Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8041I01.3
        

               Conread position:
               399-728
               

               Cow position:
               chr28:4810075-4809754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               85, 10
               

               Conread position:
               403-754
               

               Cow position:
               chr28:5685000-5684657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               91, 19
               

               Conread position:
               415-744
               

               Cow position:
               chr28:17948836-17949154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               199, 47
               

               Conread position:
               427-698
               

               Cow position:
               chr28:4022947-4022678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 96
               

               Conread position:
               440-712
               

               Cow position:
               chr28:18797567-18797311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               9, 66
               

               Conread position:
               446-734
               

               Cow position:
               chr28:22332785-22332495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               41, 68
               

               Conread position:
               448-725
               

               Cow position:
               chr28:8304497-8304225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               9, 131
               

               Conread position:
               450-730
               

               Cow position:
               chr28:11307268-11307547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 18
               

               Conread position:
               452-692
               

               Cow position:
               chr28:13448364-13448134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               184
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               18, 43
               

               Conread position:
               452-764
               

               Cow position:
               chr28:11884280-11884578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               20, 7
               

               Conread position:
               454-692
               

               Cow position:
               chr28:5402796-5403031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               36, 7
               

               Conread position:
               457-722
               

               Cow position:
               chr28:11398552-11398816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 27
               

               Conread position:
               461-722
               

               Cow position:
               chr28:2820014-2819756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               30, 77
               

               Conread position:
               462-764
               

               Cow position:
               chr28:21502617-21502335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               464-658
               

               Cow position:
               chr28:21118917-21118722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               156
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               24, 6
               

               Conread position:
               464-661
               

               Cow position:
               chr28:29500648-29500442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               464-766
               

               Cow position:
               chr28:11866430-11866727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 100
               

               Conread position:
               465-579
               

               Cow position:
               chr28:14660199-14660085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               89
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               466-667
               

               Cow position:
               chr28:25805912-25806115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               466-679
               

               Cow position:
               chr28:7964446-7964654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               466-725
               

               Cow position:
               chr28:10298076-10297834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               22, 61
               

               Conread position:
               466-728
               

               Cow position:
               chr28:17740056-17739798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 27
               

               Conread position:
               466-768
               

               Cow position:
               chr28:19055252-19054950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               145, 173
               

               Conread position:
               467-661
               

               Cow position:
               chr28:17737916-17738111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               152
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               467-710
               

               Cow position:
               chr28:27313489-27313739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               467-729
               

               Cow position:
               chr28:7350882-7350628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               147, 34
               

               Conread position:
               467-761
               

               Cow position:
               chr28:5204417-5204137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               145, 35
               

               Conread position:
               467-764
               

               Cow position:
               chr28:7145040-7144731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               212
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               17, 37
               

               Conread position:
               468-587
               

               Cow position:
               chr28:29972144-29972263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               93
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               468-644
               

               Cow position:
               chr28:23676551-23676372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               468-677
               

               Cow position:
               chr28:11305406-11305606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               144, 16
               

               Conread position:
               468-695
               

               Cow position:
               chr28:7644972-7644748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 16
               

               Conread position:
               468-696
               

               Cow position:
               chr28:29217837-29217609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               150, 126
               

               Conread position:
               468-711
               

               Cow position:
               chr28:8827396-8827157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               144, 16
               

               Conread position:
               468-763
               

               Cow position:
               chr28:2279375-2279648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               144, 27
               

               Conread position:
               469-680
               

               Cow position:
               chr28:24887826-24887615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               139, 15
               

               Conread position:
               469-706
               

               Cow position:
               chr28:5674104-5673872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 102
               

               Conread position:
               469-711
               

               Cow position:
               chr28:1532238-1531999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               26, 7
               

               Conread position:
               469-722
               

               Cow position:
               chr28:1383039-1383304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               41, 33
               

               Conread position:
               469-728
               

               Cow position:
               chr28:21008441-21008695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               143, 7
               

               Conread position:
               469-728
               

               Cow position:
               chr28:33561599-33561338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               21, 119
               

               Conread position:
               469-737
               

               Cow position:
               chr28:11743596-11743853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               141, 70
               

               Conread position:
               469-757
               

               Cow position:
               chr28:11059722-11059451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               214
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               469-772
               

               Cow position:
               chr28:27161084-27161394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 179
               

               Conread position:
               470-633
               

               Cow position:
               chr28:10140355-10140513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               470-644
               

               Cow position:
               chr28:7750789-7750957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               32, 107
               

               Conread position:
               470-645
               

               Cow position:
               chr28:3257224-3257046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               12, 116
               

               Conread position:
               470-653
               

               Cow position:
               chr28:32372468-32372295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               21, 99
               

               Conread position:
               470-668
               

               Cow position:
               chr28:26867923-26868116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               15, 33
               

               Conread position:
               470-703
               

               Cow position:
               chr28:5552475-5552714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               37, 226
               

               Conread position:
               470-708
               

               Cow position:
               chr28:1654862-1655105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               118, 19
               

               Conread position:
               470-711
               

               Cow position:
               chr28:9705889-9705645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               15, 35
               

               Conread position:
               470-718
               

               Cow position:
               chr28:15362808-15362564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 25
               

               Conread position:
               470-720
               

               Cow position:
               chr28:10615719-10615963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 58
               

               Conread position:
               470-728
               

               Cow position:
               chr28:31223324-31223582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               26, 126
               

               Conread position:
               470-743
               

               Cow position:
               chr28:2077734-2077445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 106
               

               Conread position:
               470-764
               

               Cow position:
               chr28:18847788-18847491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               128, 12
               

               Conread position:
               470-769
               

               Cow position:
               chr28:26982506-26982800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 25
               

               Conread position:
               471-653
               

               Cow position:
               chr28:24238256-24238427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               143, 30
               

               Conread position:
               471-741
               

               Cow position:
               chr28:28561129-28560858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               19, 58
               

               Conread position:
               471-749
               

               Cow position:
               chr28:20125009-20124740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               189, 30
               

               Conread position:
               472-615
               

               Cow position:
               chr28:22339602-22339459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               140, 118
               

               Conread position:
               472-672
               

               Cow position:
               chr28:2151210-2151409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               17, 57
               

               Conread position:
               472-683
               

               Cow position:
               chr28:34464148-34463934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               472-689
               

               Cow position:
               chr28:34081642-34081849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               472-696
               

               Cow position:
               chr28:10203337-10203126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               472-722
               

               Cow position:
               chr28:5818067-5817821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               142, 89
               

               Conread position:
               472-769
               

               Cow position:
               chr28:1632418-1632718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               224
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               27, 11
               

               Conread position:
               472-769
               

               Cow position:
               chr28:10681591-10681886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               53, 11
               

               Conread position:
               473-651
               

               Cow position:
               chr28:30921827-30922008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               473-679
               

               Cow position:
               chr28:11239085-11239296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               7, 22
               

               Conread position:
               473-722
               

               Cow position:
               chr28:10845331-10845087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               12, 72
               

               Conread position:
               473-722
               

               Cow position:
               chr28:24707127-24706878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               37, 14
               

               Conread position:
               473-725
               

               Cow position:
               chr28:13133863-13133610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               474-651
               

               Cow position:
               chr28:16159642-16159819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               13, 113
               

               Conread position:
               474-659
               

               Cow position:
               chr28:9639877-9639695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               137, 26
               

               Conread position:
               474-661
               

               Cow position:
               chr28:34830382-34830196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               21, 56
               

               Conread position:
               474-673
               

               Cow position:
               chr28:4866351-4866544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               138, 91
               

               Conread position:
               474-673
               

               Cow position:
               chr28:21744941-21744745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               10, 94
               

               Conread position:
               474-680
               

               Cow position:
               chr28:17620130-17620337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               168
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 170
               

               Conread position:
               474-685
               

               Cow position:
               chr28:11798549-11798761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               474-689
               

               Cow position:
               chr28:20281975-20281772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               7, 29
               

               Conread position:
               474-693
               

               Cow position:
               chr28:26820048-26820266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               15, 123
               

               Conread position:
               474-714
               

               Cow position:
               chr28:24367715-24367953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               474-722
               

               Cow position:
               chr28:4937015-4937265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 9
               

               Conread position:
               474-722
               

               Cow position:
               chr28:19015928-19015697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               191
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               474-728
               

               Cow position:
               chr28:16918946-16919194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               19, 10
               

               Conread position:
               474-729
               

               Cow position:
               chr28:11348654-11348398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               24, 61
               

               Conread position:
               474-764
               

               Cow position:
               chr28:1538396-1538111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               61, 152
               

               Conread position:
               474-769
               

               Cow position:
               chr28:6358183-6358475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 244
               

               Conread position:
               474-769
               

               Cow position:
               chr28:10053105-10053396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 29
               

               Conread position:
               474-769
               

               Cow position:
               chr28:13245792-13245496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 255
               

               Conread position:
               474-769
               

               Cow position:
               chr28:15263488-15263780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               14, 123
               

               Conread position:
               474-769
               

               Cow position:
               chr28:21207153-21207456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               116, 15
               

               Conread position:
               474-776
               

               Cow position:
               chr28:24693504-24693206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               137, 10
               

               Conread position:
               475-595
               

               Cow position:
               chr28:19036848-19036726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               475-610
               

               Cow position:
               chr28:27941556-27941689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               475-672
               

               Cow position:
               chr28:11562017-11562215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               157
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               475-674
               

               Cow position:
               chr28:9696059-9695860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               21, 122
               

               Conread position:
               475-678
               

               Cow position:
               chr28:8681209-8681405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               12, 94
               

               Conread position:
               475-684
               

               Cow position:
               chr28:7885258-7885048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               60, 26
               

               Conread position:
               475-690
               

               Cow position:
               chr28:22307226-22307022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               475-697
               

               Cow position:
               chr28:23649999-23650226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               475-698
               

               Cow position:
               chr28:3137777-3137548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               110, 9
               

               Conread position:
               475-699
               

               Cow position:
               chr28:28602978-28602757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               138, 12
               

               Conread position:
               475-701
               

               Cow position:
               chr28:30505798-30505572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               15, 95
               

               Conread position:
               475-710
               

               Cow position:
               chr28:26810908-26810672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               18, 91
               

               Conread position:
               475-711
               

               Cow position:
               chr28:4440525-4440288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               475-720
               

               Cow position:
               chr28:6563668-6563915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               475-763
               

               Cow position:
               chr28:10606413-10606685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 29
               

               Conread position:
               475-764
               

               Cow position:
               chr28:11422593-11422874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               137, 54
               

               Conread position:
               475-764
               

               Cow position:
               chr28:13527424-13527138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 53
               

               Conread position:
               475-764
               

               Cow position:
               chr28:28631968-28631672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               53, 27
               

               Conread position:
               476-571
               

               Cow position:
               chr28:2743341-2743245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               97
               

               Alignm identity:
               82
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               476-585
               

               Cow position:
               chr28:15714092-15713982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               88
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               476-590
               

               Cow position:
               chr28:20614326-20614440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               476-636
               

               Cow position:
               chr28:15411905-15411747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               134, 26
               

               Conread position:
               476-661
               

               Cow position:
               chr28:6301309-6301123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               159
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               476-680
               

               Cow position:
               chr28:2892481-2892275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               476-687
               

               Cow position:
               chr28:2825645-2825435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               136, 26
               

               Conread position:
               476-688
               

               Cow position:
               chr28:34655234-34655020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               476-694
               

               Cow position:
               chr28:32015011-32014793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 100
               

               Conread position:
               476-695
               

               Cow position:
               chr28:22630235-22630020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               38, 28
               

               Conread position:
               476-709
               

               Cow position:
               chr28:26826444-26826217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 25
               

               Conread position:
               476-711
               

               Cow position:
               chr28:1315321-1315559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               14, 115
               

               Conread position:
               476-711
               

               Cow position:
               chr28:7014679-7014445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               135, 103
               

               Conread position:
               476-711
               

               Cow position:
               chr28:13048060-13048291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 40
               

               Conread position:
               476-714
               

               Cow position:
               chr28:26265055-26264816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               476-716
               

               Cow position:
               chr28:4163355-4163592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 196
               

               Conread position:
               476-722
               

               Cow position:
               chr28:5255094-5254855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               134, 25
               

               Conread position:
               476-723
               

               Cow position:
               chr28:23262224-23262472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               182
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               11, 177
               

               Conread position:
               476-728
               

               Cow position:
               chr28:11759334-11759584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               14, 113
               

               Conread position:
               476-729
               

               Cow position:
               chr28:4834618-4834870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               136, 68
               

               Conread position:
               476-760
               

               Cow position:
               chr28:4823825-4823552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               16, 26
               

               Conread position:
               476-764
               

               Cow position:
               chr28:751456-751172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 159
               

               Conread position:
               476-764
               

               Cow position:
               chr28:2524168-2523882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 53
               

               Conread position:
               476-764
               

               Cow position:
               chr28:4873099-4873407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               476-764
               

               Cow position:
               chr28:8347960-8347673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 256
               

               Conread position:
               476-766
               

               Cow position:
               chr28:34877749-34878030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               84, 25
               

               Conread position:
               476-767
               

               Cow position:
               chr28:7697754-7698041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 188
               

               Conread position:
               476-768
               

               Cow position:
               chr28:5630324-5630023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 153
               

               Conread position:
               476-768
               

               Cow position:
               chr28:12662165-12662463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               136, 263
               

               Conread position:
               476-769
               

               Cow position:
               chr28:3449534-3449238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 91
               

               Conread position:
               476-772
               

               Cow position:
               chr28:9426126-9426418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 93
               

               Conread position:
               476-776
               

               Cow position:
               chr28:16419400-16419105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               138, 74
               

               Conread position:
               477-586
               

               Cow position:
               chr28:22278805-22278915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               88
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               477-637
               

               Cow position:
               chr28:22170057-22170214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               16, 93
               

               Conread position:
               477-645
               

               Cow position:
               chr28:14947941-14947773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               16, 48
               

               Conread position:
               477-680
               

               Cow position:
               chr28:3678585-3678385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               27, 92
               

               Conread position:
               477-680
               

               Cow position:
               chr28:18761785-18761980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               477-684
               

               Cow position:
               chr28:22085323-22085523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               137, 17
               

               Conread position:
               477-685
               

               Cow position:
               chr28:12628961-12628754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               134, 25
               

               Conread position:
               477-696
               

               Cow position:
               chr28:20046766-20046560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               172
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               134, 91
               

               Conread position:
               477-712
               

               Cow position:
               chr28:19038793-19039028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 105
               

               Conread position:
               477-724
               

               Cow position:
               chr28:4159186-4158935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               192
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               99, 24
               

               Conread position:
               477-727
               

               Cow position:
               chr28:13356142-13356395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 238
               

               Conread position:
               477-763
               

               Cow position:
               chr28:30293361-30293643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               16, 48
               

               Conread position:
               477-764
               

               Cow position:
               chr28:16204107-16204387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               100, 12
               

               Conread position:
               477-767
               

               Cow position:
               chr28:4307669-4307965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               477-769
               

               Cow position:
               chr28:9812508-9812212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               20, 102
               

               Conread position:
               477-769
               

               Cow position:
               chr28:10057363-10057652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               82, 54
               

               Conread position:
               478-580
               

               Cow position:
               chr28:10528735-10528837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               103
               

               Alignm identity:
               89
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               478-607
               

               Cow position:
               chr28:19345702-19345574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               105
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               478-627
               

               Cow position:
               chr28:6124037-6124185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               478-659
               

               Cow position:
               chr28:16252184-16252361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               24, 87
               

               Conread position:
               478-690
               

               Cow position:
               chr28:659063-659282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               170
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               478-714
               

               Cow position:
               chr28:14151448-14151211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               113, 6
               

               Conread position:
               478-714
               

               Cow position:
               chr28:16416869-16416631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               10, 129
               

               Conread position:
               478-714
               

               Cow position:
               chr28:19127948-19128180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 157
               

               Conread position:
               478-722
               

               Cow position:
               chr28:3406188-3406429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               27, 6
               

               Conread position:
               478-723
               

               Cow position:
               chr28:4101735-4101500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               132, 72
               

               Conread position:
               478-729
               

               Cow position:
               chr28:29988887-29989144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               38, 23
               

               Conread position:
               478-741
               

               Cow position:
               chr28:26517367-26517097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               478-764
               

               Cow position:
               chr28:3484807-3484519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 23
               

               Conread position:
               478-764
               

               Cow position:
               chr28:5200050-5199764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 257
               

               Conread position:
               478-769
               

               Cow position:
               chr28:9100151-9099871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               479-671
               

               Cow position:
               chr28:24698913-24698722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               132, 15
               

               Conread position:
               479-680
               

               Cow position:
               chr28:1178097-1178301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               479-688
               

               Cow position:
               chr28:3424001-3423792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 114
               

               Conread position:
               479-703
               

               Cow position:
               chr28:14242919-14242693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 86
               

               Conread position:
               479-716
               

               Cow position:
               chr28:29661976-29661734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               140, 25
               

               Conread position:
               479-725
               

               Cow position:
               chr28:5224924-5224685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               64, 23
               

               Conread position:
               479-727
               

               Cow position:
               chr28:4071179-4070944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               133, 23
               

               Conread position:
               479-741
               

               Cow position:
               chr28:21103598-21103864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               204
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               84, 126
               

               Conread position:
               479-754
               

               Cow position:
               chr28:23638892-23638624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               224, 22
               

               Conread position:
               479-764
               

               Cow position:
               chr28:4884032-4884322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               116, 23
               

               Conread position:
               479-764
               

               Cow position:
               chr28:23296539-23296266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               135, 22
               

               Conread position:
               479-764
               

               Cow position:
               chr28:34786785-34786505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               132, 220
               

               Conread position:
               479-767
               

               Cow position:
               chr28:19221915-19222212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               43, 231
               

               Conread position:
               480-588
               

               Cow position:
               chr28:508191-508081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               481-763
               

               Cow position:
               chr28:5931564-5931296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               207
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               481-772
               

               Cow position:
               chr28:13370920-13371208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               131, 21
               

               Conread position:
               482-645
               

               Cow position:
               chr28:32203343-32203175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               103, 44
               

               Conread position:
               482-659
               

               Cow position:
               chr28:11309875-11310056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               95, 34
               

               Conread position:
               482-676
               

               Cow position:
               chr28:30385374-30385180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               130, 187
               

               Conread position:
               482-728
               

               Cow position:
               chr28:4006997-4006761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               483-744
               

               Cow position:
               chr28:21046371-21046616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               102, 122
               

               Conread position:
               483-764
               

               Cow position:
               chr28:20409609-20409332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               82, 117
               

               Conread position:
               484-610
               

               Cow position:
               chr28:13194473-13194599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               95
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               484-653
               

               Cow position:
               chr28:26304283-26304113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               105, 47
               

               Conread position:
               484-660
               

               Cow position:
               chr28:4077120-4077303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               484-664
               

               Cow position:
               chr28:13195534-13195712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               130, 18
               

               Conread position:
               484-664
               

               Cow position:
               chr28:16200523-16200704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               154
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               484-673
               

               Cow position:
               chr28:9677879-9677699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               128, 18
               

               Conread position:
               484-676
               

               Cow position:
               chr28:8936364-8936177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               484-685
               

               Cow position:
               chr28:10196654-10196847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               127, 18
               

               Conread position:
               484-685
               

               Cow position:
               chr28:23728094-23728281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               128, 17
               

               Conread position:
               484-688
               

               Cow position:
               chr28:11827905-11827703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               168
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 180
               

               Conread position:
               484-689
               

               Cow position:
               chr28:8359117-8358913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               127, 184
               

               Conread position:
               484-689
               

               Cow position:
               chr28:32593419-32593623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               120, 17
               

               Conread position:
               484-705
               

               Cow position:
               chr28:11411323-11411538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               176
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               126, 25
               

               Conread position:
               484-711
               

               Cow position:
               chr28:777893-777667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               130, 108
               

               Conread position:
               484-711
               

               Cow position:
               chr28:7131877-7132095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               128, 10
               

               Conread position:
               484-711
               

               Cow position:
               chr28:8396543-8396327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               14, 34
               

               Conread position:
               484-716
               

               Cow position:
               chr28:10480591-10480820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               186
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               81, 17
               

               Conread position:
               484-719
               

               Cow position:
               chr28:18474867-18474625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               78, 18
               

               Conread position:
               484-721
               

               Cow position:
               chr28:6283273-6283506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 55
               

               Conread position:
               484-724
               

               Cow position:
               chr28:2933210-2933449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               167
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               129, 110
               

               Conread position:
               484-724
               

               Cow position:
               chr28:11828743-11828977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               128, 18
               

               Conread position:
               484-748
               

               Cow position:
               chr28:3445263-3445525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               123, 89
               

               Conread position:
               484-764
               

               Cow position:
               chr28:5144297-5144578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 251
               

               Conread position:
               484-764
               

               Cow position:
               chr28:23447617-23447882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               484-764
               

               Cow position:
               chr28:24966601-24966326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               130, 18
               

               Conread position:
               484-767
               

               Cow position:
               chr28:22571467-22571728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               128, 40
               

               Conread position:
               484-769
               

               Cow position:
               chr28:1838212-1837931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               96, 18
               

               Conread position:
               484-769
               

               Cow position:
               chr28:11426333-11426605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               195
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               130, 17
               

               Conread position:
               484-769
               

               Cow position:
               chr28:25700653-25700936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               128, 45
               

               Conread position:
               484-772
               

               Cow position:
               chr28:11584993-11585271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               130, 18
               

               Conread position:
               484-775
               

               Cow position:
               chr28:23531079-23530798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               130, 18
               

               Conread position:
               484-785
               

               Cow position:
               chr28:17748184-17748481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               127, 32
               

               Conread position:
               485-700
               

               Cow position:
               chr28:9418732-9418963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               7, 18
               

               Conread position:
               485-755
               

               Cow position:
               chr28:34843360-34843624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 16
               

               Conread position:
               485-756
               

               Cow position:
               chr28:3725992-3726264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 98
               

               Conread position:
               485-769
               

               Cow position:
               chr28:19564019-19564295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 92
               

               Conread position:
               486-764
               

               Cow position:
               chr28:7008766-7009035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 82
               

               Conread position:
               486-764
               

               Cow position:
               chr28:7618947-7619211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               128, 15
               

               Conread position:
               486-764
               

               Cow position:
               chr28:23007527-23007792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               126, 79
               

               Conread position:
               487-651
               

               Cow position:
               chr28:4588528-4588370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               125, 29
               

               Conread position:
               487-678
               

               Cow position:
               chr28:4379488-4379667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               125, 14
               

               Conread position:
               487-680
               

               Cow position:
               chr28:5609704-5609894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               124, 88
               

               Conread position:
               487-696
               

               Cow position:
               chr28:9109427-9109223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               5, 96
               

               Conread position:
               487-709
               

               Cow position:
               chr28:14720569-14720790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               5, 98
               

               Conread position:
               487-714
               

               Cow position:
               chr28:26943938-26944169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               175
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               124, 112
               

               Conread position:
               487-754
               

               Cow position:
               chr28:10978053-10977794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               15, 53
               

               Conread position:
               487-757
               

               Cow position:
               chr28:18625450-18625180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               104, 22
               

               Conread position:
               487-771
               

               Cow position:
               chr28:10495086-10495354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 33
               

               Conread position:
               487-772
               

               Cow position:
               chr28:3143670-3143952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 81
               

               Conread position:
               488-679
               

               Cow position:
               chr28:4870583-4870781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               488-691
               

               Cow position:
               chr28:22847375-22847578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               56, 23
               

               Conread position:
               488-707
               

               Cow position:
               chr28:5441685-5441901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               82, 14
               

               Conread position:
               488-729
               

               Cow position:
               chr28:12991348-12991110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               124, 85
               

               Conread position:
               488-763
               

               Cow position:
               chr28:16085532-16085266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               29, 61
               

               Conread position:
               488-766
               

               Cow position:
               chr28:28765692-28765965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 13
               

               Conread position:
               489-637
               

               Cow position:
               chr28:5294790-5294936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               118
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               123, 40
               

               Conread position:
               489-637
               

               Cow position:
               chr28:18740284-18740426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               121, 75
               

               Conread position:
               489-645
               

               Cow position:
               chr28:3311009-3311166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               136
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               489-645
               

               Cow position:
               chr28:22278412-22278574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               489-646
               

               Cow position:
               chr28:5428542-5428697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               14, 41
               

               Conread position:
               489-661
               

               Cow position:
               chr28:26574611-26574452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               123, 15
               

               Conread position:
               489-676
               

               Cow position:
               chr28:5770071-5769892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               121, 78
               

               Conread position:
               489-678
               

               Cow position:
               chr28:28903347-28903534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               122, 98
               

               Conread position:
               489-680
               

               Cow position:
               chr28:19395075-19394898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               122, 44
               

               Conread position:
               489-683
               

               Cow position:
               chr28:8898267-8898064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               10, 125
               

               Conread position:
               489-683
               

               Cow position:
               chr28:18791246-18791062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               122, 90
               

               Conread position:
               489-685
               

               Cow position:
               chr28:10767595-10767395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               489-686
               

               Cow position:
               chr28:27445363-27445556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               114, 86
               

               Conread position:
               489-687
               

               Cow position:
               chr28:6053496-6053287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               489-690
               

               Cow position:
               chr28:18176036-18176234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               124, 20
               

               Conread position:
               489-692
               

               Cow position:
               chr28:13269930-13269742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               123, 86
               

               Conread position:
               489-695
               

               Cow position:
               chr28:7132167-7132374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               489-697
               

               Cow position:
               chr28:117546-117757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               489-697
               

               Cow position:
               chr28:16544206-16544002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               87, 130
               

               Conread position:
               489-697
               

               Cow position:
               chr28:25827516-25827725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               489-699
               

               Cow position:
               chr28:5152827-5152605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               88, 45
               

               Conread position:
               489-709
               

               Cow position:
               chr28:5805874-5805665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               123, 36
               

               Conread position:
               489-714
               

               Cow position:
               chr28:2801439-2801215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               122, 105
               

               Conread position:
               489-716
               

               Cow position:
               chr28:10959011-10958779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               123, 83
               

               Conread position:
               489-723
               

               Cow position:
               chr28:11527047-11527277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               123, 73
               

               Conread position:
               489-723
               

               Cow position:
               chr28:12598548-12598320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               122, 68
               

               Conread position:
               489-724
               

               Cow position:
               chr28:4876650-4876424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               123, 80
               

               Conread position:
               489-724
               

               Cow position:
               chr28:15272058-15272298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               489-727
               

               Cow position:
               chr28:20174049-20173810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               184
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               107, 13
               

               Conread position:
               489-728
               

               Cow position:
               chr28:4089848-4090078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               121, 20
               

               Conread position:
               489-729
               

               Cow position:
               chr28:23724257-23724488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               140, 85
               

               Conread position:
               489-731
               

               Cow position:
               chr28:2775260-2775019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               124, 13
               

               Conread position:
               489-734
               

               Cow position:
               chr28:118826-118578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               165
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               489-736
               

               Cow position:
               chr28:22133120-22132874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               122, 76
               

               Conread position:
               489-754
               

               Cow position:
               chr28:6059249-6059519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               489-759
               

               Cow position:
               chr28:32179911-32179630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               42, 185
               

               Conread position:
               489-763
               

               Cow position:
               chr28:27218537-27218267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 156
               

               Conread position:
               489-764
               

               Cow position:
               chr28:8787751-8787481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               199
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               103, 80
               

               Conread position:
               489-764
               

               Cow position:
               chr28:10588821-10589082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               231, 79
               

               Conread position:
               489-764
               

               Cow position:
               chr28:20759481-20759760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 152
               

               Conread position:
               489-769
               

               Cow position:
               chr28:4643558-4643831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 69
               

               Conread position:
               489-769
               

               Cow position:
               chr28:21845163-21844892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               123, 39
               

               Conread position:
               489-769
               

               Cow position:
               chr28:33322664-33322390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 35
               

               Conread position:
               490-661
               

               Cow position:
               chr28:3759208-3759032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               490-671
               

               Cow position:
               chr28:26960702-26960877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               122, 83
               

               Conread position:
               490-698
               

               Cow position:
               chr28:2777741-2777535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               124, 90
               

               Conread position:
               490-704
               

               Cow position:
               chr28:12974095-12973880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               165
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               490-751
               

               Cow position:
               chr28:12088435-12088695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               129, 99
               

               Conread position:
               490-769
               

               Cow position:
               chr28:4881038-4881300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 30
               

               Conread position:
               490-769
               

               Cow position:
               chr28:5436875-5437151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               202
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               121, 138
               

               Conread position:
               490-772
               

               Cow position:
               chr28:25727581-25727304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               8, 36
               

               Conread position:
               491-644
               

               Cow position:
               chr28:5724930-5725089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               75, 50
               

               Conread position:
               491-654
               

               Cow position:
               chr28:3494571-3494404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               491-695
               

               Cow position:
               chr28:21779389-21779187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               120, 41
               

               Conread position:
               491-715
               

               Cow position:
               chr28:662308-662094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               123, 10
               

               Conread position:
               491-720
               

               Cow position:
               chr28:4013293-4013067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 80
               

               Conread position:
               491-722
               

               Cow position:
               chr28:11987371-11987155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               122, 10
               

               Conread position:
               491-722
               

               Cow position:
               chr28:12055609-12055393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               122, 10
               

               Conread position:
               491-729
               

               Cow position:
               chr28:22182922-22183173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               491-763
               

               Cow position:
               chr28:8408968-8408676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               71, 257
               

               Conread position:
               491-769
               

               Cow position:
               chr28:3492579-3492848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               119, 10
               

               Conread position:
               491-769
               

               Cow position:
               chr28:4016731-4016469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               123, 10
               

               Conread position:
               491-769
               

               Cow position:
               chr28:5827142-5826888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               10, 78
               

               Conread position:
               491-769
               

               Cow position:
               chr28:8291622-8291361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               225, 11
               

               Conread position:
               491-769
               

               Cow position:
               chr28:22323469-22323205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               120, 91
               

               Conread position:
               491-772
               

               Cow position:
               chr28:3078483-3078749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               11, 58
               

               Conread position:
               492-645
               

               Cow position:
               chr28:10896450-10896299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               83, 136
               

               Conread position:
               492-649
               

               Cow position:
               chr28:12448427-12448283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               492-659
               

               Cow position:
               chr28:1490181-1490349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               492-661
               

               Cow position:
               chr28:22500297-22500456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               34, 60
               

               Conread position:
               492-680
               

               Cow position:
               chr28:5245566-5245379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               84, 19
               

               Conread position:
               492-687
               

               Cow position:
               chr28:18928755-18928951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               492-697
               

               Cow position:
               chr28:8112051-8112268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               492-701
               

               Cow position:
               chr28:26784049-26784239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               492-717
               

               Cow position:
               chr28:28501450-28501219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               95, 179
               

               Conread position:
               492-722
               

               Cow position:
               chr28:25057165-25056947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               492-725
               

               Cow position:
               chr28:17357815-17358056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               85, 144
               

               Conread position:
               492-734
               

               Cow position:
               chr28:13504797-13505041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               65, 37
               

               Conread position:
               492-739
               

               Cow position:
               chr28:14657925-14657662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               119, 252
               

               Conread position:
               492-764
               

               Cow position:
               chr28:23410125-23410383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               203
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               120, 65
               

               Conread position:
               492-764
               

               Cow position:
               chr28:23616614-23616350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               95, 108
               

               Conread position:
               492-766
               

               Cow position:
               chr28:16405957-16405685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               120, 33
               

               Conread position:
               492-769
               

               Cow position:
               chr28:3011058-3011336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 164
               

               Conread position:
               492-769
               

               Cow position:
               chr28:5193532-5193257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               120, 42
               

               Conread position:
               492-769
               

               Cow position:
               chr28:5273218-5273502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               203
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               493-668
               

               Cow position:
               chr28:25518548-25518729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               55, 31
               

               Conread position:
               493-726
               

               Cow position:
               chr28:19361947-19361712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               493-755
               

               Cow position:
               chr28:11814871-11815128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               198
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               118, 78
               

               Conread position:
               493-769
               

               Cow position:
               chr28:5138793-5139060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               233, 9
               

               Conread position:
               493-769
               

               Cow position:
               chr28:21868663-21868392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               102, 8
               

               Conread position:
               494-625
               

               Cow position:
               chr28:16964757-16964889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               494-645
               

               Cow position:
               chr28:24767615-24767462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               494-658
               

               Cow position:
               chr28:4231017-4230856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               117, 88
               

               Conread position:
               494-668
               

               Cow position:
               chr28:7547003-7547174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               99
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               118, 73
               

               Conread position:
               494-684
               

               Cow position:
               chr28:11006933-11006745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               118, 35
               

               Conread position:
               494-711
               

               Cow position:
               chr28:5232147-5231930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 108
               

               Conread position:
               494-711
               

               Cow position:
               chr28:11762905-11762685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               494-727
               

               Cow position:
               chr28:31649270-31649062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               494-728
               

               Cow position:
               chr28:3410782-3411012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               116, 79
               

               Conread position:
               494-746
               

               Cow position:
               chr28:14710546-14710293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               118, 37
               

               Conread position:
               494-759
               

               Cow position:
               chr28:33884610-33884347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               14, 88
               

               Conread position:
               494-764
               

               Cow position:
               chr28:10669794-10669517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               494-764
               

               Cow position:
               chr28:17012098-17012350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               71, 34
               

               Conread position:
               494-769
               

               Cow position:
               chr28:5262726-5262457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               117, 155
               

               Conread position:
               494-776
               

               Cow position:
               chr28:23460350-23460079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               117, 10
               

               Conread position:
               495-697
               

               Cow position:
               chr28:13174348-13174558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               86, 96
               

               Conread position:
               495-705
               

               Cow position:
               chr28:17727905-17728101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               13, 73
               

               Conread position:
               495-707
               

               Cow position:
               chr28:4631224-4631435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               116, 157
               

               Conread position:
               495-714
               

               Cow position:
               chr28:24064686-24064906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               75, 36
               

               Conread position:
               495-716
               

               Cow position:
               chr28:8259839-8259615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               495-722
               

               Cow position:
               chr28:11346283-11346506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 84
               

               Conread position:
               495-722
               

               Cow position:
               chr28:16369883-16370102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               117, 51
               

               Conread position:
               495-726
               

               Cow position:
               chr28:32357515-32357276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               8, 196
               

               Conread position:
               495-742
               

               Cow position:
               chr28:17680831-17680584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 233
               

               Conread position:
               495-752
               

               Cow position:
               chr28:5236080-5235835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               196
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               495-759
               

               Cow position:
               chr28:13474505-13474247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               51, 84
               

               Conread position:
               495-764
               

               Cow position:
               chr28:29416519-29416777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               117, 69
               

               Conread position:
               495-769
               

               Cow position:
               chr28:30746532-30746791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               117, 49
               

               Conread position:
               495-776
               

               Cow position:
               chr28:19217018-19216751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 65
               

               Conread position:
               496-642
               

               Cow position:
               chr28:8165008-8165155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               496-658
               

               Cow position:
               chr28:7504086-7503923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               85, 99
               

               Conread position:
               496-693
               

               Cow position:
               chr28:19024655-19024443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               496-697
               

               Cow position:
               chr28:25973747-25973545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               496-701
               

               Cow position:
               chr28:24996413-24996611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               40, 71
               

               Conread position:
               496-707
               

               Cow position:
               chr28:30902326-30902122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               118, 78
               

               Conread position:
               496-721
               

               Cow position:
               chr28:32284035-32284256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               91, 117
               

               Conread position:
               496-722
               

               Cow position:
               chr28:4913888-4914109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               496-722
               

               Cow position:
               chr28:5236390-5236623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               496-769
               

               Cow position:
               chr28:26719535-26719287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               195
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               117, 72
               

               Conread position:
               497-709
               

               Cow position:
               chr28:26215972-26215759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               497-769
               

               Cow position:
               chr28:7512376-7512650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               15, 149
               

               Conread position:
               498-740
               

               Cow position:
               chr28:12933533-12933770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               114, 31
               

               Conread position:
               499-763
               

               Cow position:
               chr28:7267747-7268001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               196
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               116, 80
               

               Conread position:
               499-764
               

               Cow position:
               chr28:25806799-25806514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               58, 249
               

               Conread position:
               499-769
               

               Cow position:
               chr28:3914906-3914648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               113, 9
               

               Conread position:
               499-769
               

               Cow position:
               chr28:22308846-22308580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               112, 229
               

               Conread position:
               499-769
               

               Cow position:
               chr28:24082472-24082199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               113, 84
               

               Conread position:
               500-698
               

               Cow position:
               chr28:20968375-20968575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               159
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               500-764
               

               Cow position:
               chr28:16450331-16450610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               199
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               111, 132
               

               Conread position:
               501-608
               

               Cow position:
               chr28:9919969-9920074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               89
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               501-644
               

               Cow position:
               chr28:7523215-7523357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               501-651
               

               Cow position:
               chr28:16419725-16419577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               110, 23
               

               Conread position:
               501-651
               

               Cow position:
               chr28:21263354-21263209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               110, 67
               

               Conread position:
               501-659
               

               Cow position:
               chr28:16856906-16857063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               110, 83
               

               Conread position:
               501-669
               

               Cow position:
               chr28:4227676-4227510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               71, 45
               

               Conread position:
               501-676
               

               Cow position:
               chr28:21766155-21765982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               110, 27
               

               Conread position:
               501-685
               

               Cow position:
               chr28:7413863-7413677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               501-687
               

               Cow position:
               chr28:10890542-10890719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               111, 72
               

               Conread position:
               501-695
               

               Cow position:
               chr28:8716180-8716379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               160
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               83, 192
               

               Conread position:
               501-700
               

               Cow position:
               chr28:19994746-19994943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               165
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 157
               

               Conread position:
               501-711
               

               Cow position:
               chr28:29850622-29850823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               33, 27
               

               Conread position:
               501-720
               

               Cow position:
               chr28:19262384-19262606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               501-722
               

               Cow position:
               chr28:3023716-3023932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               38, 79
               

               Conread position:
               501-722
               

               Cow position:
               chr28:4186103-4185888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               174
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               113, 59
               

               Conread position:
               501-725
               

               Cow position:
               chr28:9636257-9636479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               31, 67
               

               Conread position:
               501-728
               

               Cow position:
               chr28:18770287-18770059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               72, 27
               

               Conread position:
               501-761
               

               Cow position:
               chr28:6934976-6935238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               110, 236
               

               Conread position:
               501-761
               

               Cow position:
               chr28:24672468-24672209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               188
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               110, 221
               

               Conread position:
               501-763
               

               Cow position:
               chr28:616569-616326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               112, 64
               

               Conread position:
               501-763
               

               Cow position:
               chr28:11817742-11818022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               23, 32
               

               Conread position:
               501-769
               

               Cow position:
               chr28:12951616-12951366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               202
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               110, 64
               

               Conread position:
               501-772
               

               Cow position:
               chr28:9285177-9285440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               111, 61
               

               Conread position:
               501-772
               

               Cow position:
               chr28:15601474-15601209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 42
               

               Conread position:
               502-651
               

               Cow position:
               chr28:15295437-15295288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               19, 72
               

               Conread position:
               502-659
               

               Cow position:
               chr28:8655967-8656122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               112, 50
               

               Conread position:
               502-661
               

               Cow position:
               chr28:2435838-2435990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               502-689
               

               Cow position:
               chr28:10252716-10252903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               149
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               109, 88
               

               Conread position:
               502-697
               

               Cow position:
               chr28:4074176-4073975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               161
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               85, 74
               

               Conread position:
               502-699
               

               Cow position:
               chr28:2821460-2821257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               163
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               502-705
               

               Cow position:
               chr28:34230430-34230226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               165
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               502-723
               

               Cow position:
               chr28:11016603-11016388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               110, 71
               

               Conread position:
               502-764
               

               Cow position:
               chr28:4282290-4282548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 88
               

               Conread position:
               503-666
               

               Cow position:
               chr28:16570002-16569842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               503-698
               

               Cow position:
               chr28:17656614-17656424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               108, 59
               

               Conread position:
               503-706
               

               Cow position:
               chr28:6322017-6321814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               162
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               56, 116
               

               Conread position:
               503-711
               

               Cow position:
               chr28:3200660-3200451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               503-721
               

               Cow position:
               chr28:27721894-27721681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               108, 125
               

               Conread position:
               503-725
               

               Cow position:
               chr28:26152209-26151993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               108, 78
               

               Conread position:
               503-764
               

               Cow position:
               chr28:12672263-12672521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 226
               

               Conread position:
               503-764
               

               Cow position:
               chr28:34430225-34430480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               93, 89
               

               Conread position:
               503-769
               

               Cow position:
               chr28:23579100-23578837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               84, 167
               

               Conread position:
               505-769
               

               Cow position:
               chr28:4644753-4645030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               60, 148
               

               Conread position:
               506-631
               

               Cow position:
               chr28:8141853-8141727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               26, 38
               

               Conread position:
               506-679
               

               Cow position:
               chr28:24688367-24688545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               506-763
               

               Cow position:
               chr28:25400062-25399815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               67, 23
               

               Conread position:
               506-764
               

               Cow position:
               chr28:12362965-12363218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               507-684
               

               Cow position:
               chr28:13160349-13160527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               72, 93
               

               Conread position:
               507-714
               

               Cow position:
               chr28:10700054-10699850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               106, 95
               

               Conread position:
               508-672
               

               Cow position:
               chr28:19118165-19118000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               88, 82
               

               Conread position:
               508-673
               

               Cow position:
               chr28:26269592-26269416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               508-700
               

               Cow position:
               chr28:18608172-18608365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               508-711
               

               Cow position:
               chr28:26531088-26531285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               508-714
               

               Cow position:
               chr28:30237921-30238127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               71, 61
               

               Conread position:
               508-764
               

               Cow position:
               chr28:20397173-20397429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 80
               

               Conread position:
               508-768
               

               Cow position:
               chr28:21363933-21363683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 20
               

               Conread position:
               508-769
               

               Cow position:
               chr28:17071533-17071270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               509-646
               

               Cow position:
               chr28:17060253-17060123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               109
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               101, 64
               

               Conread position:
               509-701
               

               Cow position:
               chr28:11451313-11451490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               509-709
               

               Cow position:
               chr28:16879760-16879567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               103, 64
               

               Conread position:
               509-714
               

               Cow position:
               chr28:28810148-28809944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               509-725
               

               Cow position:
               chr28:3746389-3746175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               103, 56
               

               Conread position:
               509-729
               

               Cow position:
               chr28:14644910-14645138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               509-748
               

               Cow position:
               chr28:4046036-4045805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 56
               

               Conread position:
               509-756
               

               Cow position:
               chr28:11057851-11058093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               5, 154
               

               Conread position:
               509-763
               

               Cow position:
               chr28:6975426-6975178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               104, 65
               

               Conread position:
               509-769
               

               Cow position:
               chr28:14998256-14998001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               103, 51
               

               Conread position:
               509-769
               

               Cow position:
               chr28:25728390-25728136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               50, 22
               

               Conread position:
               510-674
               

               Cow position:
               chr28:3729829-3729990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               101, 18
               

               Conread position:
               510-701
               

               Cow position:
               chr28:7557539-7557732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               510-767
               

               Cow position:
               chr28:26743822-26743563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 231
               

               Conread position:
               511-672
               

               Cow position:
               chr28:10855531-10855687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               100, 54
               

               Conread position:
               511-711
               

               Cow position:
               chr28:5188240-5188437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               100, 44
               

               Conread position:
               512-677
               

               Cow position:
               chr28:3475378-3475215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               102, 19
               

               Conread position:
               512-763
               

               Cow position:
               chr28:18369824-18370065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               192
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               99, 136
               

               Conread position:
               513-718
               

               Cow position:
               chr28:12430795-12430591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               99, 90
               

               Conread position:
               513-725
               

               Cow position:
               chr28:20406214-20406014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               514-689
               

               Cow position:
               chr28:26530680-26530852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               97, 66
               

               Conread position:
               516-726
               

               Cow position:
               chr28:34442571-34442781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               95, 78
               

               Conread position:
               516-764
               

               Cow position:
               chr28:16210916-16211162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               101, 75
               

               Conread position:
               517-728
               

               Cow position:
               chr28:3741053-3740851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               97, 45
               

               Conread position:
               517-767
               

               Cow position:
               chr28:10745399-10745151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               69, 86
               

               Conread position:
               519-716
               

               Cow position:
               chr28:9384109-9384300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               95, 73
               

               Conread position:
               520-714
               

               Cow position:
               chr28:26055659-26055469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               93, 54
               

               Conread position:
               520-729
               

               Cow position:
               chr28:13938012-13938227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               520-764
               

               Cow position:
               chr28:4138486-4138725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               73, 212
               

               Conread position:
               520-769
               

               Cow position:
               chr28:30303027-30303257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               179, 44
               

               Conread position:
               526-730
               

               Cow position:
               chr28:2899173-2898962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               164
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               526-764
               

               Cow position:
               chr28:23676317-23676080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               27, 74
               

               Conread position:
               527-767
               

               Cow position:
               chr28:11559459-11559697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 22
               

               Conread position:
               531-684
               

               Cow position:
               chr28:25459923-25459772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               80, 7
               

               Conread position:
               531-769
               

               Cow position:
               chr28:26103868-26103645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               156, 53
               

               Conread position:
               532-716
               

               Cow position:
               chr28:19294964-19295142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               80, 49
               

               Conread position:
               532-746
               

               Cow position:
               chr28:3408053-3408261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               80, 37
               

               Conread position:
               534-680
               

               Cow position:
               chr28:4311496-4311637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               78, 31
               

               Conread position:
               534-746
               

               Cow position:
               chr28:23793144-23793351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               77, 35
               

               Conread position:
               534-764
               

               Cow position:
               chr28:7437299-7437518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               21, 111
               

               Conread position:
               541-690
               

               Cow position:
               chr28:7541704-7541863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               541-699
               

               Cow position:
               chr28:8167193-8167346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               71, 45
               

               Conread position:
               546-670
               

               Cow position:
               chr28:2090688-2090564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               99
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               65, 52
               

               Conread position:
               549-706
               

               Cow position:
               chr28:13241409-13241568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               557-725
               

               Cow position:
               chr28:2772855-2772691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               57, 24
               

               Conread position:
               557-727
               

               Cow position:
               chr28:8149485-8149655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               55, 162
               

               Conread position:
               557-748
               

               Cow position:
               chr28:7156981-7156791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               55, 13
               

               Conread position:
               558-706
               

               Cow position:
               chr28:5771507-5771367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               558-711
               

               Cow position:
               chr28:30081579-30081732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               53, 41
               

               Conread position:
               558-758
               

               Cow position:
               chr28:17601408-17601605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               160
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               54, 164
               

               Conread position:
               559-698
               

               Cow position:
               chr28:34097476-34097610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               559-729
               

               Cow position:
               chr28:17136148-17136322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               38, 11
               

               Conread position:
               560-698
               

               Cow position:
               chr28:2743226-2743086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               560-699
               

               Cow position:
               chr28:12385150-12385289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               52, 30
               

               Conread position:
               560-701
               

               Cow position:
               chr28:29041908-29042052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               560-706
               

               Cow position:
               chr28:7684560-7684700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               112
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               51, 98
               

               Conread position:
               560-748
               

               Cow position:
               chr28:7498003-7498192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               57, 151
               

               Conread position:
               560-762
               

               Cow position:
               chr28:32174775-32174573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               17, 147
               

               Conread position:
               560-764
               

               Cow position:
               chr28:2752350-2752553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               52, 162
               

               Conread position:
               560-764
               

               Cow position:
               chr28:19025863-19026070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               54, 21
               

               Conread position:
               560-764
               

               Cow position:
               chr28:25195845-25195653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               54, 30
               

               Conread position:
               560-764
               

               Cow position:
               chr28:31109857-31110062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               36, 162
               

               Conread position:
               560-769
               

               Cow position:
               chr28:8147720-8147925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               52, 81
               

               Conread position:
               560-769
               

               Cow position:
               chr28:16110081-16109873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               52, 88
               

               Conread position:
               560-769
               

               Cow position:
               chr28:25677198-25677410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               52, 12
               

               Conread position:
               560-772
               

               Cow position:
               chr28:7388629-7388833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               8, 27
               

               Conread position:
               563-743
               

               Cow position:
               chr28:5867867-5867687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               26, 124
               

               Conread position:
               563-769
               

               Cow position:
               chr28:3160816-3161017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               48, 26
               

               Conread position:
               564-667
               

               Cow position:
               chr28:24674609-24674505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               90
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               48, 30
               

               Conread position:
               564-677
               

               Cow position:
               chr28:8258964-8258850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               90
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               564-687
               

               Cow position:
               chr28:11365389-11365511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               47, 28
               

               Conread position:
               564-762
               

               Cow position:
               chr28:4841250-4841455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               21, 29
               

               Conread position:
               564-767
               

               Cow position:
               chr28:22321556-22321365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               48, 14
               

               Conread position:
               565-764
               

               Cow position:
               chr28:19079706-19079901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               47, 170
               

               Conread position:
               566-704
               

               Cow position:
               chr28:4355684-4355547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               566-718
               

               Cow position:
               chr28:17398096-17398249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               566-718
               

               Cow position:
               chr28:17414337-17414490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               566-764
               

               Cow position:
               chr28:20313417-20313216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               19, 171
               

               Conread position:
               568-684
               

               Cow position:
               chr28:9430591-9430708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               46, 8
               

               Conread position:
               568-693
               

               Cow position:
               chr28:7265481-7265355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               97
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               568-761
               

               Cow position:
               chr28:2131788-2131982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               49, 149
               

               Conread position:
               569-707
               

               Cow position:
               chr28:5229995-5230129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               106
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               43, 71
               

               Conread position:
               569-721
               

               Cow position:
               chr28:25763156-25763004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               43, 22
               

               Conread position:
               569-758
               

               Cow position:
               chr28:5650603-5650790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               70, 49
               

               Conread position:
               569-764
               

               Cow position:
               chr28:13090391-13090585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               43, 126
               

               Conread position:
               569-769
               

               Cow position:
               chr28:25249487-25249290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               43, 11
               

               Conread position:
               571-700
               

               Cow position:
               chr28:18533774-18533903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               99
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               39, 24
               

               Conread position:
               571-722
               

               Cow position:
               chr28:23047751-23047601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               41, 122
               

               Conread position:
               571-764
               

               Cow position:
               chr28:30865548-30865359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               40, 12
               

               Conread position:
               571-769
               

               Cow position:
               chr28:21355364-21355160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               575-716
               

               Cow position:
               chr28:10163926-10163787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               37, 108
               

               Conread position:
               575-764
               

               Cow position:
               chr28:4765804-4765617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               36, 15
               

               Conread position:
               578-762
               

               Cow position:
               chr28:7805295-7805481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               15, 126
               

               Conread position:
               579-677
               

               Cow position:
               chr28:16353568-16353667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               83
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               579-722
               

               Cow position:
               chr28:14934083-14933939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               581-763
               

               Cow position:
               chr28:5166890-5166709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               30, 72
               

               Conread position:
               582-695
               

               Cow position:
               chr28:10247610-10247497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               32, 20
               

               Conread position:
               582-698
               

               Cow position:
               chr28:16692045-16691928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               582-762
               

               Cow position:
               chr28:26685233-26685058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               140, 21
               

               Conread position:
               582-763
               

               Cow position:
               chr28:26922246-26922424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               30, 146
               

               Conread position:
               583-763
               

               Cow position:
               chr28:21598130-21598311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               22, 7
               

               Conread position:
               585-691
               

               Cow position:
               chr28:30065569-30065463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               89
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               29, 7
               

               Conread position:
               587-754
               

               Cow position:
               chr28:2762311-2762145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               30, 5
               

               Conread position:
               590-764
               

               Cow position:
               chr28:11786603-11786776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               22, 142
               

               Conread position:
               592-697
               

               Cow position:
               chr28:16389018-16388912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               107
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               592-769
               

               Cow position:
               chr28:21380992-21380815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               148
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               26, 14
               

               Conread position:
               594-769
               

               Cow position:
               chr28:32365953-32365779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               18, 8
               

               Conread position:
               611-769
               

               Cow position:
               chr28:18186648-18186491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               102, 91
               

               Conread position:
               611-772
               

               Cow position:
               chr28:5792800-5792640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               119, 0
               
Show alignments to all cow chromosomes.
Conread position:	399-728
Cow position:	chr28:4810075-4809754 (view UCSC Genome Browser custom track)
Alignm length:	338
Alignm identity:	226
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	85, 10
Conread position:	403-754
Cow position:	chr28:5685000-5684657 (view UCSC Genome Browser custom track)
Alignm length:	356
Alignm identity:	211
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	91, 19
Conread position:	415-744
Cow position:	chr28:17948836-17949154 (view UCSC Genome Browser custom track)
Alignm length:	331
Alignm identity:	220
Alignm E-value:	3e-33
Alignm gaps (pig, cow):	199, 47
Conread position:	427-698
Cow position:	chr28:4022947-4022678 (view UCSC Genome Browser custom track)
Alignm length:	275
Alignm identity:	212
Alignm E-value:	0
Alignm gaps (pig, cow):	38, 96
Conread position:	440-712
Cow position:	chr28:18797567-18797311 (view UCSC Genome Browser custom track)
Alignm length:	274
Alignm identity:	201
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	9, 66
Conread position:	446-734
Cow position:	chr28:22332785-22332495 (view UCSC Genome Browser custom track)
Alignm length:	294
Alignm identity:	198
Alignm E-value:	1e-32
Alignm gaps (pig, cow):	41, 68
Conread position:	448-725
Cow position:	chr28:8304497-8304225 (view UCSC Genome Browser custom track)
Alignm length:	282
Alignm identity:	198
Alignm E-value:	4e-35
Alignm gaps (pig, cow):	9, 131
Conread position:	450-730
Cow position:	chr28:11307268-11307547 (view UCSC Genome Browser custom track)
Alignm length:	286
Alignm identity:	218
Alignm E-value:	0
Alignm gaps (pig, cow):	42, 18
Conread position:	452-692
Cow position:	chr28:13448364-13448134 (view UCSC Genome Browser custom track)
Alignm length:	243
Alignm identity:	184
Alignm E-value:	1.99993e-41
Alignm gaps (pig, cow):	18, 43
Conread position:	452-764
Cow position:	chr28:11884280-11884578 (view UCSC Genome Browser custom track)
Alignm length:	317
Alignm identity:	216
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	20, 7
Conread position:	454-692
Cow position:	chr28:5402796-5403031 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	175
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	36, 7
Conread position:	457-722
Cow position:	chr28:11398552-11398816 (view UCSC Genome Browser custom track)
Alignm length:	267
Alignm identity:	208
Alignm E-value:	0
Alignm gaps (pig, cow):	154, 27
Conread position:	461-722
Cow position:	chr28:2820014-2819756 (view UCSC Genome Browser custom track)
Alignm length:	267
Alignm identity:	191
Alignm E-value:	5e-37
Alignm gaps (pig, cow):	30, 77
Conread position:	462-764
Cow position:	chr28:21502617-21502335 (view UCSC Genome Browser custom track)
Alignm length:	303
Alignm identity:	205
Alignm E-value:	6e-28
Alignm gaps (pig, cow):	14, 0
Conread position:	464-658
Cow position:	chr28:21118917-21118722 (view UCSC Genome Browser custom track)
Alignm length:	197
Alignm identity:	156
Alignm E-value:	8.99634e-43
Alignm gaps (pig, cow):	24, 6
Conread position:	464-661
Cow position:	chr28:29500648-29500442 (view UCSC Genome Browser custom track)
Alignm length:	207
Alignm identity:	153
Alignm E-value:	3e-31
Alignm gaps (pig, cow):	33, 0
Conread position:	464-766
Cow position:	chr28:11866430-11866727 (view UCSC Genome Browser custom track)
Alignm length:	306
Alignm identity:	246
Alignm E-value:	0
Alignm gaps (pig, cow):	14, 100
Conread position:	465-579
Cow position:	chr28:14660199-14660085 (view UCSC Genome Browser custom track)
Alignm length:	115
Alignm identity:	89
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	0, 0
Conread position:	466-667
Cow position:	chr28:25805912-25806115 (view UCSC Genome Browser custom track)
Alignm length:	204
Alignm identity:	141
Alignm E-value:	5e-26
Alignm gaps (pig, cow):	24, 0
Conread position:	466-679
Cow position:	chr28:7964446-7964654 (view UCSC Genome Browser custom track)
Alignm length:	214
Alignm identity:	159
Alignm E-value:	4e-36
Alignm gaps (pig, cow):	29, 0