               
Cow position:
               
chr11:45619551-45619323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
132, 100
               

               
Conread position:
               
479-711
               

               
Cow position:
               
chr11:30894800-30895034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 102
               

               
Conread position:
               
479-713
               

               
Cow position:
               
chr11:70304278-70304039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 215
               

               
Conread position:
               
479-714
               

               
Cow position:
               
chr11:15504311-15504080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
479-714
               

               
Cow position:
               
chr11:81300419-81300654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
17, 97
               

               
Conread position:
               
479-722
               

               
Cow position:
               
chr11:4151147-4150914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
479-741
               

               
Cow position:
               
chr11:61675665-61675407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
134, 89
               

               
Conread position:
               
479-742
               

               
Cow position:
               
chr11:17990037-17990300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
479-763
               

               
Cow position:
               
chr11:36112610-36112345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
133, 50
               

               
Conread position:
               
479-764
               

               
Cow position:
               
chr11:23251398-23251673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
135, 56
               

               
Conread position:
               
479-764
               

               
Cow position:
               
chr11:30476196-30475921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
132, 50
               

               
Conread position:
               
479-764
               

               
Cow position:
               
chr11:64105194-64104915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
252, 100
               

               
Conread position:
               
479-769
               

               
Cow position:
               
chr11:33286753-33287044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
17, 256
               

               
Conread position:
               
479-769
               

               
Cow position:
               
chr11:36914363-36914654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 261
               

               
Conread position:
               
479-769
               

               
Cow position:
               
chr11:64009928-64009633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
480-670
               

               
Cow position:
               
chr11:68570182-68570370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
480-678
               

               
Cow position:
               
chr11:10066545-10066351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
109, 8
               

               
Conread position:
               
480-697
               

               
Cow position:
               
chr11:9699054-9699261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
22, 87
               

               
Conread position:
               
480-721
               

               
Cow position:
               
chr11:36521080-36520834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 111
               

               
Conread position:
               
480-722
               

               
Cow position:
               
chr11:80616424-80616202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
46, 29
               

               
Conread position:
               
480-723
               

               
Cow position:
               
chr11:17559315-17559092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
133, 76
               

               
Conread position:
               
481-601
               

               
Cow position:
               
chr11:66896486-66896603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
481-644
               

               
Cow position:
               
chr11:55124103-55123941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
481-645
               

               
Cow position:
               
chr11:12742296-12742455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
481-645
               

               
Cow position:
               
chr11:17369724-17369566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
481-672
               

               
Cow position:
               
chr11:71814899-71814715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
133, 20
               

               
Conread position:
               
481-680
               

               
Cow position:
               
chr11:4436962-4436748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
481-725
               

               
Cow position:
               
chr11:37989424-37989664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
482-645
               

               
Cow position:
               
chr11:8828208-8828041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
482-729
               

               
Cow position:
               
chr11:30964539-30964298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
130, 19
               

               
Conread position:
               
482-754
               

               
Cow position:
               
chr11:20238875-20238600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
7, 102
               

               
Conread position:
               
482-769
               

               
Cow position:
               
chr11:9464036-9463748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 173
               

               
Conread position:
               
483-636
               

               
Cow position:
               
chr11:6258888-6259042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
483-636
               

               
Cow position:
               
chr11:8474576-8474421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
483-675
               

               
Cow position:
               
chr11:3208132-3207935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
483-693
               

               
Cow position:
               
chr11:25604153-25603935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
483-723
               

               
Cow position:
               
chr11:64101970-64101733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
483-725
               

               
Cow position:
               
chr11:85723891-85723653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
483-748
               

               
Cow position:
               
chr11:689464-689726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
484-582
               

               
Cow position:
               
chr11:21399134-21399035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
484-593
               

               
Cow position:
               
chr11:72568270-72568379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
484-600
               

               
Cow position:
               
chr11:55830032-55830147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
484-606
               

               
Cow position:
               
chr11:68909338-68909460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
484-616
               

               
Cow position:
               
chr11:31525461-31525587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
484-619
               

               
Cow position:
               
chr11:85262712-85262578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
122, 59
               

               
Conread position:
               
484-637
               

               
Cow position:
               
chr11:63977251-63977101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
128, 89
               

               
Conread position:
               
484-640
               

               
Cow position:
               
chr11:53460894-53460737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
115, 106
               

               
Conread position:
               
484-645
               

               
Cow position:
               
chr11:63491215-63491053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
484-645
               

               
Cow position:
               
chr11:70821240-70821080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
484-645
               

               
Cow position:
               
chr11:81340348-81340505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
484-647
               

               
Cow position:
               
chr11:1265347-1265510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
127, 20
               

               
Conread position:
               
484-661
               

               
Cow position:
               
chr11:3175865-3175693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
484-661
               

               
Cow position:
               
chr11:8421931-8422098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
128, 17
               

               
Conread position:
               
484-662
               

               
Cow position:
               
chr11:46010064-46010235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
484-664
               

               
Cow position:
               
chr11:30647335-30647155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 119
               

               
Conread position:
               
484-665
               

               
Cow position:
               
chr11:81175794-81175611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
128, 102
               

               
Conread position:
               
484-666
               

               
Cow position:
               
chr11:15591284-15591460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
128, 89
               

               
Conread position:
               
484-666
               

               
Cow position:
               
chr11:53651834-53651655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
484-667
               

               
Cow position:
               
chr11:35732886-35733070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
8, 94
               

               
Conread position:
               
484-668
               

               
Cow position:
               
chr11:74839798-74839623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
484-669
               

               
Cow position:
               
chr11:69676161-69676341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
484-673
               

               
Cow position:
               
chr11:69120578-69120767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 173
               

               
Conread position:
               
484-674
               

               
Cow position:
               
chr11:19147946-19148130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
484-675
               

               
Cow position:
               
chr11:63849754-63849946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
484-676
               

               
Cow position:
               
chr11:26442308-26442500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
484-676
               

               
Cow position:
               
chr11:49192259-49192453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
111, 190
               

               
Conread position:
               
484-676
               

               
Cow position:
               
chr11:57285512-57285699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
484-677
               

               
Cow position:
               
chr11:34778248-34778440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
484-678
               

               
Cow position:
               
chr11:33374163-33373968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
484-679
               

               
Cow position:
               
chr11:44620149-44619956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
128, 44
               

               
Conread position:
               
484-680
               

               
Cow position:
               
chr11:35805107-35804909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
484-680
               

               
Cow position:
               
chr11:42206610-42206422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
128, 17
               

               
Conread position:
               
484-680
               

               
Cow position:
               
chr11:46499187-46499011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
127, 60
               

               
Conread position:
               
484-681
               

               
Cow position:
               
chr11:23278769-23278964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
484-685
               

               
Cow position:
               
chr11:36136303-36136103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
108, 18
               

               
Conread position:
               
484-687
               

               
Cow position:
               
chr11:7571817-7571618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
7, 104
               

               
Conread position:
               
484-693
               

               
Cow position:
               
chr11:1980069-1980280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
484-694
               

               
Cow position:
               
chr11:58048527-58048318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 102
               

               
Conread position:
               
484-696
               

               
Cow position:
               
chr11:37099978-37100184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
484-705
               

               
Cow position:
               
chr11:47784976-47784750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
484-706
               

               
Cow position:
               
chr11:32782679-32782909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
484-707
               

               
Cow position:
               
chr11:63165456-63165673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
484-708
               

               
Cow position:
               
chr11:20205664-20205879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
484-709
               

               
Cow position:
               
chr11:3920105-3920332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
12, 167
               

               
Conread position:
               
484-709
               

               
Cow position:
               
chr11:40516918-40517144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
12, 174
               

               
Conread position:
               
484-710
               

               
Cow position:
               
chr11:17638322-17638564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
484-711
               

               
Cow position:
               
chr11:3896504-3896729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
111, 17
               

               
Conread position:
               
484-711
               

               
Cow position:
               
chr11:35769084-35768855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
12, 112
               

               
Conread position:
               
484-715
               

               
Cow position:
               
chr11:32260728-32260500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
12, 137
               

               
Conread position:
               
484-718
               

               
Cow position:
               
chr11:4225279-4225061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
128, 24
               

               
Conread position:
               
484-724
               

               
Cow position:
               
chr11:37435790-37436033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
484-725
               

               
Cow position:
               
chr11:62811493-62811253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
484-740
               

               
Cow position:
               
chr11:62230385-62230116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
484-757
               

               
Cow position:
               
chr11:57503677-57503407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
15, 82
               

               
Conread position:
               
484-760
               

               
Cow position:
               
chr11:48233035-48232745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
74, 44
               

               
Conread position:
               
484-761
               

               
Cow position:
               
chr11:73796973-73797253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
142, 18
               

               
Conread position:
               
484-763
               

               
Cow position:
               
chr11:25791497-25791771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 208
               

               
Conread position:
               
484-763
               

               
Cow position:
               
chr11:30165707-30165431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 213
               

               
Conread position:
               
484-763
               

               
Cow position:
               
chr11:63998896-63999170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
128, 17
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr11:4429928-4430209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 77
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr11:6245517-6245241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr11:11125861-11125581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr11:26117543-26117801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr11:45631583-45631843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr11:63919871-63920130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
127, 62
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chr11:7460433-7460701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
6, 33
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chr11:21508206-21507917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chr11:49057579-49057316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
128, 73
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chr11:61203367-61203078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 80
               

               
Conread position:
               
484-772
               

               
Cow position:
               
chr11:27248686-27248403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
485-599
               

               
Cow position:
               
chr11:47904430-47904318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
485-620
               

               
Cow position:
               
chr11:28850444-28850309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
485-642
               

               
Cow position:
               
chr11:26823308-26823148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
485-659
               

               
Cow position:
               
chr11:82732954-82733128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 93
               

               
Conread position:
               
485-669
               

               
Cow position:
               
chr11:30485852-30485663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
485-685
               

               
Cow position:
               
chr11:9279628-9279428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
9, 107
               

               
Conread position:
               
485-707
               

               
Cow position:
               
chr11:69168783-69168559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
485-714
               

               
Cow position:
               
chr11:27343468-27343237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
485-761
               

               
Cow position:
               
chr11:38334716-38334446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 68
               

               
Conread position:
               
485-769
               

               
Cow position:
               
chr11:35153624-35153911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 98
               

               
Conread position:
               
485-769
               

               
Cow position:
               
chr11:63435718-63435431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 180
               

               
Conread position:
               
485-769
               

               
Cow position:
               
chr11:68770557-68770276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
485-769
               

               
Cow position:
               
chr11:80923131-80923410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
107, 43
               

               
Conread position:
               
486-608
               

               
Cow position:
               
chr11:30111807-30111678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
486-645
               

               
Cow position:
               
chr11:35848948-35849102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
486-680
               

               
Cow position:
               
chr11:9836261-9836456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
486-762
               

               
Cow position:
               
chr11:19946615-19946355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
486-772
               

               
Cow position:
               
chr11:6202650-6202357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 253
               

               
Conread position:
               
487-672
               

               
Cow position:
               
chr11:7427743-7427932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
124, 14
               
UCSC Genome Browser

               
Conread position:
               
487-677
               

               
Cow position:
               
chr11:68829811-68829623 (view  custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
93, 14
               
UCSC Genome Browser

               
               
               
Conread position:
487-678

               
               
               
Cow position:
chr11:84758018-84757835 (view  custom track)

               
               
               
Alignm length:
195

               
               
               
Alignm identity:
149

               
               
               
Alignm E-value:
6e-30

               
               
               
Alignm gaps (pig, cow):
123, 47
UCSC Genome Browser

               
               
               
Conread position:
487-706

               
               
               
Cow position:
chr11:41043097-41043304 (view  custom track)

               
               
               
Alignm length:
221

               
               
               
Alignm identity:
157

               
               
               
Alignm E-value:
4e-27

               
               
               
Alignm gaps (pig, cow):
126, 98

               
               
               Conread position:487-707
               
               
               Cow position:chr11:74427871-74427651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:487-716
               
               
               Cow position:chr11:58173829-58173590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):23, 180

               
               
               Conread position:487-721
               
               
               Cow position:chr11:35693889-35693652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:487-723
               
               
               Cow position:chr11:21886022-21885791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):125, 15

               
               
               Conread position:487-724
               
               
               Cow position:chr11:866472-866249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:487-725
               
               
               Cow position:chr11:71854089-71854323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 87

               
               
               Conread position:487-727
               
               
               Cow position:chr11:39250156-39249925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):126, 15

               
               
               Conread position:487-731
               
               
               Cow position:chr11:19657022-19657272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):124, 96

               
               
               Conread position:487-761
               
               
               Cow position:chr11:6423205-6423481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):124, 96

               
               
               Conread position:487-764
               
               
               Cow position:chr11:30808405-30808683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):127, 8

               
               
               Conread position:487-764
               
               
               Cow position:chr11:48429310-48429025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:487-772
               
               
               Cow position:chr11:66041465-66041183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):124, 82

               
               
               Conread position:488-645
               
               
               Cow position:chr11:30597227-30597063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:488-680
               
               
               Cow position:chr11:58186064-58185883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:488-693
               
               
               Cow position:chr11:60296930-60296718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 179

               
               
               Conread position:488-717
               
               
               Cow position:chr11:15382305-15382539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:488-750
               
               
               Cow position:chr11:29699495-29699769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 207

               
               
               Conread position:488-760
               
               
               Cow position:chr11:38236437-38236174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 54

               
               
               Conread position:488-763
               
               
               Cow position:chr11:30708695-30708424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:488-764
               
               
               Cow position:chr11:17036341-17036611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:488-766
               
               
               Cow position:chr11:40792503-40792791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:488-769
               
               
               Cow position:chr11:46746828-46746545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):126, 64

               
               
               Conread position:488-769
               
               
               Cow position:chr11:57874000-57873743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:488-769
               
               
               Cow position:chr11:77705943-77705669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:489-574
               
               
               Cow position:chr11:46335041-46334956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:79
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:489-588
               
               
               Cow position:chr11:59744187-59744088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:489-611
               
               
               Cow position:chr11:22720187-22720060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:489-614
               
               
               Cow position:chr11:22102567-22102691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:489-616
               
               
               Cow position:chr11:70273652-70273525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):122, 37

               
               
               Conread position:489-641
               
               
               Cow position:chr11:81170221-81170062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:489-644
               
               
               Cow position:chr11:6429561-6429721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:489-645
               
               
               Cow position:chr11:14492376-14492535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:489-645
               
               
               Cow position:chr11:42837209-42837051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 103

               
               
               Conread position:489-648
               
               
               Cow position:chr11:7928868-7928705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:489-651
               
               
               Cow position:chr11:18574663-18574826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:489-652
               
               
               Cow position:chr11:51683407-51683244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 103

               
               
               Conread position:489-660
               
               
               Cow position:chr11:30857226-30857058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):121, 74

               
               
               Conread position:489-660
               
               
               Cow position:chr11:63695652-63695825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:489-666
               
               
               Cow position:chr11:9527836-9528014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:489-667
               
               
               Cow position:chr11:59471295-59471115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:489-675
               
               
               Cow position:chr11:84823406-84823594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:489-676
               
               
               Cow position:chr11:74152557-74152750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:489-679
               
               
               Cow position:chr11:2484605-2484793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 32

               
               
               Conread position:489-679
               
               
               Cow position:chr11:41278378-41278187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:489-680
               
               
               Cow position:chr11:1922087-1922277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:489-680
               
               
               Cow position:chr11:36976565-36976374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):122, 158

               
               
               Conread position:489-684
               
               
               Cow position:chr11:75749656-75749476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):123, 45

               
               
               Conread position:489-687
               
               
               Cow position:chr11:3992102-3991903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:489-690
               
               
               Cow position:chr11:1485043-1485236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 76

               
               
               Conread position:489-692
               
               
               Cow position:chr11:65807288-65807489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:489-693
               
               
               Cow position:chr11:43627126-43627331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:489-694
               
               
               Cow position:chr11:35182796-35183002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:489-696
               
               
               Cow position:chr11:68326671-68326879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:489-697
               
               
               Cow position:chr11:1952770-1952561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:489-697
               
               
               Cow position:chr11:51846488-51846281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):124, 79

               
               
               Conread position:489-699
               
               
               Cow position:chr11:46784654-46784456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:489-701
               
               
               Cow position:chr11:25783906-25783692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:489-703
               
               
               Cow position:chr11:45553663-45553443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:489-703
               
               
               Cow position:chr11:72791546-72791760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:489-706
               
               
               Cow position:chr11:22874661-22874443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:489-707
               
               
               Cow position:chr11:25745499-25745281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):122, 174

               
               
               Conread position:489-709
               
               
               Cow position:chr11:2900524-2900749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:489-711
               
               
               Cow position:chr11:35212980-35213198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 46

               
               
               Conread position:489-711
               
               
               Cow position:chr11:55972740-55972962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:489-711
               
               
               Cow position:chr11:67614734-67614952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:489-714
               
               
               Cow position:chr11:9234034-9234260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:489-714
               
               
               Cow position:chr11:19118791-19119016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):123, 158

               
               
               Conread position:489-714
               
               
               Cow position:chr11:25783655-25783440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:489-714
               
               
               Cow position:chr11:33293588-33293812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 129

               
               
               Conread position:489-714
               
               
               Cow position:chr11:35924047-35923821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:489-714
               
               
               Cow position:chr11:36218482-36218259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):76, 66

               
               
               Conread position:489-714
               
               
               Cow position:chr11:63975325-63975096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:489-714
               
               
               Cow position:chr11:70951058-70950837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:489-721
               
               
               Cow position:chr11:45671190-45671407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:489-722
               
               
               Cow position:chr11:32710705-32710473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):131, 13

               
               
               Conread position:489-722
               
               
               Cow position:chr11:46922696-46922927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 81

               
               
               Conread position:489-723
               
               
               Cow position:chr11:35444236-35443998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:489-725
               
               
               Cow position:chr11:17321859-17321603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):12, 180

               
               
               Conread position:489-725
               
               
               Cow position:chr11:27461920-27462142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:489-725
               
               
               Cow position:chr11:66325916-66326158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:489-728
               
               
               Cow position:chr11:14378633-14378392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:489-728
               
               
               Cow position:chr11:30867366-30867136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):125, 12

               
               
               Conread position:489-728
               
               
               Cow position:chr11:45700682-45700438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 171

               
               
               Conread position:489-729
               
               
               Cow position:chr11:31526071-31525827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:489-729
               
               
               Cow position:chr11:59903092-59902840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:489-729
               
               
               Cow position:chr11:81138403-81138161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 153

               
               
               Conread position:489-740
               
               
               Cow position:chr11:287139-287395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:489-740
               
               
               Cow position:chr11:33349511-33349762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:489-741
               
               
               Cow position:chr11:83357587-83357335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):122, 175

               
               
               Conread position:489-749
               
               
               Cow position:chr11:17227458-17227718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):8, 70

               
               
               Conread position:489-752
               
               
               Cow position:chr11:37778627-37778902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:489-754
               
               
               Cow position:chr11:35564701-35564434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:489-755
               
               
               Cow position:chr11:47837511-47837245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):13, 41

               
               
               Conread position:489-757
               
               
               Cow position:chr11:77238322-77238058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):125, 31

               
               
               Conread position:489-763
               
               
               Cow position:chr11:27719147-27719402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:489-763
               
               
               Cow position:chr11:83398099-83397825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 244

               
               
               Conread position:489-764
               
               
               Cow position:chr11:10095534-10095264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 97

               
               
               Conread position:489-764
               
               
               Cow position:chr11:17676184-17676452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):125, 89

               
               
               Conread position:489-764
               
               
               Cow position:chr11:25620199-25620481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 82

               
               
               Conread position:489-764
               
               
               Cow position:chr11:41293613-41293899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):70, 255

               
               
               Conread position:489-764
               
               
               Cow position:chr11:41603510-41603771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):121, 66

               
               
               Conread position:489-764
               
               
               Cow position:chr11:49153130-49152870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:489-764
               
               
               Cow position:chr11:50472509-50472236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 203

               
               
               Conread position:489-764
               
               
               Cow position:chr11:61526269-61525987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:489-767
               
               
               Cow position:chr11:30764683-30764401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):122, 247

               
               
               Conread position:489-767
               
               
               Cow position:chr11:40459296-40459027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 35

               
               
               Conread position:489-768
               
               
               Cow position:chr11:18425048-18425327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 254

               
               
               Conread position:489-769
               
               
               Cow position:chr11:3720446-3720167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):122, 175

               
               
               Conread position:489-769
               
               
               Cow position:chr11:3726481-3726202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:489-769
               
               
               Cow position:chr11:6643005-6642722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 175

               
               
               Conread position:489-769
               
               
               Cow position:chr11:7385625-7385351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 68

               
               
               Conread position:489-769
               
               
               Cow position:chr11:7458089-7458370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 231

               
               
               Conread position:489-769
               
               
               Cow position:chr11:20684379-20684660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:489-769
               
               
               Cow position:chr11:37804361-37804642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:489-769
               
               
               Cow position:chr11:42083644-42083386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 74

               
               
               Conread position:489-769
               
               
               Cow position:chr11:67931300-67931577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):122, 159

               
               
               Conread position:489-769
               
               
               Cow position:chr11:71492673-71492941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:489-779
               
               
               Cow position:chr11:1067248-1067541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:490-622
               
               
               Cow position:chr11:14447699-14447568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):122, 19

               
               
               Conread position:490-630
               
               
               Cow position:chr11:53512317-53512173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:490-632
               
               
               Cow position:chr11:68592209-68592066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:490-635
               
               
               Cow position:chr11:70634884-70634732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:490-658
               
               
               Cow position:chr11:4390091-4389926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:490-677
               
               
               Cow position:chr11:4363727-4363908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):121, 26

               
               
               Conread position:490-686
               
               
               Cow position:chr11:66685722-66685911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:490-690
               
               
               Cow position:chr11:85723388-85723187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:490-697
               
               
               Cow position:chr11:77208275-77208060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:490-698
               
               
               Cow position:chr11:62125675-62125879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:490-706
               
               
               Cow position:chr11:15017248-15017031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:490-712
               
               
               Cow position:chr11:63382009-63382222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:490-713
               
               
               Cow position:chr11:30688345-30688579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:490-714
               
               
               Cow position:chr11:58594196-58594421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:490-714
               
               
               Cow position:chr11:85571616-85571838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):121, 41

               
               
               Conread position:490-717
               
               
               Cow position:chr11:19578832-19579051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:490-722
               
               
               Cow position:chr11:41213242-41213001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:490-729
               
               
               Cow position:chr11:34747698-34747469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):121, 170

               
               
               Conread position:490-729
               
               
               Cow position:chr11:83043177-83043411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):120, 75

               
               
               Conread position:490-730
               
               
               Cow position:chr11:3404996-3405238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):124, 60

               
               
               Conread position:490-744
               
               
               Cow position:chr11:11533745-11533993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 50

               
               
               Conread position:490-748
               
               
               Cow position:chr11:30638762-30639013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 89

               
               
               Conread position:490-749
               
               
               Cow position:chr11:15339245-15338997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 39

               
               
               Conread position:490-753
               
               
               Cow position:chr11:71111087-71110821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:490-760
               
               
               Cow position:chr11:64048581-64048328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:490-761
               
               
               Cow position:chr11:68841399-68841124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):121, 248

               
               
               Conread position:490-764
               
               
               Cow position:chr11:37918858-37919126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):45, 125

               
               
               Conread position:490-764
               
               
               Cow position:chr11:49872698-49872968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):102, 12

               
               
               Conread position:490-764
               
               
               Cow position:chr11:52380684-52380955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):120, 11

               
               
               Conread position:490-769
               
               
               Cow position:chr11:4732534-4732256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):124, 254

               
               
               Conread position:490-769
               
               
               Cow position:chr11:17831017-17831307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):72, 202

               
               
               Conread position:490-770
               
               
               Cow position:chr11:72871087-72870813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:491-661
               
               
               Cow position:chr11:63475485-63475653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):120, 9

               
               
               Conread position:491-661
               
               
               Cow position:chr11:69421516-69421693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):79, 154

               
               
               Conread position:491-671
               
               
               Cow position:chr11:38223604-38223778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:491-680
               
               
               Cow position:chr11:79548743-79548937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):11, 95

               
               
               Conread position:491-685
               
               
               Cow position:chr11:6581023-6580828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:491-688
               
               
               Cow position:chr11:84968554-84968368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):172, 40

               
               
               Conread position:491-692
               
               
               Cow position:chr11:55348411-55348209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:491-698
               
               
               Cow position:chr11:29482252-29482453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:491-699
               
               
               Cow position:chr11:60516344-60516551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):121, 64

               
               
               Conread position:491-702
               
               
               Cow position:chr11:9691196-9690983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):71, 10

               
               
               Conread position:491-707
               
               
               Cow position:chr11:73983802-73984029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:491-709
               
               
               Cow position:chr11:74380380-74380162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):120, 164

               
               
               Conread position:491-712
               
               
               Cow position:chr11:30494176-30493965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:491-712
               
               
               Cow position:chr11:69417592-69417372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 179

               
               
               Conread position:491-722
               
               
               Cow position:chr11:258983-259212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):8, 87

               
               
               Conread position:491-722
               
               
               Cow position:chr11:35669779-35669993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):120, 10

               
               
               Conread position:491-725
               
               
               Cow position:chr11:35724159-35723926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):120, 197

               
               
               Conread position:491-729
               
               
               Cow position:chr11:30192365-30192127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 10

               
               
               Conread position:491-752
               
               
               Cow position:chr11:70459746-70459492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):116, 157

               
               
               Conread position:491-759
               
               
               Cow position:chr11:4636986-4637250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:491-764
               
               
               Cow position:chr11:45276960-45277227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:491-764
               
               
               Cow position:chr11:62482831-62482555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:491-764
               
               
               Cow position:chr11:68909665-68909933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 18

               
               
               Conread position:491-764
               
               
               Cow position:chr11:80564487-80564211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 116

               
               
               Conread position:491-766
               
               
               Cow position:chr11:9270548-9270809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:491-769
               
               
               Cow position:chr11:42291653-42291919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:491-769
               
               
               Cow position:chr11:57724634-57724909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):122, 226

               
               
               Conread position:491-769
               
               
               Cow position:chr11:58102568-58102863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:491-769
               
               
               Cow position:chr11:65495155-65495412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:491-769
               
               
               Cow position:chr11:66188131-66188409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:491-769
               
               
               Cow position:chr11:82940446-82940708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:491-770
               
               
               Cow position:chr11:48086105-48085828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:491-772
               
               
               Cow position:chr11:67600966-67600693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:492-603
               
               
               Cow position:chr11:81244074-81244185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:492-610
               
               
               Cow position:chr11:79467001-79467118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:492-643
               
               
               Cow position:chr11:69035348-69035196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:492-652
               
               
               Cow position:chr11:44016433-44016272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:492-655
               
               
               Cow position:chr11:25614615-25614788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:492-659
               
               
               Cow position:chr11:63484126-63483964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):120, 10

               
               
               Conread position:492-660
               
               
               Cow position:chr11:73638044-73637875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):7, 135

               
               
               Conread position:492-676
               
               
               Cow position:chr11:42498032-42497849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:492-685
               
               
               Cow position:chr11:42064037-42064229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:492-687
               
               
               Cow position:chr11:79869532-79869319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:492-693
               
               
               Cow position:chr11:58111756-58111967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:492-694
               
               
               Cow position:chr11:20117265-20117060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:492-703
               
               
               Cow position:chr11:85186340-85186550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:492-714
               
               
               Cow position:chr11:5417074-5416851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:492-721
               
               
               Cow position:chr11:75090031-75090259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:492-725
               
               
               Cow position:chr11:2339806-2339565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 233

               
               
               Conread position:492-725
               
               
               Cow position:chr11:47310796-47311028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):119, 195

               
               
               Conread position:492-726
               
               
               Cow position:chr11:9237660-9237891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):119, 48

               
               
               Conread position:492-728
               
               
               Cow position:chr11:36647515-36647300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:492-728
               
               
               Cow position:chr11:56311412-56311643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:492-729
               
               
               Cow position:chr11:32054997-32055237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 91

               
               
               Conread position:492-729
               
               
               Cow position:chr11:42884597-42884834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 155

               
               
               Conread position:492-744
               
               
               Cow position:chr11:32126804-32126543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:492-759
               
               
               Cow position:chr11:45283115-45282851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:492-764
               
               
               Cow position:chr11:19487291-19487563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):122, 244

               
               
               Conread position:492-764
               
               
               Cow position:chr11:21421750-21422016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 138

               
               
               Conread position:492-764
               
               
               Cow position:chr11:32693306-32693556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:492-764
               
               
               Cow position:chr11:79728484-79728750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):76, 48

               
               
               Conread position:492-766
               
               
               Cow position:chr11:31875277-31875008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 16

               
               
               Conread position:492-769
               
               
               Cow position:chr11:21843951-21844219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):120, 81

               
               
               Conread position:492-769
               
               
               Cow position:chr11:35347563-35347839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 236

               
               
               Conread position:492-772
               
               
               Cow position:chr11:55762044-55761781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):120, 18

               
               
               Conread position:492-772
               
               
               Cow position:chr11:75285568-75285857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:492-785
               
               
               Cow position:chr11:51729462-51729182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 71

               
               
               Conread position:493-601
               
               
               Cow position:chr11:56901878-56901986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):95, 9

               
               
               Conread position:493-666
               
               
               Cow position:chr11:54872574-54872745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):119, 76

               
               
               Conread position:493-668
               
               
               Cow position:chr11:37042160-37041984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 9

               
               
               Conread position:493-685
               
               
               Cow position:chr11:63498945-63499131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):118, 9

               
               
               Conread position:493-726
               
               
               Cow position:chr11:3908427-3908661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):120, 156

               
               
               Conread position:493-728
               
               
               Cow position:chr11:62789312-62789084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):119, 8

               
               
               Conread position:493-749
               
               
               Cow position:chr11:7560187-7559931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):121, 9

               
               
               Conread position:493-761
               
               
               Cow position:chr11:17721613-17721883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):8, 89

               
               
               Conread position:493-764
               
               
               Cow position:chr11:18699057-18698796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):119, 81

               
               
               Conread position:494-659
               
               
               Cow position:chr11:37565055-37564895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):117, 71

               
               
               Conread position:494-661
               
               
               Cow position:chr11:71192158-71191990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 66

               
               
               Conread position:494-689
               
               
               Cow position:chr11:5176195-5176388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):116, 81

               
               
               Conread position:494-691
               
               
               Cow position:chr11:75557733-75557949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:494-708
               
               
               Cow position:chr11:70458230-70458014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):93, 106

               
               
               Conread position:494-709
               
               
               Cow position:chr11:55398965-55399176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 104

               
               
               Conread position:494-712
               
               
               Cow position:chr11:63695400-63695184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):117, 38

               
               
               Conread position:494-713
               
               
               Cow position:chr11:17900310-17900526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 61

               
               
               Conread position:494-714
               
               
               Cow position:chr11:68401987-68401768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):117, 42

               
               
               Conread position:494-722
               
               
               Cow position:chr11:40466937-40467167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:494-725
               
               
               Cow position:chr11:27907956-27907734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):218, 81

               
               
               Conread position:494-728
               
               
               Cow position:chr11:4436518-4436271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):118, 37

               
               
               Conread position:494-729
               
               
               Cow position:chr11:17083127-17083358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:494-764
               
               
               Cow position:chr11:62812766-62813033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:494-769
               
               
               Cow position:chr11:8584501-8584234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):220, 87

               
               
               Conread position:494-769
               
               
               Cow position:chr11:32881331-32881064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):117, 217

               
               
               Conread position:494-769
               
               
               Cow position:chr11:74316892-74316626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):118, 75

               
               
               Conread position:494-769
               
               
               Cow position:chr11:83032863-83032595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):118, 79

               
               
               Conread position:494-781
               
               
               Cow position:chr11:30721286-30720995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:495-601
               
               
               Cow position:chr11:10294575-10294468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:495-601
               
               
               Cow position:chr11:33345702-33345597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:495-627
               
               
               Cow position:chr11:80503977-80504109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 12

               
               
               Conread position:495-648
               
               
               Cow position:chr11:86925779-86925928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 20

               
               
               Conread position:495-657
               
               
               Cow position:chr11:34279921-34279766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:495-659
               
               
               Cow position:chr11:43641573-43641408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:495-667
               
               
               Cow position:chr11:32108503-32108675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):116, 98

               
               
               Conread position:495-697
               
               
               Cow position:chr11:41576688-41576884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):114, 56

               
               
               Conread position:495-705
               
               
               Cow position:chr11:79466407-79466187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:495-709
               
               
               Cow position:chr11:30209638-30209848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):116, 36

               
               
               Conread position:495-711
               
               
               Cow position:chr11:21728104-21728306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):117, 25

               
               
               Conread position:495-714
               
               
               Cow position:chr11:29916731-29916508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:495-720
               
               
               Cow position:chr11:46427222-46427447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):91, 33

               
               
               Conread position:495-721
               
               
               Cow position:chr11:38639284-38639072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):119, 79

               
               
               Conread position:495-722
               
               
               Cow position:chr11:6006494-6006265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):116, 84

               
               
               Conread position:495-729
               
               
               Cow position:chr11:53888464-53888684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):116, 146

               
               
               Conread position:495-740
               
               
               Cow position:chr11:18852089-18851849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:495-740
               
               
               Cow position:chr11:65762400-65762649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:495-748
               
               
               Cow position:chr11:48248014-48248282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 234

               
               
               Conread position:495-761
               
               
               Cow position:chr11:52297038-52297299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):117, 72

               
               
               Conread position:495-764
               
               
               Cow position:chr11:6633911-6633624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:495-764
               
               
               Cow position:chr11:17859968-17860235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:495-764
               
               
               Cow position:chr11:68904903-68905156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):113, 61

               
               
               Conread position:495-769
               
               
               Cow position:chr11:6194573-6194321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):116, 69

               
               
               Conread position:495-769
               
               
               Cow position:chr11:36286889-36286610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:495-769
               
               
               Cow position:chr11:43360602-43360869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):117, 91

               
               
               Conread position:495-769
               
               
               Cow position:chr11:76653206-76652932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):118, 244

               
               
               Conread position:495-772
               
               
               Cow position:chr11:49149231-49148950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 72

               
               
               Conread position:495-776
               
               
               Cow position:chr11:32398826-32398541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 130

               
               
               Conread position:495-781
               
               
               Cow position:chr11:70978550-70978829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:496-610
               
               
               Cow position:chr11:35801701-35801587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):94, 98

               
               
               Conread position:496-626
               
               
               Cow position:chr11:60488466-60488333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):73, 105

               
               
               Conread position:496-643
               
               
               Cow position:chr11:2830840-2830694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 77

               
               
               Conread position:496-653
               
               
               Cow position:chr11:15881236-15881393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):115, 39

               
               
               Conread position:496-660
               
               
               Cow position:chr11:67208433-67208273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):115, 46

               
               
               Conread position:496-679
               
               
               Cow position:chr11:40538733-40538552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):91, 70

               
               
               Conread position:496-680
               
               
               Cow position:chr11:30322310-30322492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):118, 57

               
               
               Conread position:496-684
               
               
               Cow position:chr11:79666078-79666265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:152
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):115, 34

               
               
               Conread position:496-685
               
               
               Cow position:chr11:5264280-5264092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 35

               
               
               Conread position:496-687
               
               
               Cow position:chr11:36300400-36300584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:496-695
               
               
               Cow position:chr11:86895556-86895362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):118, 79

               
               
               Conread position:496-696
               
               
               Cow position:chr11:27502519-27502717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:496-697
               
               
               Cow position:chr11:81041778-81041986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:496-712
               
               
               Cow position:chr11:31537264-31537471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):91, 112

               
               
               Conread position:496-722
               
               
               Cow position:chr11:35580445-35580218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):84, 96

               
               
               Conread position:496-730
               
               
               Cow position:chr11:31417607-31417369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:496-730
               
               
               Cow position:chr11:43524794-43524557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:496-748
               
               
               Cow position:chr11:5231463-5231718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):115, 94

               
               
               Conread position:496-764
               
               
               Cow position:chr11:3715423-3715154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:496-764
               
               
               Cow position:chr11:3740148-3739871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 244

               
               
               Conread position:496-764
               
               
               Cow position:chr11:6233694-6233961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 235

               
               
               Conread position:496-764
               
               
               Cow position:chr11:28367895-28367626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:496-764
               
               
               Cow position:chr11:50152629-50152897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):116, 96

               
               
               Conread position:496-764
               
               
               Cow position:chr11:68913327-68913061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 233

               
               
               Conread position:496-764
               
               
               Cow position:chr11:77546580-77546336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):118, 38

               
               
               Conread position:496-769
               
               
               Cow position:chr11:375643-375368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:496-769
               
               
               Cow position:chr11:16906847-16907130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):65, 186

               
               
               Conread position:496-769
               
               
               Cow position:chr11:41985864-41986130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 78

               
               
               Conread position:496-769
               
               
               Cow position:chr11:48932405-48932671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):89, 114

               
               
               Conread position:496-769
               
               
               Cow position:chr11:51687552-51687811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):115, 41

               
               
               Conread position:496-769
               
               
               Cow position:chr11:65157221-65157497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 209

               
               
               Conread position:496-769
               
               
               Cow position:chr11:83033046-83033323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:497-691
               
               
               Cow position:chr11:17074045-17074229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:497-714
               
               
               Cow position:chr11:12076902-12077119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:497-727
               
               
               Cow position:chr11:2639461-2639707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:497-764
               
               
               Cow position:chr11:80412826-80413093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 179

               
               
               Conread position:497-769
               
               
               Cow position:chr11:73573830-73573560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):114, 220

               
               
               Conread position:497-776
               
               
               Cow position:chr11:85191435-85191702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:498-731
               
               
               Cow position:chr11:36217518-36217750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):115, 101

               
               
               Conread position:498-764
               
               
               Cow position:chr11:42296445-42296699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:499-668
               
               
               Cow position:chr11:72401557-72401720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):113, 17

               
               
               Conread position:499-678
               
               
               Cow position:chr11:5935936-5936113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):112, 25

               
               
               Conread position:499-687
               
               
               Cow position:chr11:63485113-63484932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):112, 68

               
               
               Conread position:499-693
               
               
               Cow position:chr11:66104212-66104407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 74

               
               
               Conread position:499-725
               
               
               Cow position:chr11:62754117-62754363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:499-764
               
               
               Cow position:chr11:46999167-46998903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):86, 167

               
               
               Conread position:499-764
               
               
               Cow position:chr11:68112078-68112346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):108, 84

               
               
               Conread position:499-767
               
               
               Cow position:chr11:41313481-41313741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 36

               
               
               Conread position:500-684
               
               
               Cow position:chr11:64022930-64023103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:500-718
               
               
               Cow position:chr11:72292741-72292516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 62

               
               
               Conread position:501-623
               
               
               Cow position:chr11:43594249-43594371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):111, 91

               
               
               Conread position:501-655
               
               
               Cow position:chr11:5559462-5559307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:501-656
               
               
               Cow position:chr11:56348652-56348806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 28

               
               
               Conread position:501-659
               
               
               Cow position:chr11:83028171-83028015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):71, 39

               
               
               Conread position:501-661
               
               
               Cow position:chr11:78672852-78672690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:501-675
               
               
               Cow position:chr11:4621256-4621425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):113, 73

               
               
               Conread position:501-680
               
               
               Cow position:chr11:76248225-76248050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:501-683
               
               
               Cow position:chr11:42065831-42065647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:501-687
               
               
               Cow position:chr11:15526286-15526107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):113, 29

               
               
               Conread position:501-688
               
               
               Cow position:chr11:36917586-36917784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):69, 136

               
               
               Conread position:501-689
               
               
               Cow position:chr11:63407873-63407691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):110, 41

               
               
               Conread position:501-691
               
               
               Cow position:chr11:47110435-47110242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):68, 173

               
               
               Conread position:501-695
               
               
               Cow position:chr11:20234865-20234670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:501-695
               
               
               Cow position:chr11:21124430-21124621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):111, 161

               
               
               Conread position:501-697
               
               
               Cow position:chr11:42084494-42084692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:501-711
               
               
               Cow position:chr11:18447322-18447522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):113, 76

               
               
               Conread position:501-725
               
               
               Cow position:chr11:35351854-35352083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 161

               
               
               Conread position:501-727
               
               
               Cow position:chr11:7500928-7500696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):111, 41

               
               
               Conread position:501-727
               
               
               Cow position:chr11:41215912-41215683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 42

               
               
               Conread position:501-728
               
               
               Cow position:chr11:6594050-6594299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 92

               
               
               Conread position:501-737
               
               
               Cow position:chr11:7314970-7315203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):112, 63

               
               
               Conread position:501-745
               
               
               Cow position:chr11:67615073-67615310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:501-758
               
               
               Cow position:chr11:19247026-19247275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 34

               
               
               Conread position:501-760
               
               
               Cow position:chr11:2327868-2327610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):58, 232

               
               
               Conread position:501-761
               
               
               Cow position:chr11:5217281-5217545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):81, 68

               
               
               Conread position:501-762
               
               
               Cow position:chr11:69307709-69307431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:501-763
               
               
               Cow position:chr11:48660109-48659851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):111, 56

               
               
               Conread position:501-763
               
               
               Cow position:chr11:75479844-75480108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):110, 8

               
               
               Conread position:501-764
               
               
               Cow position:chr11:4199453-4199191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 161

               
               
               Conread position:501-764
               
               
               Cow position:chr11:23271827-23272084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):109, 45

               
               
               Conread position:501-764
               
               
               Cow position:chr11:48544615-48544350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):173, 78

               
               
               Conread position:501-769
               
               
               Cow position:chr11:5486195-5485924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:501-769
               
               
               Cow position:chr11:51293232-51293499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):171, 111

               
               
               Conread position:501-773
               
               
               Cow position:chr11:33409087-33409351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:502-650
               
               
               Cow position:chr11:1842135-1841994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):110, 67

               
               
               Conread position:502-707
               
               
               Cow position:chr11:46245681-46245891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:502-714
               
               
               Cow position:chr11:78544463-78544250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:502-715
               
               
               Cow position:chr11:28675255-28675042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):111, 138

               
               
               Conread position:502-727
               
               
               Cow position:chr11:35980963-35981194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):109, 124

               
               
               Conread position:502-753
               
               
               Cow position:chr11:57608288-57608527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):112, 43

               
               
               Conread position:502-764
               
               
               Cow position:chr11:40608415-40608678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):70, 54

               
               
               Conread position:502-764
               
               
               Cow position:chr11:75178076-75177813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):80, 112

               
               
               Conread position:503-678
               
               
               Cow position:chr11:9176224-9176054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:503-693
               
               
               Cow position:chr11:68660437-68660623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):108, 14

               
               
               Conread position:503-725
               
               
               Cow position:chr11:67345482-67345698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):86, 141

               
               
               Conread position:503-728
               
               
               Cow position:chr11:5201469-5201703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:503-730
               
               
               Cow position:chr11:29786316-29786546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 220

               
               
               Conread position:503-762
               
               
               Cow position:chr11:4207488-4207232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:503-764
               
               
               Cow position:chr11:64029090-64029343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 87

               
               
               Conread position:504-706
               
               
               Cow position:chr11:5454518-5454727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:504-714
               
               
               Cow position:chr11:53649195-53649405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:504-722
               
               
               Cow position:chr11:132150-132371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):153, 108

               
               
               Conread position:504-764
               
               
               Cow position:chr11:70483675-70483940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 86

               
               
               Conread position:504-767
               
               
               Cow position:chr11:18543345-18543594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):106, 45

               
               
               Conread position:506-637
               
               
               Cow position:chr11:32584995-32584858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:506-674
               
               
               Cow position:chr11:15278844-15279006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:506-707
               
               
               Cow position:chr11:60486242-60486446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:506-711
               
               
               Cow position:chr11:8683904-8684111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:506-730
               
               
               Cow position:chr11:35109366-35109587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 22

               
               
               Conread position:506-762
               
               
               Cow position:chr11:22676286-22676036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):105, 122

               
               
               Conread position:507-645
               
               
               Cow position:chr11:2281150-2281289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:507-677
               
               
               Cow position:chr11:30600017-30600188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):78, 73

               
               
               Conread position:507-692
               
               
               Cow position:chr11:63849087-63849271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:507-696
               
               
               Cow position:chr11:50418791-50418979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 93

               
               
               Conread position:507-699
               
               
               Cow position:chr11:35149575-35149380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:507-728
               
               
               Cow position:chr11:8524945-8525162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 62

               
               
               Conread position:507-764
               
               
               Cow position:chr11:30728574-30728321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:507-764
               
               
               Cow position:chr11:36981738-36981480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:508-603
               
               
               Cow position:chr11:17221391-17221486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:508-624
               
               
               Cow position:chr11:67417981-67417865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 69

               
               
               Conread position:508-675
               
               
               Cow position:chr11:31069066-31068903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-697
               
               
               Cow position:chr11:5467253-5467061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):103, 82

               
               
               Conread position:508-711
               
               
               Cow position:chr11:15287617-15287413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:508-723
               
               
               Cow position:chr11:44017156-44016932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:508-725
               
               
               Cow position:chr11:18656394-18656169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:508-726
               
               
               Cow position:chr11:37514729-37514510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:508-728
               
               
               Cow position:chr11:60301805-60302008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):106, 37

               
               
               Conread position:508-763
               
               
               Cow position:chr11:63202077-63202328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 9

               
               
               Conread position:508-764
               
               
               Cow position:chr11:14875596-14875859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:508-764
               
               
               Cow position:chr11:53463114-53462862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):104, 71

               
               
               Conread position:508-764
               
               
               Cow position:chr11:73353895-73354135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):104, 73

               
               
               Conread position:508-767
               
               
               Cow position:chr11:69016149-69015887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:508-769
               
               
               Cow position:chr11:28993576-28993818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):102, 73

               
               
               Conread position:508-769
               
               
               Cow position:chr11:34144747-34145001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):55, 144

               
               
               Conread position:508-781
               
               
               Cow position:chr11:35926737-35927005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:509-639
               
               
               Cow position:chr11:80695070-80695201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:509-653
               
               
               Cow position:chr11:63258026-63258170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):102, 84

               
               
               Conread position:509-676
               
               
               Cow position:chr11:26343273-26343106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):102, 81

               
               
               Conread position:509-677
               
               
               Cow position:chr11:8457526-8457695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:509-679
               
               
               Cow position:chr11:17309571-17309404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 77

               
               
               Conread position:509-685
               
               
               Cow position:chr11:2836031-2835854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:147
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:509-685
               
               
               Cow position:chr11:60720283-60720460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:150
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:509-687
               
               
               Cow position:chr11:22884577-22884407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:509-692
               
               
               Cow position:chr11:27760689-27760506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:509-701
               
               
               Cow position:chr11:49207882-49207691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):102, 149

               
               
               Conread position:509-703
               
               
               Cow position:chr11:80586437-80586252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:509-709
               
               
               Cow position:chr11:8462176-8461976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 93

               
               
               Conread position:509-709
               
               
               Cow position:chr11:39271202-39271400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):59, 76

               
               
               Conread position:509-711
               
               
               Cow position:chr11:77319583-77319384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):105, 65

               
               
               Conread position:509-712
               
               
               Cow position:chr11:21173266-21173465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:509-714
               
               
               Cow position:chr11:72023-72222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:509-714
               
               
               Cow position:chr11:19755822-19755617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):102, 68

               
               
               Conread position:509-721
               
               
               Cow position:chr11:39554018-39554238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:509-721
               
               
               Cow position:chr11:56676096-56675877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 82

               
               
               Conread position:509-722
               
               
               Cow position:chr11:34467733-34467530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):101, 68

               
               
               Conread position:509-725
               
               
               Cow position:chr11:29677378-29677154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 77

               
               
               Conread position:509-725
               
               
               Cow position:chr11:81913552-81913766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:509-728
               
               
               Cow position:chr11:34644829-34644606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):73, 175

               
               
               Conread position:509-729
               
               
               Cow position:chr11:2917422-2917634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:509-729
               
               
               Cow position:chr11:19606765-19606529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:509-740
               
               
               Cow position:chr11:45872139-45872369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):102, 78

               
               
               Conread position:509-757
               
               
               Cow position:chr11:6296907-6297155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):104, 208

               
               
               Conread position:509-764
               
               
               Cow position:chr11:18910713-18910960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):105, 84

               
               
               Conread position:509-764
               
               
               Cow position:chr11:22977711-22977952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:509-764
               
               
               Cow position:chr11:48474880-48474622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 43

               
               
               Conread position:509-769
               
               
               Cow position:chr11:13042977-13043232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:509-769
               
               
               Cow position:chr11:47755209-47755470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):97, 175

               
               
               Conread position:509-769
               
               
               Cow position:chr11:81160052-81159793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):104, 85

               
               
               Conread position:509-769
               
               
               Cow position:chr11:82374041-82373783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):102, 125

               
               
               Conread position:509-771
               
               
               Cow position:chr11:36920407-36920668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:509-771
               
               
               Cow position:chr11:84890557-84890809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):103, 55

               
               
               Conread position:510-637
               
               
               Cow position:chr11:899606-899477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr11:55117613-55117457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:510-716
               
               
               Cow position:chr11:71345146-71345359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:510-726
               
               
               Cow position:chr11:48233347-48233561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):64, 7

               
               
               Conread position:510-761
               
               
               Cow position:chr11:29960462-29960217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:510-769
               
               
               Cow position:chr11:9221552-9221814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):58, 181

               
               
               Conread position:510-769
               
               
               Cow position:chr11:11994542-11994794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):86, 56

               
               
               Conread position:510-769
               
               
               Cow position:chr11:26535954-26535690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):101, 69

               
               
               Conread position:510-769
               
               
               Cow position:chr11:47772212-47772479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:510-779
               
               
               Cow position:chr11:27565486-27565241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:511-681
               
               
               Cow position:chr11:30654817-30654655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):94, 57

               
               
               Conread position:511-722
               
               
               Cow position:chr11:26632844-26633057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:511-725
               
               
               Cow position:chr11:46113083-46113290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:511-729
               
               
               Cow position:chr11:39854853-39855062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:511-764
               
               
               Cow position:chr11:4674275-4674526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:511-764
               
               
               Cow position:chr11:32199112-32198857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):168, 216

               
               
               Conread position:511-769
               
               
               Cow position:chr11:85703858-85703620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):101, 61

               
               
               Conread position:512-678
               
               
               Cow position:chr11:35960813-35960979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 75

               
               
               Conread position:512-712
               
               
               Cow position:chr11:64409134-64408945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):99, 61

               
               
               Conread position:512-763
               
               
               Cow position:chr11:32436513-32436251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:513-670
               
               
               Cow position:chr11:4411705-4411858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:513-692
               
               
               Cow position:chr11:42189294-42189473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 92

               
               
               Conread position:513-695
               
               
               Cow position:chr11:79707870-79707699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):99, 55

               
               
               Conread position:513-764
               
               
               Cow position:chr11:34121362-34121113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:513-764
               
               
               Cow position:chr11:84228556-84228794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 53

               
               
               Conread position:513-769
               
               
               Cow position:chr11:83066659-83066408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):60, 169

               
               
               Conread position:514-685
               
               
               Cow position:chr11:81406001-81406173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):97, 76

               
               
               Conread position:514-745
               
               
               Cow position:chr11:24602123-24601900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:514-764
               
               
               Cow position:chr11:24599232-24599471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):199, 14

               
               
               Conread position:515-726
               
               
               Cow position:chr11:3780250-3780463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:516-680
               
               
               Cow position:chr11:29779767-29779602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:516-732
               
               
               Cow position:chr11:35791656-35791875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:517-683
               
               
               Cow position:chr11:58472413-58472246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:517-722
               
               
               Cow position:chr11:11558335-11558131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):9, 66

               
               
               Conread position:517-764
               
               
               Cow position:chr11:18243781-18244019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):21, 98

               
               
               Conread position:517-769
               
               
               Cow position:chr11:61560460-61560715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 186

               
               
               Conread position:518-714
               
               
               Cow position:chr11:3703114-3702917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:519-763
               
               
               Cow position:chr11:38670851-38670603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 162

               
               
               Conread position:519-769
               
               
               Cow position:chr11:8544855-8545099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 159

               
               
               Conread position:519-771
               
               
               Cow position:chr11:30879831-30879589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:519-775
               
               
               Cow position:chr11:82289749-82289482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:520-714
               
               
               Cow position:chr11:54388063-54387873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:520-714
               
               
               Cow position:chr11:56499998-56499804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:520-764
               
               
               Cow position:chr11:39499515-39499272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 63

               
               
               Conread position:520-769
               
               
               Cow position:chr11:41281206-41280953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):92, 214

               
               
               Conread position:521-661
               
               
               Cow position:chr11:62081813-62081948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):89, 44

               
               
               Conread position:523-728
               
               
               Cow position:chr11:22319404-22319194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:524-696
               
               
               Cow position:chr11:35140066-35139892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:524-761
               
               
               Cow position:chr11:15062606-15062366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 222

               
               
               Conread position:525-741
               
               
               Cow position:chr11:52464560-52464348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:525-761
               
               
               Cow position:chr11:87155676-87155441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 149

               
               
               Conread position:525-764
               
               
               Cow position:chr11:17493638-17493395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):86, 28

               
               
               Conread position:527-722
               
               
               Cow position:chr11:34136394-34136202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:527-725
               
               
               Cow position:chr11:37425002-37425186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:527-728
               
               
               Cow position:chr11:4392193-4392401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:527-729
               
               
               Cow position:chr11:11469500-11469696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 56

               
               
               Conread position:527-754
               
               
               Cow position:chr11:45646440-45646666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:527-769
               
               
               Cow position:chr11:23385085-23385330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:528-674
               
               
               Cow position:chr11:17807809-17807956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:528-768
               
               
               Cow position:chr11:31410728-31410969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 58

               
               
               Conread position:528-769
               
               
               Cow position:chr11:49934591-49934823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:529-729
               
               
               Cow position:chr11:13162492-13162287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:529-760
               
               
               Cow position:chr11:13067512-13067749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:529-769
               
               
               Cow position:chr11:19232799-19233039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 210

               
               
               Conread position:529-781
               
               
               Cow position:chr11:68206695-68206941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):81, 50

               
               
               Conread position:531-764
               
               
               Cow position:chr11:23586789-23586554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:532-763
               
               
               Cow position:chr11:71868455-71868684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:533-688
               
               
               Cow position:chr11:6320223-6320376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:534-661
               
               
               Cow position:chr11:44859141-44859267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):77, 47

               
               
               Conread position:534-666
               
               
               Cow position:chr11:37490431-37490562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 47

               
               
               Conread position:534-695
               
               
               Cow position:chr11:41983012-41983181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:534-710
               
               
               Cow position:chr11:53853236-53853059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:534-727
               
               
               Cow position:chr11:63909509-63909710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 139

               
               
               Conread position:534-769
               
               
               Cow position:chr11:372559-372783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:534-769
               
               
               Cow position:chr11:67804891-67804667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:535-744
               
               
               Cow position:chr11:84977220-84977423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:536-772
               
               
               Cow position:chr11:34113406-34113174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:537-686
               
               
               Cow position:chr11:69624428-69624577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:540-764
               
               
               Cow position:chr11:59873063-59872850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:540-771
               
               
               Cow position:chr11:35708982-35709205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:541-769
               
               
               Cow position:chr11:56518170-56518395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 41

               
               
               Conread position:542-676
               
               
               Cow position:chr11:38202109-38201974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:544-763
               
               
               Cow position:chr11:76114777-76114571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:546-725
               
               
               Cow position:chr11:45849362-45849544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:548-675
               
               
               Cow position:chr11:3948846-3948717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:550-693
               
               
               Cow position:chr11:70639972-70639833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:552-714
               
               
               Cow position:chr11:30404697-30404530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:552-716
               
               
               Cow position:chr11:18608109-18608273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:553-775
               
               
               Cow position:chr11:76835496-76835722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):59, 222

               
               
               Conread position:554-764
               
               
               Cow position:chr11:48306220-48306427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:556-764
               
               
               Cow position:chr11:72333714-72333511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 147

               
               
               Conread position:557-683
               
               
               Cow position:chr11:65858207-65858080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:557-721
               
               
               Cow position:chr11:48512287-48512124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:557-762
               
               
               Cow position:chr11:18785752-18785951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:557-765
               
               
               Cow position:chr11:63917352-63917555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):58, 78

               
               
               Conread position:558-694
               
               
               Cow position:chr11:37335966-37336102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 111

               
               
               Conread position:558-762
               
               
               Cow position:chr11:36315049-36315254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 157

               
               
               Conread position:559-718
               
               
               Cow position:chr11:5789777-5789937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:559-762
               
               
               Cow position:chr11:35573369-35573568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 108

               
               
               Conread position:559-764
               
               
               Cow position:chr11:28644210-28644003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:559-769
               
               
               Cow position:chr11:39118874-39118666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:560-661
               
               
               Cow position:chr11:75246469-75246368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:560-668
               
               
               Cow position:chr11:34623292-34623183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:560-683
               
               
               Cow position:chr11:37982456-37982580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:560-693
               
               
               Cow position:chr11:70709909-70709771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:560-696
               
               
               Cow position:chr11:81605979-81605843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:560-723
               
               
               Cow position:chr11:83579055-83579220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 123

               
               
               Conread position:560-725
               
               
               Cow position:chr11:56290633-56290467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:560-759
               
               
               Cow position:chr11:27932402-27932188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:560-762
               
               
               Cow position:chr11:66518605-66518410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):156, 22

               
               
               Conread position:560-764
               
               
               Cow position:chr11:22747208-22747411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:560-764
               
               
               Cow position:chr11:33753790-33753984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:560-764
               
               
               Cow position:chr11:34032077-34032283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):52, 103

               
               
               Conread position:560-764
               
               
               Cow position:chr11:71168473-71168671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):164, 26

               
               
               Conread position:560-767
               
               
               Cow position:chr11:70826070-70825866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):52, 171

               
               
               Conread position:560-769
               
               
               Cow position:chr11:23137933-23138145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:560-769
               
               
               Cow position:chr11:30955122-30954913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 154

               
               
               Conread position:560-769
               
               
               Cow position:chr11:40478730-40478936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):11, 172

               
               
               Conread position:560-772
               
               
               Cow position:chr11:77128782-77128563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:561-712
               
               
               Cow position:chr11:62168211-62168362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 42

               
               
               Conread position:561-727
               
               
               Cow position:chr11:18587475-18587642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:562-728
               
               
               Cow position:chr11:56575641-56575812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:562-754
               
               
               Cow position:chr11:64351671-64351865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:563-670
               
               
               Cow position:chr11:78780740-78780848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:563-692
               
               
               Cow position:chr11:30320926-30320791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:563-695
               
               
               Cow position:chr11:47585944-47586073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):47, 92

               
               
               Conread position:563-710
               
               
               Cow position:chr11:17768601-17768457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:563-722
               
               
               Cow position:chr11:15373958-15373797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:563-728
               
               
               Cow position:chr11:64867901-64868069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:563-760
               
               
               Cow position:chr11:25387186-25386987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:563-764
               
               
               Cow position:chr11:61958624-61958826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):22, 193

               
               
               Conread position:563-769
               
               
               Cow position:chr11:1070974-1071179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:563-769
               
               
               Cow position:chr11:54334447-54334247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):48, 164

               
               
               Conread position:563-769
               
               
               Cow position:chr11:70609917-70609700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:563-770
               
               
               Cow position:chr11:34963188-34962977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 98

               
               
               Conread position:563-771
               
               
               Cow position:chr11:31885842-31885629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 171

               
               
               Conread position:564-679
               
               
               Cow position:chr11:46452253-46452137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:564-696
               
               
               Cow position:chr11:71767717-71767586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:564-697
               
               
               Cow position:chr11:70517477-70517610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):47, 98

               
               
               Conread position:564-701
               
               
               Cow position:chr11:60470081-60470212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:564-716
               
               
               Cow position:chr11:58938629-58938780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:564-764
               
               
               Cow position:chr11:83687316-83687515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):47, 169

               
               
               Conread position:564-769
               
               
               Cow position:chr11:33341026-33341233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):31, 152

               
               
               Conread position:564-769
               
               
               Cow position:chr11:49722015-49721815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 153

               
               
               Conread position:565-729
               
               
               Cow position:chr11:34692968-34692804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:565-764
               
               
               Cow position:chr11:23232405-23232597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:566-661
               
               
               Cow position:chr11:80596453-80596357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:566-687
               
               
               Cow position:chr11:59916263-59916140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 121

               
               
               Conread position:566-722
               
               
               Cow position:chr11:3234189-3234034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:566-722
               
               
               Cow position:chr11:36634926-36635082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:566-725
               
               
               Cow position:chr11:29983603-29983761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:566-757
               
               
               Cow position:chr11:79018943-79019135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:566-762
               
               
               Cow position:chr11:80530476-80530289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:566-764
               
               
               Cow position:chr11:14466372-14466570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:566-764
               
               
               Cow position:chr11:40573220-40573414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:566-769
               
               
               Cow position:chr11:377525-377730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:566-769
               
               
               Cow position:chr11:63482317-63482512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:566-773
               
               
               Cow position:chr11:62778557-62778356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 112

               
               
               Conread position:567-689
               
               
               Cow position:chr11:46333588-46333465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:567-695
               
               
               Cow position:chr11:62808392-62808520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:567-764
               
               
               Cow position:chr11:35803251-35803052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 101

               
               
               Conread position:568-682
               
               
               Cow position:chr11:56895862-56895976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:568-691
               
               
               Cow position:chr11:32615850-32615725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:568-711
               
               
               Cow position:chr11:2344368-2344220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:568-729
               
               
               Cow position:chr11:2933260-2933096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:568-764
               
               
               Cow position:chr11:69076024-69075827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 118

               
               
               Conread position:568-769
               
               
               Cow position:chr11:7590302-7590107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:569-679
               
               
               Cow position:chr11:61178470-61178359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:569-693
               
               
               Cow position:chr11:30805022-30805145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:569-697
               
               
               Cow position:chr11:81728540-81728665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:569-706
               
               
               Cow position:chr11:68173645-68173506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:569-761
               
               
               Cow position:chr11:65852589-65852397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 159

               
               
               Conread position:569-764
               
               
               Cow position:chr11:3393097-3393293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:569-764
               
               
               Cow position:chr11:69119407-69119210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:569-764
               
               
               Cow position:chr11:70086445-70086247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:569-764
               
               
               Cow position:chr11:83230288-83230478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):45, 116

               
               
               Conread position:569-769
               
               
               Cow position:chr11:30925267-30925058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:569-769
               
               
               Cow position:chr11:70278000-70278194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 134

               
               
               Conread position:570-679
               
               
               Cow position:chr11:35860692-35860584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 20

               
               
               Conread position:570-690
               
               
               Cow position:chr11:37923382-37923262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 32

               
               
               Conread position:570-697
               
               
               Cow position:chr11:18189625-18189752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:570-712
               
               
               Cow position:chr11:69415487-69415628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:570-727
               
               
               Cow position:chr11:34573320-34573478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:570-728
               
               
               Cow position:chr11:61137063-61137222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:570-763
               
               
               Cow position:chr11:47004457-47004264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:571-724
               
               
               Cow position:chr11:33697745-33697594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:571-728
               
               
               Cow position:chr11:21910516-21910674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):5, 20

               
               
               Conread position:571-769
               
               
               Cow position:chr11:31506959-31506758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:571-769
               
               
               Cow position:chr11:36658713-36658907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:571-769
               
               
               Cow position:chr11:71341356-71341552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:572-715
               
               
               Cow position:chr11:29946803-29946948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:572-763
               
               
               Cow position:chr11:4652863-4653058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:573-739
               
               
               Cow position:chr11:32690862-32691029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:573-762
               
               
               Cow position:chr11:71807458-71807650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 122

               
               
               Conread position:573-769
               
               
               Cow position:chr11:45897940-45898139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 160

               
               
               Conread position:574-725
               
               
               Cow position:chr11:48063695-48063845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:574-725
               
               
               Cow position:chr11:84498847-84498994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:574-758
               
               
               Cow position:chr11:20602334-20602147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:574-764
               
               
               Cow position:chr11:71501026-71501213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:574-769
               
               
               Cow position:chr11:18588478-18588672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 148

               
               
               Conread position:574-769
               
               
               Cow position:chr11:33311085-33310886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 133

               
               
               Conread position:575-728
               
               
               Cow position:chr11:62609711-62609559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):37, 137

               
               
               Conread position:575-763
               
               
               Cow position:chr11:56654662-56654469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:575-769
               
               
               Cow position:chr11:62155745-62155540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:576-722
               
               
               Cow position:chr11:7307738-7307590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:576-764
               
               
               Cow position:chr11:53147426-53147620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:576-767
               
               
               Cow position:chr11:33345551-33345359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:577-722
               
               
               Cow position:chr11:81931012-81931153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:577-763
               
               
               Cow position:chr11:36799203-36799382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:580-725
               
               
               Cow position:chr11:77556198-77556052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:582-695
               
               
               Cow position:chr11:63517208-63517097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:582-697
               
               
               Cow position:chr11:3769209-3769325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:582-709
               
               
               Cow position:chr11:62376374-62376501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:582-764
               
               
               Cow position:chr11:1362368-1362557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:582-764
               
               
               Cow position:chr11:42359219-42359031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:583-693
               
               
               Cow position:chr11:41048453-41048343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:583-701
               
               
               Cow position:chr11:15682881-15683000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:583-764
               
               
               Cow position:chr11:8147800-8147980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 129

               
               
               Conread position:583-769
               
               
               Cow position:chr11:22499269-22499450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:583-769
               
               
               Cow position:chr11:58588443-58588260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:583-769
               
               
               Cow position:chr11:80761279-80761465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:583-776
               
               
               Cow position:chr11:46953046-46952861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 145

               
               
               Conread position:584-711
               
               
               Cow position:chr11:16719343-16719215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:584-712
               
               
               Cow position:chr11:42056204-42056077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:584-764
               
               
               Cow position:chr11:18572898-18572720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 99

               
               
               Conread position:584-764
               
               
               Cow position:chr11:26483803-26483633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:584-769
               
               
               Cow position:chr11:23128442-23128629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:586-760
               
               
               Cow position:chr11:86720322-86720490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:586-769
               
               
               Cow position:chr11:12111363-12111540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:586-775
               
               
               Cow position:chr11:56734724-56734535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:592-716
               
               
               Cow position:chr11:61130577-61130700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 117

               
               
               Conread position:592-728
               
               
               Cow position:chr11:16320373-16320239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 50

               
               
               Conread position:592-763
               
               
               Cow position:chr11:42043907-42044074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:592-764
               
               
               Cow position:chr11:16540952-16540780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:592-764
               
               
               Cow position:chr11:30787313-30787131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:592-769
               
               
               Cow position:chr11:67246875-67246706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:593-757
               
               
               Cow position:chr11:36987038-36986881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:593-763
               
               
               Cow position:chr11:1157732-1157566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 74

               
               
               Conread position:593-765
               
               
               Cow position:chr11:33527141-33526970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):19, 139

               
               
               Conread position:593-769
               
               
               Cow position:chr11:64638437-64638615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:594-728
               
               
               Cow position:chr11:41809405-41809540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:594-762
               
               
               Cow position:chr11:21438296-21438136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):18, 131

               
               
               Conread position:594-764
               
               
               Cow position:chr11:249394-249566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:594-767
               
               
               Cow position:chr11:28168335-28168509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 120

               
               
               Conread position:595-728
               
               
               Cow position:chr11:53553302-53553169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):121, 38

               
               
               Conread position:595-730
               
               
               Cow position:chr11:31352465-31352600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:595-761
               
               
               Cow position:chr11:64406315-64406147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:596-728
               
               
               Cow position:chr11:34106584-34106720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:596-757
               
               
               Cow position:chr11:7299220-7299058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:597-779
               
               
               Cow position:chr11:55203377-55203556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:598-769
               
               
               Cow position:chr11:38874320-38874489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):6, 18

               
               
               Conread position:598-769
               
               
               Cow position:chr11:60143219-60143391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 53

               
               
               Conread position:599-764
               
               
               Cow position:chr11:7395212-7395058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:600-764
               
               
               Cow position:chr11:52983757-52983595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 128

               
               
               Conread position:601-769
               
               
               Cow position:chr11:75965573-75965736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:605-764
               
               
               Cow position:chr11:41175873-41176031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:606-749
               
               
               Cow position:chr11:71482455-71482312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):6, 116

               
               
               Conread position:612-767
               
               
               Cow position:chr11:70273375-70273221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):112, 120

               
               
               Conread position:613-764
               
               
               Cow position:chr11:49231941-49231792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:616-771
               
               
               Cow position:chr11:80787842-80787997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:625-764
               
               
               Cow position:chr11:61858847-61858984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:625-769
               
               
               Cow position:chr11:18340985-18341127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:629-760
               
               
               Cow position:chr11:17515492-17515358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:630-764
               
               
               Cow position:chr11:21399013-21398878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:632-769
               
               
               Cow position:chr11:30597042-30596901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:639-772
               
               
               Cow position:chr11:2811688-2811820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:641-772
               
               
               Cow position:chr11:22931931-22932068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:642-763
               
               
               Cow position:chr11:48041994-48042116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:648-769
               
               
               Cow position:chr11:8339373-8339494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:648-769
               
               
               Cow position:chr11:27386306-27386428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:649-764
               
               
               Cow position:chr11:21427961-21428074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):81, 0
Show alignments to all cow chromosomes.