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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8041I01.3
        

               
Conread position:
               
388-587
               

               
Cow position:
               
chr6:52717633-52717825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
395-769
               

               
Cow position:
               
chr6:11247099-11246734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 52
               

               
Conread position:
               
418-763
               

               
Cow position:
               
chr6:58460037-58459701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 136
               

               
Conread position:
               
426-638
               

               
Cow position:
               
chr6:54208312-54208527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 188
               

               
Conread position:
               
426-704
               

               
Cow position:
               
chr6:3937096-3936818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
444-658
               

               
Cow position:
               
chr6:59687516-59687733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
444-757
               

               
Cow position:
               
chr6:50467427-50467116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
6, 26
               

               
Conread position:
               
445-695
               

               
Cow position:
               
chr6:36164036-36163786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
166, 57
               

               
Conread position:
               
447-769
               

               
Cow position:
               
chr6:6201719-6201399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 17
               

               
Conread position:
               
447-769
               

               
Cow position:
               
chr6:31535283-31535600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
448-764
               

               
Cow position:
               
chr6:45606164-45606488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
449-679
               

               
Cow position:
               
chr6:31521160-31520928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
39, 213
               

               
Conread position:
               
449-714
               

               
Cow position:
               
chr6:46187148-46187419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
449-722
               

               
Cow position:
               
chr6:55030621-55030340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 54
               

               
Conread position:
               
449-743
               

               
Cow position:
               
chr6:10466374-10466089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
209, 16
               

               
Conread position:
               
450-769
               

               
Cow position:
               
chr6:51538787-51539112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
161, 9
               

               
Conread position:
               
451-721
               

               
Cow position:
               
chr6:14056182-14056454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
451-764
               

               
Cow position:
               
chr6:17997031-17997340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
455-712
               

               
Cow position:
               
chr6:55054323-55054062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
456-675
               

               
Cow position:
               
chr6:18152670-18152454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 74
               

               
Conread position:
               
457-728
               

               
Cow position:
               
chr6:33207006-33206744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
235, 18
               

               
Conread position:
               
459-685
               

               
Cow position:
               
chr6:58691203-58690979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
152, 36
               

               
Conread position:
               
459-690
               

               
Cow position:
               
chr6:55518154-55517923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
460-769
               

               
Cow position:
               
chr6:65264276-65264567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 16
               

               
Conread position:
               
461-711
               

               
Cow position:
               
chr6:42035045-42034799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
158, 106
               

               
Conread position:
               
462-769
               

               
Cow position:
               
chr6:61269588-61269281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
464-645
               

               
Cow position:
               
chr6:15111566-15111749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
464-671
               

               
Cow position:
               
chr6:14150109-14150313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
148, 70
               

               
Conread position:
               
464-685
               

               
Cow position:
               
chr6:31793351-31793568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
464-690
               

               
Cow position:
               
chr6:5601968-5601750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 12
               

               
Conread position:
               
464-714
               

               
Cow position:
               
chr6:52592338-52592594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
464-742
               

               
Cow position:
               
chr6:8731688-8731400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
464-769
               

               
Cow position:
               
chr6:9008357-9008640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
148, 19
               

               
Conread position:
               
464-769
               

               
Cow position:
               
chr6:19446526-19446224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 200
               

               
Conread position:
               
464-772
               

               
Cow position:
               
chr6:5330688-5330378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
465-563
               

               
Cow position:
               
chr6:38234527-38234431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
465-639
               

               
Cow position:
               
chr6:55196485-55196311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
122, 19
               

               
Conread position:
               
465-659
               

               
Cow position:
               
chr6:16387433-16387628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
465-697
               

               
Cow position:
               
chr6:8315654-8315423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
146, 9
               

               
Conread position:
               
465-700
               

               
Cow position:
               
chr6:45920951-45921176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
146, 29
               

               
Conread position:
               
465-720
               

               
Cow position:
               
chr6:18080243-18080497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
465-730
               

               
Cow position:
               
chr6:21587159-21587422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
465-752
               

               
Cow position:
               
chr6:15243533-15243242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
465-764
               

               
Cow position:
               
chr6:62370916-62371198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
145, 60
               

               
Conread position:
               
466-680
               

               
Cow position:
               
chr6:18440204-18440420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
466-690
               

               
Cow position:
               
chr6:27636586-27636362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
466-692
               

               
Cow position:
               
chr6:8186918-8187144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 36
               

               
Conread position:
               
466-695
               

               
Cow position:
               
chr6:145021-144799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
466-722
               

               
Cow position:
               
chr6:20896915-20897171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 134
               

               
Conread position:
               
466-764
               

               
Cow position:
               
chr6:7128134-7128430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
146, 108
               

               
Conread position:
               
466-768
               

               
Cow position:
               
chr6:10176031-10176324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 10
               

               
Conread position:
               
466-769
               

               
Cow position:
               
chr6:20157607-20157302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
14, 100
               

               
Conread position:
               
467-680
               

               
Cow position:
               
chr6:14263619-14263833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
467-711
               

               
Cow position:
               
chr6:65712086-65711842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
467-714
               

               
Cow position:
               
chr6:6227467-6227714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
144, 17
               

               
Conread position:
               
467-716
               

               
Cow position:
               
chr6:67215043-67214771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
467-721
               

               
Cow position:
               
chr6:21715322-21715065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
467-722
               

               
Cow position:
               
chr6:59104877-59104615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
16, 96
               

               
Conread position:
               
467-723
               

               
Cow position:
               
chr6:65676511-65676258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
146, 7
               

               
Conread position:
               
467-724
               

               
Cow position:
               
chr6:1475609-1475356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
467-728
               

               
Cow position:
               
chr6:67069550-67069808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
143, 31
               

               
Conread position:
               
467-764
               

               
Cow position:
               
chr6:1370963-1371250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
467-764
               

               
Cow position:
               
chr6:19293066-19292773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
141, 35
               

               
Conread position:
               
467-764
               

               
Cow position:
               
chr6:30122899-30123213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
147, 39
               

               
Conread position:
               
467-769
               

               
Cow position:
               
chr6:60784142-60783840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
468-586
               

               
Cow position:
               
chr6:58636408-58636285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
468-606
               

               
Cow position:
               
chr6:17244048-17243913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
468-615
               

               
Cow position:
               
chr6:51019418-51019272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
468-680
               

               
Cow position:
               
chr6:40833752-40833951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
143, 63
               

               
Conread position:
               
468-683
               

               
Cow position:
               
chr6:6850594-6850376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
468-701
               

               
Cow position:
               
chr6:29852786-29853028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
11, 212
               

               
Conread position:
               
468-709
               

               
Cow position:
               
chr6:40879056-40878806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
92, 8
               

               
Conread position:
               
468-714
               

               
Cow position:
               
chr6:28852245-28851997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
468-749
               

               
Cow position:
               
chr6:51580987-51581264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
178, 115
               

               
Conread position:
               
468-764
               

               
Cow position:
               
chr6:18608544-18608839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
235, 8
               

               
Conread position:
               
469-659
               

               
Cow position:
               
chr6:29851636-29851447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
18, 123
               

               
Conread position:
               
469-673
               

               
Cow position:
               
chr6:50577782-50577585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
145, 59
               

               
Conread position:
               
469-688
               

               
Cow position:
               
chr6:35702056-35702295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
469-693
               

               
Cow position:
               
chr6:30983782-30983564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
469-696
               

               
Cow position:
               
chr6:40030165-40029938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
469-711
               

               
Cow position:
               
chr6:53454033-53453789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
119, 63
               

               
Conread position:
               
469-714
               

               
Cow position:
               
chr6:93931-94172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
469-714
               

               
Cow position:
               
chr6:2897008-2896762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
139, 130
               

               
Conread position:
               
469-722
               

               
Cow position:
               
chr6:12623778-12623531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
36, 100
               

               
Conread position:
               
469-729
               

               
Cow position:
               
chr6:16380813-16380548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
469-759
               

               
Cow position:
               
chr6:23401726-23402009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
469-763
               

               
Cow position:
               
chr6:16700526-16700242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 156
               

               
Conread position:
               
469-764
               

               
Cow position:
               
chr6:9750777-9751077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
469-767
               

               
Cow position:
               
chr6:47779144-47778846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
143, 15
               

               
Conread position:
               
469-769
               

               
Cow position:
               
chr6:54365066-54365359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
470-670
               

               
Cow position:
               
chr6:62224687-62224489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
123, 58
               

               
Conread position:
               
470-677
               

               
Cow position:
               
chr6:53267536-53267327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
470-689
               

               
Cow position:
               
chr6:67290384-67290608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
470-695
               

               
Cow position:
               
chr6:60852367-60852601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
115, 191
               

               
Conread position:
               
470-696
               

               
Cow position:
               
chr6:24776404-24776180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
141, 52
               

               
Conread position:
               
470-705
               

               
Cow position:
               
chr6:12761546-12761312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
30, 5
               

               
Conread position:
               
470-707
               

               
Cow position:
               
chr6:26006034-26005794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
470-711
               

               
Cow position:
               
chr6:9736378-9736629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
28, 147
               

               
Conread position:
               
470-714
               

               
Cow position:
               
chr6:55548267-55548510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
470-722
               

               
Cow position:
               
chr6:17705099-17704847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
141, 6
               

               
Conread position:
               
470-725
               

               
Cow position:
               
chr6:42483682-42483428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 127
               

               
Conread position:
               
470-728
               

               
Cow position:
               
chr6:27605068-27605333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
6, 199
               

               
Conread position:
               
470-744
               

               
Cow position:
               
chr6:239654-239938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
470-764
               

               
Cow position:
               
chr6:3952788-3952494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 250
               

               
Conread position:
               
470-764
               

               
Cow position:
               
chr6:6264917-6264617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
141, 29
               

               
Conread position:
               
470-769
               

               
Cow position:
               
chr6:23353821-23353524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 24
               

               
Conread position:
               
470-769
               

               
Cow position:
               
chr6:51541281-51540979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 276
               

               
Conread position:
               
471-661
               

               
Cow position:
               
chr6:16522650-16522842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 176
               

               
Conread position:
               
471-685
               

               
Cow position:
               
chr6:54622700-54622912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
108, 12
               

               
Conread position:
               
471-687
               

               
Cow position:
               
chr6:35984872-35985086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
471-722
               

               
Cow position:
               
chr6:26638660-26638397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
471-740
               

               
Cow position:
               
chr6:3351292-3351026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
471-769
               

               
Cow position:
               
chr6:33510053-33509761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
472-608
               

               
Cow position:
               
chr6:32458868-32458728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 29
               

               
Conread position:
               
472-705
               

               
Cow position:
               
chr6:22876663-22876898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
472-769
               

               
Cow position:
               
chr6:31564090-31564368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
244, 17
               

               
Conread position:
               
473-606
               

               
Cow position:
               
chr6:27074579-27074445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 102
               

               
Conread position:
               
473-659
               

               
Cow position:
               
chr6:16627995-16627813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
473-666
               

               
Cow position:
               
chr6:55061133-55060934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
473-678
               

               
Cow position:
               
chr6:60347363-60347568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
114, 22
               

               
Conread position:
               
473-689
               

               
Cow position:
               
chr6:632979-633204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
473-692
               

               
Cow position:
               
chr6:49173287-49173512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
473-695
               

               
Cow position:
               
chr6:11867013-11867237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
473-696
               

               
Cow position:
               
chr6:52025096-52025330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
473-697
               

               
Cow position:
               
chr6:19810207-19809976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
473-707
               

               
Cow position:
               
chr6:16091158-16090934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
137, 28
               

               
Conread position:
               
473-714
               

               
Cow position:
               
chr6:34560736-34560980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
473-723
               

               
Cow position:
               
chr6:3464553-3464310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
138, 29
               

               
Conread position:
               
473-723
               

               
Cow position:
               
chr6:22849990-22850240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
138, 29
               

               
Conread position:
               
473-728
               

               
Cow position:
               
chr6:50810413-50810662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
138, 26
               

               
Conread position:
               
473-732
               

               
Cow position:
               
chr6:37693013-37692757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
473-743
               

               
Cow position:
               
chr6:21475988-21475720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 58
               

               
Conread position:
               
473-760
               

               
Cow position:
               
chr6:50863211-50862920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
473-764
               

               
Cow position:
               
chr6:27239740-27240030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
474-576
               

               
Cow position:
               
chr6:32809582-32809478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 97
               

               
Conread position:
               
474-596
               

               
Cow position:
               
chr6:21200335-21200214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
474-606
               

               
Cow position:
               
chr6:54344362-54344231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
474-614
               

               
Cow position:
               
chr6:19681980-19681840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 135
               

               
Conread position:
               
474-627
               

               
Cow position:
               
chr6:51649090-51648935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
474-645
               

               
Cow position:
               
chr6:26072966-26073126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
474-659
               

               
Cow position:
               
chr6:10163935-10163744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
474-659
               

               
Cow position:
               
chr6:14152629-14152812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
107, 53
               

               
Conread position:
               
474-659
               

               
Cow position:
               
chr6:16137507-16137692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
125, 14
               

               
Conread position:
               
474-666
               

               
Cow position:
               
chr6:36891907-36891723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
474-680
               

               
Cow position:
               
chr6:55015144-55014936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
119, 28
               

               
Conread position:
               
474-685
               

               
Cow position:
               
chr6:224483-224689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
137, 27
               

               
Conread position:
               
474-685
               

               
Cow position:
               
chr6:31471346-31471127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
474-685
               

               
Cow position:
               
chr6:33960386-33960597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
106, 120
               

               
Conread position:
               
474-688
               

               
Cow position:
               
chr6:19052882-19052666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
474-691
               

               
Cow position:
               
chr6:44541067-44540855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
17, 114
               

               
Conread position:
               
474-691
               

               
Cow position:
               
chr6:44543885-44544101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 116
               

               
Conread position:
               
474-695
               

               
Cow position:
               
chr6:15974259-15974477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
474-702
               

               
Cow position:
               
chr6:56061926-56061696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
474-705
               

               
Cow position:
               
chr6:64380700-64380468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
474-707
               

               
Cow position:
               
chr6:13040712-13040471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
474-709
               

               
Cow position:
               
chr6:61978692-61978454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
474-711
               

               
Cow position:
               
chr6:2547520-2547282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
474-711
               

               
Cow position:
               
chr6:64428930-64429169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
5, 177
               

               
Conread position:
               
474-714
               

               
Cow position:
               
chr6:50269416-50269659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
16, 129
               

               
Conread position:
               
474-720
               

               
Cow position:
               
chr6:15587331-15587576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 13
               

               
Conread position:
               
474-723
               

               
Cow position:
               
chr6:6063028-6063279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
474-725
               

               
Cow position:
               
chr6:26155404-26155161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
140, 15
               

               
Conread position:
               
474-734
               

               
Cow position:
               
chr6:20371566-20371295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
112, 21
               

               
Conread position:
               
474-746
               

               
Cow position:
               
chr6:1704056-1703798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
136, 48
               

               
Conread position:
               
474-753
               

               
Cow position:
               
chr6:32453648-32453373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 13
               

               
Conread position:
               
474-763
               

               
Cow position:
               
chr6:28559803-28559503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 9
               

               
Conread position:
               
474-763
               

               
Cow position:
               
chr6:46558314-46558031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 27
               

               
Conread position:
               
474-763
               

               
Cow position:
               
chr6:47959065-47958789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 27
               

               
Conread position:
               
474-764
               

               
Cow position:
               
chr6:17557641-17557358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
8, 98
               

               
Conread position:
               
474-764
               

               
Cow position:
               
chr6:54854510-54854218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
137, 27
               

               
Conread position:
               
474-764
               

               
Cow position:
               
chr6:68128001-68127723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
474-767
               

               
Cow position:
               
chr6:17313998-17313707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 9
               

               
Conread position:
               
474-767
               

               
Cow position:
               
chr6:67728640-67728343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 269
               

               
Conread position:
               
474-768
               

               
Cow position:
               
chr6:8562980-8562692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
474-768
               

               
Cow position:
               
chr6:62929761-62929467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 230
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chr6:41244648-41244928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
18, 135
               

               
Conread position:
               
474-772
               

               
Cow position:
               
chr6:13565345-13565052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 10
               

               
Conread position:
               
475-606
               

               
Cow position:
               
chr6:24362035-24362165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
475-627
               

               
Cow position:
               
chr6:67810728-67810874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
136, 19
               

               
Conread position:
               
475-652
               

               
Cow position:
               
chr6:12099432-12099601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
137, 14
               

               
Conread position:
               
475-652
               

               
Cow position:
               
chr6:31928899-31928722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 9
               

               
Conread position:
               
475-673
               

               
Cow position:
               
chr6:37994466-37994273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
475-680
               

               
Cow position:
               
chr6:410959-411158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
475-685
               

               
Cow position:
               
chr6:44566688-44566477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
475-696
               

               
Cow position:
               
chr6:6614885-6614662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
105, 27
               

               
Conread position:
               
475-711
               

               
Cow position:
               
chr6:10225386-10225620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
30, 197
               

               
Conread position:
               
475-711
               

               
Cow position:
               
chr6:60850962-60850727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 92
               

               
Conread position:
               
475-714
               

               
Cow position:
               
chr6:54035878-54036118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
16, 225
               

               
Conread position:
               
475-717
               

               
Cow position:
               
chr6:42728906-42728666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
475-722
               

               
Cow position:
               
chr6:55375913-55376162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
97, 221
               

               
Conread position:
               
475-759
               

               
Cow position:
               
chr6:36808939-36809227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
19, 133
               

               
Conread position:
               
475-760
               

               
Cow position:
               
chr6:52430759-52431047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
135, 27
               

               
Conread position:
               
475-761
               

               
Cow position:
               
chr6:32287891-32287617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
475-764
               

               
Cow position:
               
chr6:48282257-48281968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
18, 270
               

               
Conread position:
               
475-769
               

               
Cow position:
               
chr6:21399491-21399787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 66
               

               
Conread position:
               
475-769
               

               
Cow position:
               
chr6:24781289-24781583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
28, 157
               

               
Conread position:
               
475-769
               

               
Cow position:
               
chr6:37395140-37395437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
475-769
               

               
Cow position:
               
chr6:40050334-40050040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
476-579
               

               
Cow position:
               
chr6:16762369-16762472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
476-601
               

               
Cow position:
               
chr6:28620361-28620232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
476-617
               

               
Cow position:
               
chr6:456692-456831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
136, 19
               

               
Conread position:
               
476-628
               

               
Cow position:
               
chr6:30881066-30881218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
476-645
               

               
Cow position:
               
chr6:16016296-16016126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 124
               

               
Conread position:
               
476-652
               

               
Cow position:
               
chr6:67211666-67211839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
476-656
               

               
Cow position:
               
chr6:59101059-59101240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
476-659
               

               
Cow position:
               
chr6:53732244-53732060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
476-661
               

               
Cow position:
               
chr6:48584251-48584442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
476-666
               

               
Cow position:
               
chr6:44123582-44123401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
136, 69
               

               
Conread position:
               
476-666
               

               
Cow position:
               
chr6:67963803-67963984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
46, 54
               

               
Conread position:
               
476-668
               

               
Cow position:
               
chr6:58666559-58666751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
135, 127
               

               
Conread position:
               
476-675
               

               
Cow position:
               
chr6:58200379-58200180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
476-677
               

               
Cow position:
               
chr6:54889860-54889660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
97, 24
               

               
Conread position:
               
476-677
               

               
Cow position:
               
chr6:67543798-67543997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
136, 19
               

               
Conread position:
               
476-680
               

               
Cow position:
               
chr6:21052187-21052392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 26
               

               
Conread position:
               
476-680
               

               
Cow position:
               
chr6:48892094-48892302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
476-680
               

               
Cow position:
               
chr6:68594246-68594043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
476-683
               

               
Cow position:
               
chr6:54679794-54679582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
476-686
               

               
Cow position:
               
chr6:52190690-52190895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 107
               

               
Conread position:
               
476-688
               

               
Cow position:
               
chr6:16411873-16411664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 188
               

               
Conread position:
               
476-689
               

               
Cow position:
               
chr6:33302654-33302444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 8
               

               
Conread position:
               
476-695
               

               
Cow position:
               
chr6:47151078-47150861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
136, 97
               

               
Conread position:
               
476-697
               

               
Cow position:
               
chr6:59015320-59015529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
476-711
               

               
Cow position:
               
chr6:1090842-1090607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
135, 18
               

               
Conread position:
               
476-714
               

               
Cow position:
               
chr6:16746606-16746367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
476-714
               

               
Cow position:
               
chr6:50747266-50747022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 184
               

               
Conread position:
               
476-714
               

               
Cow position:
               
chr6:54846016-54846255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
476-714
               

               
Cow position:
               
chr6:54849192-54848952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
476-724
               

               
Cow position:
               
chr6:57115343-57115089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
476-727
               

               
Cow position:
               
chr6:8688591-8688838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 26
               

               
Conread position:
               
476-730
               

               
Cow position:
               
chr6:68644253-68643995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
476-742
               

               
Cow position:
               
chr6:60273755-60274015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
132, 13
               

               
Conread position:
               
476-749
               

               
Cow position:
               
chr6:68376057-68376334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
87, 25
               

               
Conread position:
               
476-761
               

               
Cow position:
               
chr6:21293236-21293518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
20, 105
               

               
Conread position:
               
476-763
               

               
Cow position:
               
chr6:62683638-62683343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
476-764
               

               
Cow position:
               
chr6:53145417-53145707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
476-764
               

               
Cow position:
               
chr6:60057378-60057678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
101, 268
               

               
Conread position:
               
476-767
               

               
Cow position:
               
chr6:51529930-51530212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 53
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chr6:16266988-16266693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chr6:23024838-23025142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chr6:52478151-52478443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
136, 105
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chr6:64432192-64431906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 23
               

               
Conread position:
               
476-772
               

               
Cow position:
               
chr6:5095282-5095579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 52
               

               
Conread position:
               
476-773
               

               
Cow position:
               
chr6:62056871-62056576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
136, 101
               

               
Conread position:
               
477-583
               

               
Cow position:
               
chr6:37603924-37603817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
477-606
               

               
Cow position:
               
chr6:47771990-47771861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
477-623
               

               
Cow position:
               
chr6:55764296-55764147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
477-658
               

               
Cow position:
               
chr6:47790538-47790720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 118
               

               
Conread position:
               
477-660
               

               
Cow position:
               
chr6:54840242-54840430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
477-685
               

               
Cow position:
               
chr6:18776504-18776303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
477-696
               

               
Cow position:
               
chr6:55044382-55044600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
477-698
               

               
Cow position:
               
chr6:24491290-24491068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
134, 29
               

               
Conread position:
               
477-703
               

               
Cow position:
               
chr6:37092104-37092328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
477-707
               

               
Cow position:
               
chr6:20364198-20364434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
119, 7
               

               
Conread position:
               
477-721
               

               
Cow position:
               
chr6:55609969-55610220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
477-724
               

               
Cow position:
               
chr6:24183296-24183545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
477-725
               

               
Cow position:
               
chr6:18447255-18447502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 186
               

               
Conread position:
               
477-749
               

               
Cow position:
               
chr6:13653602-13653341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
477-763
               

               
Cow position:
               
chr6:7801143-7801417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 24
               

               
Conread position:
               
477-764
               

               
Cow position:
               
chr6:48010267-48010544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
114, 12
               

               
Conread position:
               
477-764
               

               
Cow position:
               
chr6:53932585-53932871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 122
               

               
Conread position:
               
477-769
               

               
Cow position:
               
chr6:3596051-3595762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
477-769
               

               
Cow position:
               
chr6:5844910-5845201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
136, 7
               

               
Conread position:
               
477-769
               

               
Cow position:
               
chr6:47711893-47712201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
135, 61
               

               
Conread position:
               
477-769
               

               
Cow position:
               
chr6:54207871-54208166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
477-772
               

               
Cow position:
               
chr6:59602959-59603243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
137, 12
               

               
Conread position:
               
478-618
               

               
Cow position:
               
chr6:33461638-33461503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
134, 77
               

               
Conread position:
               
478-644
               

               
Cow position:
               
chr6:35775744-35775575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
478-655
               

               
Cow position:
               
chr6:44474820-44474642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
478-680
               

               
Cow position:
               
chr6:66293741-66293542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
133, 56
               

               
Conread position:
               
478-684
               

               
Cow position:
               
chr6:19722865-19722660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
478-689
               

               
Cow position:
               
chr6:48893671-48893883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
478-696
               

               
Cow position:
               
chr6:35726350-35726136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
478-705
               

               
Cow position:
               
chr6:55721866-55721653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 130
               

               
Conread position:
               
478-713
               

               
Cow position:
               
chr6:41657522-41657292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 24
               

               
Conread position:
               
478-721
               

               
Cow position:
               
chr6:57962141-57962387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
196, 53
               

               
Conread position:
               
478-723
               

               
Cow position:
               
chr6:53138682-53138923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
133, 23
               

               
Conread position:
               
478-724
               

               
Cow position:
               
chr6:44636255-44636485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
478-724
               

               
Cow position:
               
chr6:60859040-60859291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
478-729
               

               
Cow position:
               
chr6:35171872-35171612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
67, 111
               

               
Conread position:
               
478-729
               

               
Cow position:
               
chr6:61110040-61109796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
134, 101
               

               
Conread position:
               
478-743
               

               
Cow position:
               
chr6:47246038-47245778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 23
               

               
Conread position:
               
478-744
               

               
Cow position:
               
chr6:61824667-61824410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 62
               

               
Conread position:
               
478-750
               

               
Cow position:
               
chr6:35728106-35727831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
117, 28
               

               
Conread position:
               
478-763
               

               
Cow position:
               
chr6:12338250-12337966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 99
               

               
Conread position:
               
478-764
               

               
Cow position:
               
chr6:47305597-47305314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 24
               

               
Conread position:
               
478-764
               

               
Cow position:
               
chr6:47520315-47520026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
17, 108
               

               
Conread position:
               
479-601
               

               
Cow position:
               
chr6:12711535-12711655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
479-675
               

               
Cow position:
               
chr6:55683446-55683648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
479-680
               

               
Cow position:
               
chr6:32336294-32336088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
113, 10
               

               
Conread position:
               
479-680
               

               
Cow position:
               
chr6:34076422-34076219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
479-684
               

               
Cow position:
               
chr6:47642999-47642798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
479-697
               

               
Cow position:
               
chr6:14383933-14383716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
133, 105
               

               
Conread position:
               
479-697
               

               
Cow position:
               
chr6:44728230-44728444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
479-699
               

               
Cow position:
               
chr6:24514277-24514507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
479-714
               

               
Cow position:
               
chr6:41441484-41441725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
479-722
               

               
Cow position:
               
chr6:23696248-23696017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
131, 5
               

               
Conread position:
               
479-725
               

               
Cow position:
               
chr6:48157136-48157387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
104, 15
               

               
Conread position:
               
479-729
               

               
Cow position:
               
chr6:14063031-14063301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
479-764
               

               
Cow position:
               
chr6:32122152-32121881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
479-764
               

               
Cow position:
               
chr6:59719068-59718772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
83, 197
               

               
Conread position:
               
479-768
               

               
Cow position:
               
chr6:35180997-35181288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 224
               

               
Conread position:
               
479-769
               

               
Cow position:
               
chr6:24536269-24536571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
479-769
               

               
Cow position:
               
chr6:27888600-27888321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 46
               

               
Conread position:
               
480-678
               

               
Cow position:
               
chr6:19728013-19727809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 181
               

               
Conread position:
               
480-680
               

               
Cow position:
               
chr6:66329446-66329645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
480-682
               

               
Cow position:
               
chr6:19936313-19936514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
480-689
               

               
Cow position:
               
chr6:57248773-57248564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
480-716
               

               
Cow position:
               
chr6:6060319-6060550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
132, 15
               

               
Conread position:
               
480-746
               

               
Cow position:
               
chr6:46173001-46173268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
480-764
               

               
Cow position:
               
chr6:62670129-62669844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 253
               

               
Conread position:
               
480-769
               

               
Cow position:
               
chr6:16641007-16640729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
132, 49
               

               
Conread position:
               
480-769
               

               
Cow position:
               
chr6:19264245-19264525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
130, 44
               

               
Conread position:
               
480-769
               

               
Cow position:
               
chr6:57404881-57405152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
481-679
               

               
Cow position:
               
chr6:17404816-17404619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
481-679
               

               
Cow position:
               
chr6:36570721-36570518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
481-724
               

               
Cow position:
               
chr6:132937-132689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 117
               

               
Conread position:
               
481-728
               

               
Cow position:
               
chr6:48436085-48435844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 54
               

               
Conread position:
               
481-764
               

               
Cow position:
               
chr6:35436242-35435968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
131, 86
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr6:4699962-4699768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
482-764
               

               
Cow position:
               
chr6:3330248-3329963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
132, 19
               

               
Conread position:
               
483-596
               

               
Cow position:
               
chr6:5757114-5757001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
483-764
               

               
Cow position:
               
chr6:13510427-13510150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
483-764
               

               
Cow position:
               
chr6:60819768-60819492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
131, 147
               

               
Conread position:
               
483-768
               

               
Cow position:
               
chr6:67451121-67451401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
131, 18
               

               
Conread position:
               
484-609
               

               
Cow position:
               
chr6:50840838-50840714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
484-615
               

               
Cow position:
               
chr6:59569740-59569609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
484-630
               

               
Cow position:
               
chr6:56664150-56663994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
484-637
               

               
Cow position:
               
chr6:60088223-60088376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
59, 93
               

               
Conread position:
               
484-640
               

               
Cow position:
               
chr6:56676591-56676435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
484-642
               

               
Cow position:
               
chr6:49824839-49824998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
9, 115
               

               
Conread position:
               
484-644
               

               
Cow position:
               
chr6:6117396-6117551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
128, 73
               

               
Conread position:
               
484-645
               

               
Cow position:
               
chr6:61568125-61567963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
484-661
               

               
Cow position:
               
chr6:16502790-16502969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
484-672
               

               
Cow position:
               
chr6:31846992-31847175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
127, 80
               

               
Conread position:
               
484-673
               

               
Cow position:
               
chr6:35341937-35342117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
181, 17
               

               
Conread position:
               
484-676
               

               
Cow position:
               
chr6:43906429-43906622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
484-680
               

               
Cow position:
               
chr6:58697377-58697574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
484-683
               

               
Cow position:
               
chr6:59297297-59297107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
484-685
               

               
Cow position:
               
chr6:45979931-45980134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
484-685
               

               
Cow position:
               
chr6:57167297-57167501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 109
               

               
Conread position:
               
484-686
               

               
Cow position:
               
chr6:15172807-15172617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
484-686
               

               
Cow position:
               
chr6:62805896-62805694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
484-687
               

               
Cow position:
               
chr6:63168511-63168713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 110
               

               
Conread position:
               
484-690
               

               
Cow position:
               
chr6:1173695-1173909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
484-692
               

               
Cow position:
               
chr6:10605897-10605687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
484-692
               

               
Cow position:
               
chr6:50020746-50020536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 100
               

               
Conread position:
               
484-694
               

               
Cow position:
               
chr6:26408253-26408461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
127, 11
               

               
Conread position:
               
484-697
               

               
Cow position:
               
chr6:68344982-68345191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
172, 128
               

               
Conread position:
               
484-699
               

               
Cow position:
               
chr6:57306079-57305871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
128, 47
               

               
Conread position:
               
484-704
               

               
Cow position:
               
chr6:67574640-67574422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 17
               

               
Conread position:
               
484-705
               

               
Cow position:
               
chr6:62707470-62707694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
484-709
               

               
Cow position:
               
chr6:36225361-36225138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
484-710
               

               
Cow position:
               
chr6:22253705-22253935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
484-711
               

               
Cow position:
               
chr6:24468149-24468369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
484-712
               

               
Cow position:
               
chr6:53546281-53546061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
128, 83
               

               
Conread position:
               
484-713
               

               
Cow position:
               
chr6:21183971-21184196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 91
               

               
Conread position:
               
484-714
               

               
Cow position:
               
chr6:31261255-31261018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
6, 45
               

               
Conread position:
               
484-714
               

               
Cow position:
               
chr6:46462128-46462358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
14, 116
               

               
Conread position:
               
484-714
               

               
Cow position:
               
chr6:47647981-47648212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
484-714
               

               
Cow position:
               
chr6:51666083-51666313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 185
               

               
Conread position:
               
484-715
               

               
Cow position:
               
chr6:28088794-28089025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
484-716
               

               
Cow position:
               
chr6:19045880-19045644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
484-722
               

               
Cow position:
               
chr6:12928392-12928162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
103, 85
               

               
Conread position:
               
484-725
               

               
Cow position:
               
chr6:29775870-29775635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
101, 134
               

               
Conread position:
               
484-725
               

               
Cow position:
               
chr6:48988687-48988443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
484-726
               

               
Cow position:
               
chr6:2078565-2078803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
128, 25
               

               
Conread position:
               
484-726
               

               
Cow position:
               
chr6:30501873-30502112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
484-726
               

               
Cow position:
               
chr6:36196454-36196223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
484-728
               

               
Cow position:
               
chr6:21470182-21470418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
484-728
               

               
Cow position:
               
chr6:51543153-51542902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 18
               

               
Conread position:
               
484-730
               

               
Cow position:
               
chr6:44960968-44961219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
129, 87
               

               
Conread position:
               
484-739
               

               
Cow position:
               
chr6:59660684-59660950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
6, 214
               

               
Conread position:
               
484-761
               

               
Cow position:
               
chr6:53460319-53460593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
50, 91
               

               
Conread position:
               
484-761
               

               
Cow position:
               
chr6:62437670-62437391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
484-763
               

               
Cow position:
               
chr6:14949240-14949503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
130, 25
               

               
Conread position:
               
484-763
               

               
Cow position:
               
chr6:23532898-23532631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
128, 55
               

               
Conread position:
               
484-763
               

               
Cow position:
               
chr6:58370998-58370731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
127, 11
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr6:7628221-7627938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr6:38640483-38640207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
128, 45
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr6:43134690-43134962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr6:46273881-46274153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr6:56716060-56715795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
156, 73
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr6:60143949-60144223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chr6:63066087-63065800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
101, 18
               

               
Conread position:
               
484-765
               

               
Cow position:
               
chr6:47540588-47540872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
127, 254
               

               
Conread position:
               
484-768
               

               
Cow position:
               
chr6:55545920-55546205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
127, 256
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chr6:4469018-4468739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chr6:7189879-7190148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chr6:15446946-15447232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 21
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chr6:24110537-24110251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 189
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chr6:48567107-48567376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
8, 42
               

               
Conread position:
               
484-772
               

               
Cow position:
               
chr6:17548717-17549013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
484-772
               

               
Cow position:
               
chr6:21004930-21004640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
484-772
               

               
Cow position:
               
chr6:62539356-62539627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
128, 72
               

               
Conread position:
               
484-772
               

               
Cow position:
               
chr6:67187930-67187650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 44
               

               
Conread position:
               
484-795
               

               
Cow position:
               
chr6:66590324-66590026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
485-659
               

               
Cow position:
               
chr6:21175585-21175416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
126, 90
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr6:53811835-53811643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
485-678
               

               
Cow position:
               
chr6:14190031-14189841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
485-711
               

               
Cow position:
               
chr6:17816744-17816969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 45
               

               
Conread position:
               
485-722
               

               
Cow position:
               
chr6:8161436-8161678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
485-764
               

               
Cow position:
               
chr6:12669349-12669079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 115
               

               
Conread position:
               
485-773
               

               
Cow position:
               
chr6:28148513-28148219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
486-629
               

               
Cow position:
               
chr6:65831612-65831469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
486-636
               

               
Cow position:
               
chr6:22502598-22502747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 42
               

               
Conread position:
               
486-698
               

               
Cow position:
               
chr6:53711652-53711442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
125, 16
               

               
Conread position:
               
486-754
               

               
Cow position:
               
chr6:1103495-1103751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
486-764
               

               
Cow position:
               
chr6:143130-143395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
128, 16
               

               
Conread position:
               
486-766
               

               
Cow position:
               
chr6:14913984-14914267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 63
               

               
Conread position:
               
487-580
               

               
Cow position:
               
chr6:16316856-16316763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
487-584
               

               
Cow position:
               
chr6:26929194-26929291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
487-588
               

               
Cow position:
               
chr6:16762885-16762784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
487-624
               

               
Cow position:
               
chr6:8804294-8804441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
487-643
               

               
Cow position:
               
chr6:23381417-23381574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
487-653
               

               
Cow position:
               
chr6:59597989-59597823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
99, 36
               

               
Conread position:
               
487-675
               

               
Cow position:
               
chr6:53511380-53511574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 121
               

               
Conread position:
               
487-680
               

               
Cow position:
               
chr6:49686069-49685876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 177
               

               
Conread position:
               
487-694
               

               
Cow position:
               
chr6:60778017-60777813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
125, 8
               

               
Conread position:
               
487-699
               

               
Cow position:
               
chr6:47173789-47173989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
125, 15
               

               
Conread position:
               
487-702
               

               
Cow position:
               
chr6:44706910-44706694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 20
               

               
Conread position:
               
487-702
               

               
Cow position:
               
chr6:56581805-56582025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
86, 199
               

               
Conread position:
               
487-709
               

               
Cow position:
               
chr6:51553394-51553170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 106
               

               
Conread position:
               
487-714
               

               
Cow position:
               
chr6:68628630-68628867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
92, 228
               

               
Conread position:
               
487-716
               

               
Cow position:
               
chr6:66947571-66947796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
487-721
               

               
Cow position:
               
chr6:66259986-66259747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 232
               

               
Conread position:
               
487-724
               

               
Cow position:
               
chr6:66362983-66363222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
487-754
               

               
Cow position:
               
chr6:17068406-17068663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
125, 41
               

               
Conread position:
               
487-758
               

               
Cow position:
               
chr6:40032428-40032171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 52
               

               
Conread position:
               
487-769
               

               
Cow position:
               
chr6:120484-120216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
128, 14
               

               
Conread position:
               
487-772
               

               
Cow position:
               
chr6:61514949-61515223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 67
               

               
Conread position:
               
488-696
               

               
Cow position:
               
chr6:20076045-20075835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
92, 112
               

               
Conread position:
               
488-728
               

               
Cow position:
               
chr6:37827700-37827943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
488-728
               

               
Cow position:
               
chr6:63720437-63720210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
488-764
               

               
Cow position:
               
chr6:22985614-22985882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
231, 85
               

               
Conread position:
               
489-640
               

               
Cow position:
               
chr6:59759415-59759268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 13
               

               
Conread position:
               
489-660
               

               
Cow position:
               
chr6:7291558-7291393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 75
               

               
Conread position:
               
489-661
               

               
Cow position:
               
chr6:34463343-34463511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
489-665
               

               
Cow position:
               
chr6:4760241-4760064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
489-675
               

               
Cow position:
               
chr6:62994515-62994329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
124, 105
               

               
Conread position:
               
489-677
               

               
Cow position:
               
chr6:35743227-35743039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
489-677
               

               
Cow position:
               
chr6:68272848-68272663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
489-680
               

               
Cow position:
               
chr6:53415682-53415883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
489-683
               

               
Cow position:
               
chr6:16270751-16270945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
122, 183
               

               
Conread position:
               
489-692
               

               
Cow position:
               
chr6:53758046-53758249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
124, 46
               

               
Conread position:
               
489-692
               

               
Cow position:
               
chr6:54884296-54884513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
489-696
               

               
Cow position:
               
chr6:8468906-8468707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
122, 42
               

               
Conread position:
               
489-696
               

               
Cow position:
               
chr6:66088190-66087983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
123, 146
               

               
Conread position:
               
489-697
               

               
Cow position:
               
chr6:62724805-62724596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
489-700
               

               
Cow position:
               
chr6:30825531-30825728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
122, 13
               

               
Conread position:
               
489-704
               

               
Cow position:
               
chr6:23058461-23058244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
489-711
               

               
Cow position:
               
chr6:13687569-13687785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
489-711
               

               
Cow position:
               
chr6:62079165-62078949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
123, 42
               

               
Conread position:
               
489-714
               

               
Cow position:
               
chr6:1030013-1030230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
122, 168
               

               
Conread position:
               
489-714
               

               
Cow position:
               
chr6:31778215-31777991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
122, 112
               

               
Conread position:
               
489-714
               

               
Cow position:
               
chr6:67462706-67462932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
489-717
               

               
Cow position:
               
chr6:56022305-56022536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
489-721
               

               
Cow position:
               
chr6:54127574-54127796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
124, 75
               

               
Conread position:
               
489-722
               

               
Cow position:
               
chr6:60150455-60150696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
489-723
               

               
Cow position:
               
chr6:37246192-37246425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
122, 152
               

               
Conread position:
               
489-725
               

               
Cow position:
               
chr6:323055-323292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
489-725
               

               
Cow position:
               
chr6:6229933-6229714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
123, 57
               

               
Conread position:
               
489-725
               

               
Cow position:
               
chr6:22215214-22215463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
489-726
               

               
Cow position:
               
chr6:50090892-50090654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
489-728
               

               
Cow position:
               
chr6:54831725-54831487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
125, 113
               

               
Conread position:
               
489-728
               

               
Cow position:
               
chr6:63251674-63251913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 136
               

               
Conread position:
               
489-729
               

               
Cow position:
               
chr6:54431083-54430837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 147
               

               
Conread position:
               
489-729
               

               
Cow position:
               
chr6:59620903-59620662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
122, 210
               

               
Conread position:
               
489-735
               

               
Cow position:
               
chr6:4144889-4144643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
124, 58
               

               
Conread position:
               
489-741
               

               
Cow position:
               
chr6:52658201-52657944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
122, 149
               

               
Conread position:
               
489-754
               

               
Cow position:
               
chr6:32044096-32043832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
122, 20
               

               
Conread position:
               
489-760
               

               
Cow position:
               
chr6:6194855-6195131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
122, 104
               

               
Conread position:
               
489-761
               

               
Cow position:
               
chr6:35318886-35319156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
125, 95
               

               
Conread position:
               
489-762
               

               
Cow position:
               
chr6:24339536-24339261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 114
               

               
Conread position:
               
489-762
               

               
Cow position:
               
chr6:55417286-55417549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
122, 84
               

               
Conread position:
               
489-764
               

               
Cow position:
               
chr6:15305817-15305551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
103, 17
               

               
Conread position:
               
489-764
               

               
Cow position:
               
chr6:18903790-18904077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
94, 209
               

               
Conread position:
               
489-764
               

               
Cow position:
               
chr6:53841256-53841527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 242
               

               
Conread position:
               
489-765
               

               
Cow position:
               
chr6:57089452-57089171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
489-768
               

               
Cow position:
               
chr6:6724756-6724475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
81, 174
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chr6:611788-611521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
122, 10
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chr6:1429881-1429612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
123, 84
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chr6:1769947-1770227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
108, 247
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chr6:7119384-7119649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 18
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chr6:15937605-15937880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 228
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chr6:43345193-43345472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 95
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chr6:60118390-60118121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
19, 77
               

               
Conread position:
               
489-771
               

               
Cow position:
               
chr6:12965101-12964821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
489-780
               

               
Cow position:
               
chr6:7539820-7539536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
123, 97
               

               
Conread position:
               
490-634
               

               
Cow position:
               
chr6:15256776-15256918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
490-648
               

               
Cow position:
               
chr6:66058463-66058618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
490-660
               

               
Cow position:
               
chr6:8326044-8325874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
74, 86
               

               
Conread position:
               
490-683
               

               
Cow position:
               
chr6:68246585-68246779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
490-685
               

               
Cow position:
               
chr6:53765647-53765838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
121, 133
               

               
Conread position:
               
490-686
               

               
Cow position:
               
chr6:48449061-48448876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
490-688
               

               
Cow position:
               
chr6:45159809-45160008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
490-690
               

               
Cow position:
               
chr6:33278617-33278418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
490-711
               

               
Cow position:
               
chr6:8366060-8365838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
490-714
               

               
Cow position:
               
chr6:24901909-24902132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
121, 112
               

               
Conread position:
               
490-714
               

               
Cow position:
               
chr6:47783113-47782885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
490-725
               

               
Cow position:
               
chr6:18139249-18139480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
123, 38
               

               
Conread position:
               
490-728
               

               
Cow position:
               
chr6:61576051-61575835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 37
               

               
Conread position:
               
490-755
               

               
Cow position:
               
chr6:60474381-60474115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
71, 244
               

               
Conread position:
               
490-761
               

               
Cow position:
               
chr6:15300594-15300847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 77
               

               
Conread position:
               
490-764
               

               
Cow position:
               
chr6:61631363-61631632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
105, 12
               

               
Conread position:
               
491-639
               

               
Cow position:
               
chr6:30688267-30688413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
120, 14
               

               
Conread position:
               
491-642
               

               
Cow position:
               
chr6:63233761-63233611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
491-670
               

               
Cow position:
               
chr6:16357685-16357504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
491-686
               

               
Cow position:
               
chr6:58363464-58363660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
491-691
               

               
Cow position:
               
chr6:66979114-66978916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
491-693
               

               
Cow position:
               
chr6:53346211-53346019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
119, 55
               

               
Conread position:
               
491-705
               

               
Cow position:
               
chr6:34569659-34569440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
71, 10
               

               
Conread position:
               
491-711
               

               
Cow position:
               
chr6:36643242-36643465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
491-711
               

               
Cow position:
               
chr6:50883436-50883651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
119, 10
               

               
Conread position:
               
491-726
               

               
Cow position:
               
chr6:61114010-61113776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
120, 59
               

               
Conread position:
               
491-741
               

               
Cow position:
               
chr6:39358098-39358348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
121, 76
               

               
Conread position:
               
491-749
               

               
Cow position:
               
chr6:53024566-53024815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
121, 83
               

               
Conread position:
               
491-754
               

               
Cow position:
               
chr6:20219534-20219793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 37
               

               
Conread position:
               
491-759
               

               
Cow position:
               
chr6:42567741-42567472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 15
               

               
Conread position:
               
491-762
               

               
Cow position:
               
chr6:48803395-48803658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 82
               

               
Conread position:
               
491-764
               

               
Cow position:
               
chr6:10399663-10399928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
83, 135
               

               
Conread position:
               
491-764
               

               
Cow position:
               
chr6:18144446-18144167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
491-764
               

               
Cow position:
               
chr6:25614844-25615128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 93
               

               
Conread position:
               
491-764
               

               
Cow position:
               
chr6:38441425-38441152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
73, 202
               

               
Conread position:
               
491-764
               

               
Cow position:
               
chr6:60850135-60850409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
135, 49
               

               
Conread position:
               
491-764
               

               
Cow position:
               
chr6:67282127-67281873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
491-765
               

               
Cow position:
               
chr6:47884800-47885047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
121, 69
               

               
Conread position:
               
491-767
               

               
Cow position:
               
chr6:13367527-13367256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 83
               

               
Conread position:
               
491-769
               

               
Cow position:
               
chr6:22332151-22332421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
110, 11
               

               
Conread position:
               
491-772
               

               
Cow position:
               
chr6:16765153-16765428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
97, 112
               

               
Conread position:
               
492-610
               

               
Cow position:
               
chr6:16738859-16738741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
492-645
               

               
Cow position:
               
chr6:54828076-54828230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
492-656
               

               
Cow position:
               
chr6:29496236-29496074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
119, 36
               

               
Conread position:
               
492-677
               

               
Cow position:
               
chr6:63020586-63020403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
124, 104
               

               
Conread position:
               
492-679
               

               
Cow position:
               
chr6:34224318-34224137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
492-680
               

               
Cow position:
               
chr6:28561924-28562111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
492-684
               

               
Cow position:
               
chr6:62987460-62987642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
119, 17
               

               
Conread position:
               
492-685
               

               
Cow position:
               
chr6:60186412-60186610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
492-697
               

               
Cow position:
               
chr6:57072667-57072463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
492-722
               

               
Cow position:
               
chr6:8966332-8966114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
120, 73
               

               
Conread position:
               
492-722
               

               
Cow position:
               
chr6:30024119-30023901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
118, 9
               

               
Conread position:
               
492-724
               

               
Cow position:
               
chr6:55689272-55689039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
492-725
               

               
Cow position:
               
chr6:26450543-26450327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 28
               

               
Conread position:
               
492-725
               

               
Cow position:
               
chr6:49421552-49421775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
120, 38
               

               
Conread position:
               
492-728
               

               
Cow position:
               
chr6:55405158-55404916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
492-735
               

               
Cow position:
               
chr6:14166448-14166710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
492-761
               

               
Cow position:
               
chr6:44078759-44078496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
119, 89
               

               
Conread position:
               
492-764
               

               
Cow position:
               
chr6:581496-581768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
119, 106
               

               
Conread position:
               
492-764
               

               
Cow position:
               
chr6:59798893-59798630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
492-769
               

               
Cow position:
               
chr6:8094043-8094320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
492-769
               

               
Cow position:
               
chr6:36470334-36470595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
224, 47
               

               
Conread position:
               
492-769
               

               
Cow position:
               
chr6:41655811-41656073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
123, 65
               

               
Conread position:
               
492-769
               

               
Cow position:
               
chr6:54490502-54490764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
120, 82
               

               
Conread position:
               
493-672
               

               
Cow position:
               
chr6:48278651-48278823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
493-725
               

               
Cow position:
               
chr6:63426905-63426679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
493-764
               

               
Cow position:
               
chr6:15243083-15242808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
493-764
               

               
Cow position:
               
chr6:21869387-21869675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 8
               

               
Conread position:
               
493-768
               

               
Cow position:
               
chr6:37467294-37467571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
115, 252
               

               
Conread position:
               
494-643
               

               
Cow position:
               
chr6:67374435-67374582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
118, 68
               

               
Conread position:
               
494-656
               

               
Cow position:
               
chr6:4048909-4049071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
117, 12
               

               
Conread position:
               
494-675
               

               
Cow position:
               
chr6:43607000-43607191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
494-677
               

               
Cow position:
               
chr6:34423218-34423398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
116, 85
               

               
Conread position:
               
494-711
               

               
Cow position:
               
chr6:7102997-7103214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
117, 85
               

               
Conread position:
               
494-711
               

               
Cow position:
               
chr6:66839435-66839225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
118, 86
               

               
Conread position:
               
494-714
               

               
Cow position:
               
chr6:10331856-10332077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
494-722
               

               
Cow position:
               
chr6:2607850-2607620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
494-727
               

               
Cow position:
               
chr6:22204782-22205016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
494-728
               

               
Cow position:
               
chr6:28155931-28156149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
494-729
               

               
Cow position:
               
chr6:6227250-6227011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
117, 34
               

               
Conread position:
               
494-761
               

               
Cow position:
               
chr6:21235289-21235020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
494-764
               

               
Cow position:
               
chr6:57545987-57546244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
118, 34
               

               
Conread position:
               
495-619
               

               
Cow position:
               
chr6:60674072-60673953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 84
               

               
Conread position:
               
495-645
               

               
Cow position:
               
chr6:50444874-50445025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
495-680
               

               
Cow position:
               
chr6:12631734-12631559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
116, 39
               

               
Conread position:
               
495-680
               

               
Cow position:
               
chr6:50682058-50682240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
116, 149
               

               
Conread position:
               
495-684
               

               
Cow position:
               
chr6:57467840-57467650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
495-689
               

               
Cow position:
               
chr6:17173070-17172873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 144
               

               
Conread position:
               
495-692
               

               
Cow position:
               
chr6:10324647-10324845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
495-693
               

               
Cow position:
               
chr6:6996658-6996853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
495-713
               

               
Cow position:
               
chr6:51933780-51933579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
495-716
               

               
Cow position:
               
chr6:16287826-16288036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
117, 39
               

               
Conread position:
               
495-737
               

               
Cow position:
               
chr6:43787667-43787912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
495-750
               

               
Cow position:
               
chr6:21535281-21535028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 86
               

               
Conread position:
               
495-763
               

               
Cow position:
               
chr6:47356067-47355796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
66, 56
               

               
Conread position:
               
495-764
               

               
Cow position:
               
chr6:8600246-8599981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
495-764
               

               
Cow position:
               
chr6:16102950-16103220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
11, 172
               

               
Conread position:
               
495-764
               

               
Cow position:
               
chr6:18117808-18118076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
495-764
               

               
Cow position:
               
chr6:21061650-21061911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
116, 62
               

               
Conread position:
               
495-764
               

               
Cow position:
               
chr6:32126293-32126038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
116, 69
               

               
Conread position:
               
495-764
               

               
Cow position:
               
chr6:35989997-35990259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
495-764
               

               
Cow position:
               
chr6:38771513-38771262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
495-764
               

               
Cow position:
               
chr6:56850258-56849988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
116, 86
               

               
Conread position:
               
495-769
               

               
Cow position:
               
chr6:32268645-32268905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
7, 90
               

               
Conread position:
               
495-769
               

               
Cow position:
               
chr6:37149423-37149159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
495-769
               

               
Cow position:
               
chr6:65871271-65871001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
117, 9
               

               
Conread position:
               
495-769
               

               
Cow position:
               
chr6:66434195-66433913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 167
               

               
Conread position:
               
496-613
               

               
Cow position:
               
chr6:41147459-41147344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 26
               

               
Conread position:
               
496-645
               

               
Cow position:
               
chr6:47989666-47989518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
496-668
               

               
Cow position:
               
chr6:57935336-57935504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
115, 35
               

               
Conread position:
               
496-677
               

               
Cow position:
               
chr6:55919692-55919874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 98
               

               
Conread position:
               
496-721
               

               
Cow position:
               
chr6:55296852-55297078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
496-722
               

               
Cow position:
               
chr6:65702169-65702397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
496-725
               

               
Cow position:
               
chr6:19225152-19225361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
115, 32
               

               
Conread position:
               
496-729
               

               
Cow position:
               
chr6:58304652-58304419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 38
               

               
Conread position:
               
496-730
               

               
Cow position:
               
chr6:8369664-8369434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 164
               

               
Conread position:
               
496-769
               

               
Cow position:
               
chr6:10039966-10039693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 247
               

               
Conread position:
               
496-769
               

               
Cow position:
               
chr6:28972793-28973064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
97, 107
               

               
Conread position:
               
497-659
               

               
Cow position:
               
chr6:13097159-13097322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
85, 98
               

               
Conread position:
               
497-680
               

               
Cow position:
               
chr6:36939113-36938925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
497-760
               

               
Cow position:
               
chr6:44194317-44194567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
498-711
               

               
Cow position:
               
chr6:31806687-31806901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
498-721
               

               
Cow position:
               
chr6:45094816-45094583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
68, 197
               

               
Conread position:
               
498-759
               

               
Cow position:
               
chr6:5302164-5302435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
68, 178
               

               
Conread position:
               
499-602
               

               
Cow position:
               
chr6:23235422-23235322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
499-661
               

               
Cow position:
               
chr6:8726914-8726754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
111, 84
               

               
Conread position:
               
499-673
               

               
Cow position:
               
chr6:21350794-21350968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
499-716
               

               
Cow position:
               
chr6:65903389-65903602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
113, 59
               

               
Conread position:
               
499-725
               

               
Cow position:
               
chr6:38853419-38853646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
499-764
               

               
Cow position:
               
chr6:19754842-19755100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
112, 8
               

               
Conread position:
               
499-768
               

               
Cow position:
               
chr6:41376008-41375742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 84
               

               
Conread position:
               
500-769
               

               
Cow position:
               
chr6:66131555-66131277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
85, 184
               

               
Conread position:
               
501-650
               

               
Cow position:
               
chr6:26764587-26764740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
501-650
               

               
Cow position:
               
chr6:55945721-55945876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
501-658
               

               
Cow position:
               
chr6:45471351-45471510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
501-659
               

               
Cow position:
               
chr6:38033093-38032936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
111, 82
               

               
Conread position:
               
501-679
               

               
Cow position:
               
chr6:24903340-24903520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
501-684
               

               
Cow position:
               
chr6:57300005-57299811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
501-688
               

               
Cow position:
               
chr6:34721876-34722055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
501-689
               

               
Cow position:
               
chr6:54821069-54820880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
501-695
               

               
Cow position:
               
chr6:5445903-5445709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
113, 91
               

               
Conread position:
               
501-695
               

               
Cow position:
               
chr6:13742222-13742031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
110, 89
               

               
Conread position:
               
501-695
               

               
Cow position:
               
chr6:46206526-46206340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
92, 27
               

               
Conread position:
               
501-696
               

               
Cow position:
               
chr6:67633325-67633518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
110, 136
               

               
Conread position:
               
501-700
               

               
Cow position:
               
chr6:21083306-21083503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 67
               

               
Conread position:
               
501-700
               

               
Cow position:
               
chr6:36537128-36537323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
109, 73
               

               
Conread position:
               
501-701
               

               
Cow position:
               
chr6:5461526-5461739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
501-705
               

               
Cow position:
               
chr6:25772984-25773183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
501-706
               

               
Cow position:
               
chr6:34475323-34475529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
69, 93
               

               
Conread position:
               
501-706
               

               
Cow position:
               
chr6:69374599-69374801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
110, 122
               

               
Conread position:
               
501-711
               

               
Cow position:
               
chr6:58725602-58725397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
111, 82
               

               
Conread position:
               
501-716
               

               
Cow position:
               
chr6:33150059-33150270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
110, 24
               

               
Conread position:
               
501-717
               

               
Cow position:
               
chr6:50771126-50771338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 19
               

               
Conread position:
               
501-722
               

               
Cow position:
               
chr6:9302488-9302701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 45
               

               
Conread position:
               
501-725
               

               
Cow position:
               
chr6:57079661-57079436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
501-727
               

               
Cow position:
               
chr6:19402080-19401854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
113, 71
               

               
Conread position:
               
501-737
               

               
Cow position:
               
chr6:56799656-56799898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 92
               

               
Conread position:
               
501-754
               

               
Cow position:
               
chr6:5609207-5609460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 94
               

               
Conread position:
               
501-762
               

               
Cow position:
               
chr6:19996850-19996595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
501-762
               

               
Cow position:
               
chr6:38610209-38609947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
105, 78
               

               
Conread position:
               
501-764
               

               
Cow position:
               
chr6:693910-694175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
111, 80
               

               
Conread position:
               
501-764
               

               
Cow position:
               
chr6:4559068-4559328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 116
               

               
Conread position:
               
501-764
               

               
Cow position:
               
chr6:29240167-29239916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
108, 68
               

               
Conread position:
               
501-764
               

               
Cow position:
               
chr6:41014739-41015001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 231
               

               
Conread position:
               
501-764
               

               
Cow position:
               
chr6:56394008-56393748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
110, 56
               

               
Conread position:
               
501-765
               

               
Cow position:
               
chr6:50504691-50504428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
61, 79
               

               
Conread position:
               
502-609
               

               
Cow position:
               
chr6:36267234-36267126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
502-644
               

               
Cow position:
               
chr6:21346919-21347057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 79
               

               
Conread position:
               
502-673
               

               
Cow position:
               
chr6:29265886-29266068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
502-675
               

               
Cow position:
               
chr6:68302246-68302420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
502-680
               

               
Cow position:
               
chr6:32006222-32006397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
110, 71
               

               
Conread position:
               
502-687
               

               
Cow position:
               
chr6:50452080-50451893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 159
               

               
Conread position:
               
502-688
               

               
Cow position:
               
chr6:26054666-26054855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
502-695
               

               
Cow position:
               
chr6:19563245-19563441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 153
               

               
Conread position:
               
502-711
               

               
Cow position:
               
chr6:32866987-32867191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
108, 49
               

               
Conread position:
               
502-762
               

               
Cow position:
               
chr6:44867312-44867562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 44
               

               
Conread position:
               
502-764
               

               
Cow position:
               
chr6:46865351-46865613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
502-764
               

               
Cow position:
               
chr6:47575125-47574882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
110, 52
               

               
Conread position:
               
502-766
               

               
Cow position:
               
chr6:61883939-61884186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 95
               

               
Conread position:
               
502-769
               

               
Cow position:
               
chr6:34195928-34196179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 66
               

               
Conread position:
               
503-728
               

               
Cow position:
               
chr6:45690386-45690599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
111, 8
               

               
Conread position:
               
503-729
               

               
Cow position:
               
chr6:41169300-41169527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
503-742
               

               
Cow position:
               
chr6:35539264-35539509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 101
               

               
Conread position:
               
506-665
               

               
Cow position:
               
chr6:52454215-52454375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
506-668
               

               
Cow position:
               
chr6:63182515-63182358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 70
               

               
Conread position:
               
506-685
               

               
Cow position:
               
chr6:46160973-46161154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
506-691
               

               
Cow position:
               
chr6:52069712-52069527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 135
               

               
Conread position:
               
506-692
               

               
Cow position:
               
chr6:1074669-1074482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
506-710
               

               
Cow position:
               
chr6:31814516-31814721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
506-711
               

               
Cow position:
               
chr6:29485313-29485109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
80, 59
               

               
Conread position:
               
506-714
               

               
Cow position:
               
chr6:22157983-22158191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
506-716
               

               
Cow position:
               
chr6:9832427-9832228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
506-723
               

               
Cow position:
               
chr6:68816401-68816179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
506-728
               

               
Cow position:
               
chr6:48379381-48379608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
506-747
               

               
Cow position:
               
chr6:39093975-39093740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
186, 54
               

               
Conread position:
               
506-764
               

               
Cow position:
               
chr6:1941604-1941862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
104, 67
               

               
Conread position:
               
506-769
               

               
Cow position:
               
chr6:46466048-46465794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
106, 61
               

               
Conread position:
               
506-769
               

               
Cow position:
               
chr6:58732070-58732335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 166
               

               
Conread position:
               
507-658
               

               
Cow position:
               
chr6:47450690-47450842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
507-728
               

               
Cow position:
               
chr6:23109962-23110190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
507-769
               

               
Cow position:
               
chr6:12091757-12092022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
68, 235
               

               
Conread position:
               
508-686
               

               
Cow position:
               
chr6:48793008-48792829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
79, 92
               

               
Conread position:
               
508-687
               

               
Cow position:
               
chr6:61644628-61644808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
508-692
               

               
Cow position:
               
chr6:47022787-47022606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
103, 75
               

               
Conread position:
               
508-697
               

               
Cow position:
               
chr6:34380588-34380774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
508-706
               

               
Cow position:
               
chr6:54647271-54647472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
508-714
               

               
Cow position:
               
chr6:62811779-62811574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
508-731
               

               
Cow position:
               
chr6:61557060-61556832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
508-758
               

               
Cow position:
               
chr6:10189990-10189760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
508-764
               

               
Cow position:
               
chr6:41733863-41733603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
103, 226
               

               
Conread position:
               
508-769
               

               
Cow position:
               
chr6:51835626-51835369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 51
               

               
Conread position:
               
509-657
               

               
Cow position:
               
chr6:54406576-54406719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
103, 15
               

               
Conread position:
               
509-661
               

               
Cow position:
               
chr6:2758009-2757861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
103, 60
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr6:63012557-63012389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
105, 96
               

               
Conread position:
               
509-686
               

               
Cow position:
               
chr6:42136884-42137065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
53, 106
               

               
Conread position:
               
509-695
               

               
Cow position:
               
chr6:16262008-16261821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
509-697
               

               
Cow position:
               
chr6:14471592-14471404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
101, 172
               

               
Conread position:
               
509-711
               

               
Cow position:
               
chr6:67538102-67538303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 91
               

               
Conread position:
               
509-714
               

               
Cow position:
               
chr6:60121369-60121576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
509-722
               

               
Cow position:
               
chr6:51120839-51121059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
105, 117
               

               
Conread position:
               
509-749
               

               
Cow position:
               
chr6:60517065-60516817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
62, 158
               

               
Conread position:
               
509-753
               

               
Cow position:
               
chr6:27219393-27219165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
102, 62
               

               
Conread position:
               
509-764
               

               
Cow position:
               
chr6:10105756-10106005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
509-764
               

               
Cow position:
               
chr6:22525552-22525308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
509-764
               

               
Cow position:
               
chr6:38207259-38207515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
509-764
               

               
Cow position:
               
chr6:67617720-67617975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
102, 44
               

               
Conread position:
               
509-764
               

               
Cow position:
               
chr6:67951184-67950928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
509-769
               

               
Cow position:
               
chr6:56986421-56986674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 162
               

               
Conread position:
               
509-779
               

               
Cow position:
               
chr6:17794528-17794799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
35, 225
               

               
Conread position:
               
510-608
               

               
Cow position:
               
chr6:11894778-11894876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
510-696
               

               
Cow position:
               
chr6:54492077-54492266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
510-709
               

               
Cow position:
               
chr6:22945432-22945233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 58
               

               
Conread position:
               
510-748
               

               
Cow position:
               
chr6:48469233-48468991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
69, 15
               

               
Conread position:
               
510-764
               

               
Cow position:
               
chr6:5113821-5114071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 92
               

               
Conread position:
               
510-764
               

               
Cow position:
               
chr6:45388547-45388306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
510-767
               

               
Cow position:
               
chr6:2585167-2584914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 68
               

               
Conread position:
               
510-769
               

               
Cow position:
               
chr6:46859944-46860197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
100, 56
               

               
Conread position:
               
511-650
               

               
Cow position:
               
chr6:57143469-57143608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
100, 136
               

               
Conread position:
               
511-722
               

               
Cow position:
               
chr6:65534943-65535155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
511-729
               

               
Cow position:
               
chr6:4383699-4383489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
511-769
               

               
Cow position:
               
chr6:12912265-12912009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 123
               

               
Conread position:
               
511-769
               

               
Cow position:
               
chr6:12914697-12914441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 123
               

               
Conread position:
               
511-771
               

               
Cow position:
               
chr6:61681303-61681041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 79
               

               
Conread position:
               
513-685
               

               
Cow position:
               
chr6:18599027-18599199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 26
               

               
Conread position:
               
513-690
               

               
Cow position:
               
chr6:39356337-39356159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
513-699
               

               
Cow position:
               
chr6:15058598-15058415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 49
               

               
Conread position:
               
513-737
               

               
Cow position:
               
chr6:33450754-33450971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
210, 55
               

               
Conread position:
               
513-764
               

               
Cow position:
               
chr6:61523981-61524231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
513-776
               

               
Cow position:
               
chr6:19696032-19695775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 159
               

               
Conread position:
               
514-707
               

               
Cow position:
               
chr6:57295954-57295760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
514-707
               

               
Cow position:
               
chr6:59546287-59546092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
514-709
               

               
Cow position:
               
chr6:39415047-39414848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
97, 56
               

               
Conread position:
               
514-723
               

               
Cow position:
               
chr6:1870975-1871182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
514-764
               

               
Cow position:
               
chr6:57287449-57287684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
514-769
               

               
Cow position:
               
chr6:60740232-60739987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
515-680
               

               
Cow position:
               
chr6:54439781-54439947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
515-724
               

               
Cow position:
               
chr6:28483238-28483029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
97, 69
               

               
Conread position:
               
516-717
               

               
Cow position:
               
chr6:397700-397491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
516-764
               

               
Cow position:
               
chr6:9718697-9718944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
98, 45
               

               
Conread position:
               
516-769
               

               
Cow position:
               
chr6:4691745-4692008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 114
               

               
Conread position:
               
517-674
               

               
Cow position:
               
chr6:33290191-33290032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
517-676
               

               
Cow position:
               
chr6:24651761-24651919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
97, 21
               

               
Conread position:
               
517-769
               

               
Cow position:
               
chr6:35842879-35842626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
95, 85
               

               
Conread position:
               
517-769
               

               
Cow position:
               
chr6:52413081-52412832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
94, 171
               

               
Conread position:
               
519-762
               

               
Cow position:
               
chr6:21736685-21736910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
128, 47
               

               
Conread position:
               
519-772
               

               
Cow position:
               
chr6:445545-445289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
520-698
               

               
Cow position:
               
chr6:16065628-16065805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
91, 78
               

               
Conread position:
               
520-749
               

               
Cow position:
               
chr6:36920759-36920985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
199, 60
               

               
Conread position:
               
520-767
               

               
Cow position:
               
chr6:8125545-8125298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 214
               

               
Conread position:
               
520-769
               

               
Cow position:
               
chr6:38641710-38641465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
92, 74
               

               
Conread position:
               
522-764
               

               
Cow position:
               
chr6:47832898-47833146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 187
               

               
Conread position:
               
523-772
               

               
Cow position:
               
chr6:26915541-26915298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
524-692
               

               
Cow position:
               
chr6:17954035-17954198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
63, 115
               

               
Conread position:
               
525-710
               

               
Cow position:
               
chr6:67643478-67643663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 51
               

               
Conread position:
               
526-728
               

               
Cow position:
               
chr6:61168975-61168765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
526-764
               

               
Cow position:
               
chr6:27851498-27851731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 44
               

               
Conread position:
               
527-698
               

               
Cow position:
               
chr6:30895781-30895953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
84, 63
               

               
Conread position:
               
527-765
               

               
Cow position:
               
chr6:50984434-50984200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 76
               

               
Conread position:
               
527-769
               

               
Cow position:
               
chr6:40774125-40774374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
530-728
               

               
Cow position:
               
chr6:10488074-10488260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
530-729
               

               
Cow position:
               
chr6:69153618-69153422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
84, 161
               

               
Conread position:
               
531-721
               

               
Cow position:
               
chr6:31865300-31865115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
79, 133
               

               
Conread position:
               
531-744
               

               
Cow position:
               
chr6:21467060-21467275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
80, 141
               

               
Conread position:
               
532-629
               

               
Cow position:
               
chr6:31778917-31778819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
533-764
               

               
Cow position:
               
chr6:36189903-36189674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
78, 138
               

               
Conread position:
               
533-767
               

               
Cow position:
               
chr6:21514403-21514637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
534-675
               

               
Cow position:
               
chr6:55450136-55449996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
78, 46
               

               
Conread position:
               
534-711
               

               
Cow position:
               
chr6:57571680-57571506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
534-725
               

               
Cow position:
               
chr6:6067502-6067689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
534-726
               

               
Cow position:
               
chr6:67323508-67323317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
534-809
               

               
Cow position:
               
chr6:59301581-59301857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
535-764
               

               
Cow position:
               
chr6:2153395-2153622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
79, 193
               

               
Conread position:
               
536-772
               

               
Cow position:
               
chr6:17333850-17334085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
77, 208
               

               
Conread position:
               
538-762
               

               
Cow position:
               
chr6:55502971-55502743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 201
               

               
Conread position:
               
538-763
               

               
Cow position:
               
chr6:40713311-40713523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 36
               

               
Conread position:
               
541-695
               

               
Cow position:
               
chr6:58076591-58076436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
541-754
               

               
Cow position:
               
chr6:21590900-21590691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
52, 33
               

               
Conread position:
               
542-728
               

               
Cow position:
               
chr6:56308304-56308496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
546-769
               

               
Cow position:
               
chr6:59631729-59631953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
65, 188
               

               
Conread position:
               
546-769
               

               
Cow position:
               
chr6:68652162-68652382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
68, 43
               

               
Conread position:
               
550-714
               

               
Cow position:
               
chr6:47254803-47254965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 118
               

               
Conread position:
               
552-764
               

               
Cow position:
               
chr6:60350102-60350319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
556-764
               

               
Cow position:
               
chr6:67456901-67456698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
59, 172
               

               
Conread position:
               
556-769
               

               
Cow position:
               
chr6:3592580-3592370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
56, 97
               

               
Conread position:
               
557-764
               

               
Cow position:
               
chr6:24004720-24004517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
557-764
               

               
Cow position:
               
chr6:36454414-36454615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
557-764
               

               
Cow position:
               
chr6:51294467-51294259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
557-764
               

               
Cow position:
               
chr6:54990816-54991027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
559-769
               

               
Cow position:
               
chr6:19131612-19131400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
22, 165
               

               
Conread position:
               
560-661
               

               
Cow position:
               
chr6:50882760-50882658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
560-694
               

               
Cow position:
               
chr6:107247-107381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
52, 30
               

               
Conread position:
               
560-697
               

               
Cow position:
               
chr6:28900507-28900367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
560-716
               

               
Cow position:
               
chr6:21066706-21066862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 21
               

               
Conread position:
               
560-722
               

               
Cow position:
               
chr6:7568302-7568139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
560-746
               

               
Cow position:
               
chr6:37783580-37783395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 169
               

               
Conread position:
               
560-754
               

               
Cow position:
               
chr6:60451603-60451407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
52, 21
               

               
Conread position:
               
560-759
               

               
Cow position:
               
chr6:20606138-20605935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
560-762
               

               
Cow position:
               
chr6:46331101-46330897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
560-764
               

               
Cow position:
               
chr6:35993760-35993560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
560-764
               

               
Cow position:
               
chr6:55535573-55535773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 72
               

               
Conread position:
               
560-767
               

               
Cow position:
               
chr6:16764467-16764682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
51, 178
               

               
Conread position:
               
560-769
               

               
Cow position:
               
chr6:6343608-6343401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
560-769
               

               
Cow position:
               
chr6:18048845-18049053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
560-772
               

               
Cow position:
               
chr6:35896175-35896372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
561-699
               

               
Cow position:
               
chr6:37603743-37603603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
561-746
               

               
Cow position:
               
chr6:7989242-7989425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
112, 25
               

               
Conread position:
               
561-764
               

               
Cow position:
               
chr6:54864482-54864694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 102
               

               
Conread position:
               
562-747
               

               
Cow position:
               
chr6:51969251-51969069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
562-764
               

               
Cow position:
               
chr6:25407215-25407414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 166
               

               
Conread position:
               
562-769
               

               
Cow position:
               
chr6:30974211-30974018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
563-744
               

               
Cow position:
               
chr6:61128781-61128963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
563-764
               

               
Cow position:
               
chr6:51086238-51086046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
564-680
               

               
Cow position:
               
chr6:38234407-38234290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
564-690
               

               
Cow position:
               
chr6:35654377-35654502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
564-693
               

               
Cow position:
               
chr6:16738534-16738405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
564-695
               

               
Cow position:
               
chr6:62478695-62478827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
564-721
               

               
Cow position:
               
chr6:27110773-27110616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
564-735
               

               
Cow position:
               
chr6:49096279-49096449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 107
               

               
Conread position:
               
564-763
               

               
Cow position:
               
chr6:47799468-47799269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
48, 164
               

               
Conread position:
               
564-764
               

               
Cow position:
               
chr6:16191844-16191650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
564-764
               

               
Cow position:
               
chr6:37199365-37199554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
167, 16
               

               
Conread position:
               
564-769
               

               
Cow position:
               
chr6:47339181-47339386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
48, 164
               

               
Conread position:
               
564-769
               

               
Cow position:
               
chr6:66531647-66531850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
565-659
               

               
Cow position:
               
chr6:47638561-47638467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
565-769
               

               
Cow position:
               
chr6:54867691-54867485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
566-674
               

               
Cow position:
               
chr6:38961635-38961744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
566-696
               

               
Cow position:
               
chr6:19508015-19508146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
566-698
               

               
Cow position:
               
chr6:19519546-19519415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
566-712
               

               
Cow position:
               
chr6:5400587-5400734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
566-712
               

               
Cow position:
               
chr6:52044769-52044913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
567-751
               

               
Cow position:
               
chr6:51463464-51463647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
568-722
               

               
Cow position:
               
chr6:23611108-23610958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
569-714
               

               
Cow position:
               
chr6:4105653-4105508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
569-747
               

               
Cow position:
               
chr6:10224361-10224194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
43, 89
               

               
Conread position:
               
569-764
               

               
Cow position:
               
chr6:59069450-59069650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
569-769
               

               
Cow position:
               
chr6:36652593-36652390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
569-772
               

               
Cow position:
               
chr6:61142391-61142596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 155
               

               
Conread position:
               
570-711
               

               
Cow position:
               
chr6:16316485-16316340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
570-772
               

               
Cow position:
               
chr6:582104-582304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
38, 94
               

               
Conread position:
               
574-764
               

               
Cow position:
               
chr6:55161635-55161442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
574-772
               

               
Cow position:
               
chr6:528118-528312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 155
               

               
Conread position:
               
575-762
               

               
Cow position:
               
chr6:63298868-63299054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
575-763
               

               
Cow position:
               
chr6:16352190-16352370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 134
               

               
Conread position:
               
575-764
               

               
Cow position:
               
chr6:35103164-35103357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 121
               

               
Conread position:
               
576-693
               

               
Cow position:
               
chr6:5957588-5957703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
576-748
               

               
Cow position:
               
chr6:67805852-67806027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
577-724
               

               
Cow position:
               
chr6:58608282-58608431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
578-771
               

               
Cow position:
               
chr6:19259179-19259376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
579-706
               

               
Cow position:
               
chr6:46841366-46841494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
579-781
               

               
Cow position:
               
chr6:37463183-37462977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
581-764
               

               
Cow position:
               
chr6:11169861-11169674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 97
               

               
Conread position:
               
581-764
               

               
Cow position:
               
chr6:60442565-60442395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
33, 50
               

               
Conread position:
               
582-729
               

               
Cow position:
               
chr6:54573417-54573267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
583-721
               

               
Cow position:
               
chr6:63047748-63047609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
583-757
               

               
Cow position:
               
chr6:19681369-19681545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
583-769
               

               
Cow position:
               
chr6:28976884-28977073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
583-769
               

               
Cow position:
               
chr6:42565843-42565660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
583-769
               

               
Cow position:
               
chr6:52901394-52901205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
584-761
               

               
Cow position:
               
chr6:58597350-58597530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
584-764
               

               
Cow position:
               
chr6:38218821-38218645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 89
               

               
Conread position:
               
586-716
               

               
Cow position:
               
chr6:16707165-16707037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
586-716
               

               
Cow position:
               
chr6:54607003-54606875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 7
               

               
Conread position:
               
586-764
               

               
Cow position:
               
chr6:10487739-10487563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
586-764
               

               
Cow position:
               
chr6:33929393-33929574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
586-769
               

               
Cow position:
               
chr6:19013216-19013038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
588-745
               

               
Cow position:
               
chr6:36012053-36011901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
589-754
               

               
Cow position:
               
chr6:13053947-13053780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 128
               

               
Conread position:
               
592-701
               

               
Cow position:
               
chr6:18968500-18968607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
592-722
               

               
Cow position:
               
chr6:314980-314852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
592-758
               

               
Cow position:
               
chr6:20196156-20196315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
592-769
               

               
Cow position:
               
chr6:57164572-57164398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
150, 23
               

               
Conread position:
               
592-769
               

               
Cow position:
               
chr6:60667557-60667391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
594-707
               

               
Cow position:
               
chr6:60516769-60516656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
595-762
               

               
Cow position:
               
chr6:17527221-17527384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
595-764
               

               
Cow position:
               
chr6:31526190-31526019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
595-769
               

               
Cow position:
               
chr6:4864403-4864577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
595-769
               

               
Cow position:
               
chr6:17527445-17527617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
595-772
               

               
Cow position:
               
chr6:66874493-66874318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
596-717
               

               
Cow position:
               
chr6:44540691-44540569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
16, 37
               

               
Conread position:
               
596-764
               

               
Cow position:
               
chr6:8787894-8788061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
16, 156
               

               
Conread position:
               
597-727
               

               
Cow position:
               
chr6:66375191-66375322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
600-764
               

               
Cow position:
               
chr6:12845514-12845361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
600-766
               

               
Cow position:
               
chr6:63272473-63272638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
600-769
               

               
Cow position:
               
chr6:44623748-44623578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
605-769
               

               
Cow position:
               
chr6:45064885-45065045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
606-769
               

               
Cow position:
               
chr6:28318529-28318375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
612-764
               

               
Cow position:
               
chr6:38614938-38614792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
119, 51
               

               
Conread position:
               
613-769
               

               
Cow position:
               
chr6:12542805-12542962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
620-766
               

               
Cow position:
               
chr6:457293-457153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 45
               

               
Conread position:
               
624-764
               

               
Cow position:
               
chr6:54140911-54140772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 107
               

               
Conread position:
               
625-764
               

               
Cow position:
               
chr6:22502798-22502933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
639-769
               

               
Cow position:
               
chr6:54364893-54365032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
654-769
               

               
Cow position:
               
chr6:14850630-14850743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               
Show alignments to all cow chromosomes.