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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8041I01.3
        

               
Conread position:
               
400-712
               

               
Cow position:
               
chrX:38302135-38301822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
406-769
               

               
Cow position:
               
chrX:35590441-35590799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
408-769
               

               
Cow position:
               
chrX:33800641-33800281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
105, 46
               

               
Conread position:
               
416-769
               

               
Cow position:
               
chrX:869870-870217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
25, 54
               

               
Conread position:
               
431-729
               

               
Cow position:
               
chrX:1087858-1088144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
181, 33
               

               
Conread position:
               
435-610
               

               
Cow position:
               
chrX:16927176-16927349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
435-695
               

               
Cow position:
               
chrX:4092209-4091954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 53
               

               
Conread position:
               
439-679
               

               
Cow position:
               
chrX:10414968-10415207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
445-764
               

               
Cow position:
               
chrX:36367653-36367979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 294
               

               
Conread position:
               
447-609
               

               
Cow position:
               
chrX:37976728-37976566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
447-685
               

               
Cow position:
               
chrX:45759946-45759711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
447-716
               

               
Cow position:
               
chrX:47991869-47991602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
138, 23
               

               
Conread position:
               
447-762
               

               
Cow position:
               
chrX:5872613-5872284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 302
               

               
Conread position:
               
448-714
               

               
Cow position:
               
chrX:48118178-48118441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
163, 40
               

               
Conread position:
               
449-725
               

               
Cow position:
               
chrX:5679653-5679920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
450-769
               

               
Cow position:
               
chrX:15146924-15147229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
450-769
               

               
Cow position:
               
chrX:17232010-17231691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 33
               

               
Conread position:
               
451-690
               

               
Cow position:
               
chrX:27270643-27270410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
45, 32
               

               
Conread position:
               
451-716
               

               
Cow position:
               
chrX:7179159-7178906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
5, 82
               

               
Conread position:
               
454-764
               

               
Cow position:
               
chrX:27393746-27394059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
454-769
               

               
Cow position:
               
chrX:8917668-8917355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
455-589
               

               
Cow position:
               
chrX:34505838-34505969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
455-769
               

               
Cow position:
               
chrX:27945779-27946098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
458-728
               

               
Cow position:
               
chrX:47013133-47013410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
459-728
               

               
Cow position:
               
chrX:2936214-2935954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
153, 26
               

               
Conread position:
               
462-714
               

               
Cow position:
               
chrX:26979526-26979778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 72
               

               
Conread position:
               
464-740
               

               
Cow position:
               
chrX:40320668-40320391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 44
               

               
Conread position:
               
464-764
               

               
Cow position:
               
chrX:42894178-42893880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 10
               

               
Conread position:
               
465-670
               

               
Cow position:
               
chrX:42087082-42086883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
145, 18
               

               
Conread position:
               
465-680
               

               
Cow position:
               
chrX:44225470-44225686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
465-685
               

               
Cow position:
               
chrX:35410010-35409792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 7
               

               
Conread position:
               
465-693
               

               
Cow position:
               
chrX:14925539-14925308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 203
               

               
Conread position:
               
465-730
               

               
Cow position:
               
chrX:10859053-10859319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
146, 104
               

               
Conread position:
               
465-749
               

               
Cow position:
               
chrX:4289699-4289417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
10, 107
               

               
Conread position:
               
465-762
               

               
Cow position:
               
chrX:47657651-47657349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 28
               

               
Conread position:
               
465-763
               

               
Cow position:
               
chrX:1499915-1499629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
465-769
               

               
Cow position:
               
chrX:35885474-35885769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 9
               

               
Conread position:
               
466-680
               

               
Cow position:
               
chrX:36468108-36468323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
466-708
               

               
Cow position:
               
chrX:47855236-47854998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
146, 103
               

               
Conread position:
               
466-714
               

               
Cow position:
               
chrX:1719361-1719126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
148, 18
               

               
Conread position:
               
466-725
               

               
Cow position:
               
chrX:42432260-42432515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
144, 39
               

               
Conread position:
               
466-763
               

               
Cow position:
               
chrX:28940501-28940210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
146, 35
               

               
Conread position:
               
466-765
               

               
Cow position:
               
chrX:5063494-5063214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
466-769
               

               
Cow position:
               
chrX:7351558-7351259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
466-769
               

               
Cow position:
               
chrX:7722234-7721947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
466-769
               

               
Cow position:
               
chrX:34540941-34540637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
105, 23
               

               
Conread position:
               
467-610
               

               
Cow position:
               
chrX:42220445-42220586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
467-632
               

               
Cow position:
               
chrX:15533954-15534119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
467-661
               

               
Cow position:
               
chrX:25347317-25347122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
467-675
               

               
Cow position:
               
chrX:13001-12800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
467-682
               

               
Cow position:
               
chrX:19000386-19000169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
467-695
               

               
Cow position:
               
chrX:32019875-32020104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
467-714
               

               
Cow position:
               
chrX:45139674-45139921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
467-716
               

               
Cow position:
               
chrX:35285429-35285182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 17
               

               
Conread position:
               
467-753
               

               
Cow position:
               
chrX:45413356-45413654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 35
               

               
Conread position:
               
467-761
               

               
Cow position:
               
chrX:3650433-3650148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
145, 83
               

               
Conread position:
               
467-762
               

               
Cow position:
               
chrX:17956945-17956660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 28
               

               
Conread position:
               
467-764
               

               
Cow position:
               
chrX:44055064-44054770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 263
               

               
Conread position:
               
468-666
               

               
Cow position:
               
chrX:3032786-3032984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
61, 33
               

               
Conread position:
               
468-679
               

               
Cow position:
               
chrX:6389336-6389127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
144, 105
               

               
Conread position:
               
468-680
               

               
Cow position:
               
chrX:41453554-41453347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
146, 33
               

               
Conread position:
               
468-689
               

               
Cow position:
               
chrX:3606138-3605916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
468-724
               

               
Cow position:
               
chrX:4268814-4269064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 8
               

               
Conread position:
               
468-771
               

               
Cow position:
               
chrX:43151894-43152199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
469-639
               

               
Cow position:
               
chrX:19510852-19511031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
469-660
               

               
Cow position:
               
chrX:14135933-14135743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
14, 102
               

               
Conread position:
               
469-680
               

               
Cow position:
               
chrX:5097539-5097754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
110, 33
               

               
Conread position:
               
469-680
               

               
Cow position:
               
chrX:42875463-42875257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
140, 30
               

               
Conread position:
               
469-692
               

               
Cow position:
               
chrX:36424023-36424245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
142, 14
               

               
Conread position:
               
469-714
               

               
Cow position:
               
chrX:48194635-48194880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
142, 134
               

               
Conread position:
               
469-722
               

               
Cow position:
               
chrX:26843005-26843266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
469-728
               

               
Cow position:
               
chrX:3806934-3806679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 41
               

               
Conread position:
               
469-764
               

               
Cow position:
               
chrX:29724008-29723705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
5, 39
               

               
Conread position:
               
470-689
               

               
Cow position:
               
chrX:29451290-29451514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
114, 220
               

               
Conread position:
               
470-695
               

               
Cow position:
               
chrX:30958984-30958756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
470-708
               

               
Cow position:
               
chrX:21861190-21861424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
470-727
               

               
Cow position:
               
chrX:11843981-11844246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
20, 6
               

               
Conread position:
               
470-761
               

               
Cow position:
               
chrX:45005121-45005409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
470-764
               

               
Cow position:
               
chrX:3580204-3579908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
470-765
               

               
Cow position:
               
chrX:35430990-35431282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
209, 14
               

               
Conread position:
               
470-766
               

               
Cow position:
               
chrX:22813320-22813028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
92, 223
               

               
Conread position:
               
470-768
               

               
Cow position:
               
chrX:48010860-48010560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 6
               

               
Conread position:
               
470-769
               

               
Cow position:
               
chrX:4512498-4512193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
212, 23
               

               
Conread position:
               
470-769
               

               
Cow position:
               
chrX:33001154-33000861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 106
               

               
Conread position:
               
470-769
               

               
Cow position:
               
chrX:42492265-42492559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 260
               

               
Conread position:
               
471-637
               

               
Cow position:
               
chrX:35390513-35390671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
140, 24
               

               
Conread position:
               
471-694
               

               
Cow position:
               
chrX:16412029-16412248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
471-695
               

               
Cow position:
               
chrX:47601070-47601293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
140, 33
               

               
Conread position:
               
471-718
               

               
Cow position:
               
chrX:35392055-35392287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
143, 12
               

               
Conread position:
               
471-769
               

               
Cow position:
               
chrX:6278237-6278542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
471-771
               

               
Cow position:
               
chrX:27306694-27306408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
472-666
               

               
Cow position:
               
chrX:40055977-40056158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 12
               

               
Conread position:
               
472-678
               

               
Cow position:
               
chrX:597224-597427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
10, 152
               

               
Conread position:
               
472-685
               

               
Cow position:
               
chrX:48471304-48471516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 84
               

               
Conread position:
               
472-714
               

               
Cow position:
               
chrX:43008864-43008620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
473-579
               

               
Cow position:
               
chrX:15545400-15545505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
473-598
               

               
Cow position:
               
chrX:7950458-7950583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
473-620
               

               
Cow position:
               
chrX:40457316-40457455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 26
               

               
Conread position:
               
473-623
               

               
Cow position:
               
chrX:41194160-41194007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
473-681
               

               
Cow position:
               
chrX:41011139-41010942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
141, 22
               

               
Conread position:
               
473-684
               

               
Cow position:
               
chrX:11517728-11517939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
473-687
               

               
Cow position:
               
chrX:41435289-41435511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
473-689
               

               
Cow position:
               
chrX:13322183-13321970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
473-693
               

               
Cow position:
               
chrX:8327158-8326936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
473-699
               

               
Cow position:
               
chrX:7910820-7911046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
473-723
               

               
Cow position:
               
chrX:38968144-38967890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
473-769
               

               
Cow position:
               
chrX:17949240-17949529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
140, 224
               

               
Conread position:
               
473-769
               

               
Cow position:
               
chrX:34504799-34505093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
473-772
               

               
Cow position:
               
chrX:8925930-8925656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
139, 28
               

               
Conread position:
               
474-651
               

               
Cow position:
               
chrX:231775-231944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
138, 50
               

               
Conread position:
               
474-653
               

               
Cow position:
               
chrX:43658616-43658800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
474-659
               

               
Cow position:
               
chrX:34193827-34194015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
474-667
               

               
Cow position:
               
chrX:10880537-10880731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
114, 121
               

               
Conread position:
               
474-674
               

               
Cow position:
               
chrX:1396372-1396167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
474-677
               

               
Cow position:
               
chrX:23497446-23497643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
138, 99
               

               
Conread position:
               
474-679
               

               
Cow position:
               
chrX:43014408-43014627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
474-689
               

               
Cow position:
               
chrX:15545009-15545227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
17, 196
               

               
Conread position:
               
474-694
               

               
Cow position:
               
chrX:39427049-39427268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
138, 14
               

               
Conread position:
               
474-696
               

               
Cow position:
               
chrX:37542290-37542509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
137, 12
               

               
Conread position:
               
474-706
               

               
Cow position:
               
chrX:19717764-19717540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
474-708
               

               
Cow position:
               
chrX:20345704-20345470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 211
               

               
Conread position:
               
474-710
               

               
Cow position:
               
chrX:24105096-24104854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
474-711
               

               
Cow position:
               
chrX:47484011-47484250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
474-714
               

               
Cow position:
               
chrX:15546132-15545893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 59
               

               
Conread position:
               
474-714
               

               
Cow position:
               
chrX:18111629-18111389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
474-722
               

               
Cow position:
               
chrX:27431673-27431915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
474-725
               

               
Cow position:
               
chrX:16984885-16984641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
244, 15
               

               
Conread position:
               
474-725
               

               
Cow position:
               
chrX:22284088-22283838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
137, 27
               

               
Conread position:
               
474-729
               

               
Cow position:
               
chrX:30962623-30962882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
474-746
               

               
Cow position:
               
chrX:32574565-32574293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 38
               

               
Conread position:
               
474-761
               

               
Cow position:
               
chrX:18486051-18485764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
474-764
               

               
Cow position:
               
chrX:47588961-47588675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chrX:23563539-23563832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 268
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chrX:40826501-40826793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 12
               

               
Conread position:
               
474-769
               

               
Cow position:
               
chrX:45598355-45598643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
474-771
               

               
Cow position:
               
chrX:37956093-37955787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
474-771
               

               
Cow position:
               
chrX:44834404-44834695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
474-772
               

               
Cow position:
               
chrX:20339644-20339934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 55
               

               
Conread position:
               
474-772
               

               
Cow position:
               
chrX:38935528-38935235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
474-781
               

               
Cow position:
               
chrX:152155-151853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
475-586
               

               
Cow position:
               
chrX:18444149-18444260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
475-632
               

               
Cow position:
               
chrX:42165371-42165521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
136, 19
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chrX:35841049-35840865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
475-675
               

               
Cow position:
               
chrX:41363598-41363809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
475-680
               

               
Cow position:
               
chrX:31250642-31250850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
475-685
               

               
Cow position:
               
chrX:19203097-19203306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
136, 19
               

               
Conread position:
               
475-705
               

               
Cow position:
               
chrX:32747969-32747748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
136, 14
               

               
Conread position:
               
475-714
               

               
Cow position:
               
chrX:1553222-1552980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
475-716
               

               
Cow position:
               
chrX:4327929-4328174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 132
               

               
Conread position:
               
475-716
               

               
Cow position:
               
chrX:27447966-27447709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
475-725
               

               
Cow position:
               
chrX:4403571-4403311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
475-725
               

               
Cow position:
               
chrX:33654590-33654844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
475-728
               

               
Cow position:
               
chrX:34836823-34837065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
475-728
               

               
Cow position:
               
chrX:35276236-35275979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 222
               

               
Conread position:
               
475-728
               

               
Cow position:
               
chrX:47345583-47345324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 123
               

               
Conread position:
               
475-729
               

               
Cow position:
               
chrX:26205203-26205452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
49, 95
               

               
Conread position:
               
475-761
               

               
Cow position:
               
chrX:45124651-45124368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
475-764
               

               
Cow position:
               
chrX:30581-30292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
121, 53
               

               
Conread position:
               
475-764
               

               
Cow position:
               
chrX:41270715-41271034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
475-764
               

               
Cow position:
               
chrX:48237067-48236782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
475-767
               

               
Cow position:
               
chrX:45228720-45228440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
202, 26
               

               
Conread position:
               
475-768
               

               
Cow position:
               
chrX:27705837-27705546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 70
               

               
Conread position:
               
475-769
               

               
Cow position:
               
chrX:25282763-25283056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
26, 164
               

               
Conread position:
               
475-769
               

               
Cow position:
               
chrX:34412095-34411800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
86, 20
               

               
Conread position:
               
475-769
               

               
Cow position:
               
chrX:34565535-34565239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 124
               

               
Conread position:
               
475-769
               

               
Cow position:
               
chrX:41878687-41878974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 59
               

               
Conread position:
               
475-769
               

               
Cow position:
               
chrX:44656724-44657003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
137, 11
               

               
Conread position:
               
475-771
               

               
Cow position:
               
chrX:48198398-48198690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
136, 75
               

               
Conread position:
               
476-587
               

               
Cow position:
               
chrX:48077647-48077535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
476-592
               

               
Cow position:
               
chrX:11856650-11856535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
476-605
               

               
Cow position:
               
chrX:23883026-23882899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
476-610
               

               
Cow position:
               
chrX:23185089-23185222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
476-616
               

               
Cow position:
               
chrX:38080395-38080258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
476-623
               

               
Cow position:
               
chrX:783694-783546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
476-646
               

               
Cow position:
               
chrX:35509429-35509600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
8, 107
               

               
Conread position:
               
476-661
               

               
Cow position:
               
chrX:4444672-4444485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
476-661
               

               
Cow position:
               
chrX:11529587-11529407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
136, 93
               

               
Conread position:
               
476-666
               

               
Cow position:
               
chrX:4592236-4592443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
476-677
               

               
Cow position:
               
chrX:36351905-36351706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 26
               

               
Conread position:
               
476-677
               

               
Cow position:
               
chrX:36568809-36569008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
476-677
               

               
Cow position:
               
chrX:47100343-47100549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
17, 120
               

               
Conread position:
               
476-678
               

               
Cow position:
               
chrX:11674360-11674161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
476-679
               

               
Cow position:
               
chrX:37867682-37867477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
476-683
               

               
Cow position:
               
chrX:46068514-46068717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
476-686
               

               
Cow position:
               
chrX:48186288-48186501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
476-691
               

               
Cow position:
               
chrX:5876353-5876141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
476-696
               

               
Cow position:
               
chrX:21817557-21817779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 118
               

               
Conread position:
               
476-697
               

               
Cow position:
               
chrX:44995753-44995526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
476-699
               

               
Cow position:
               
chrX:32190920-32191147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
476-701
               

               
Cow position:
               
chrX:32867118-32866899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
136, 18
               

               
Conread position:
               
476-702
               

               
Cow position:
               
chrX:51653-51873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 114
               

               
Conread position:
               
476-711
               

               
Cow position:
               
chrX:29467537-29467764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
476-712
               

               
Cow position:
               
chrX:753412-753165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
476-714
               

               
Cow position:
               
chrX:21064536-21064294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
476-714
               

               
Cow position:
               
chrX:36109364-36109605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
476-714
               

               
Cow position:
               
chrX:47610040-47609801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 183
               

               
Conread position:
               
476-721
               

               
Cow position:
               
chrX:27668713-27668954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 68
               

               
Conread position:
               
476-722
               

               
Cow position:
               
chrX:12972930-12972684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
476-722
               

               
Cow position:
               
chrX:39179981-39180230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 34
               

               
Conread position:
               
476-722
               

               
Cow position:
               
chrX:44040426-44040184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 195
               

               
Conread position:
               
476-723
               

               
Cow position:
               
chrX:20677611-20677368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
138, 12
               

               
Conread position:
               
476-723
               

               
Cow position:
               
chrX:25049031-25049280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
476-726
               

               
Cow position:
               
chrX:44736598-44736861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
476-727
               

               
Cow position:
               
chrX:35659043-35658798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
136, 52
               

               
Conread position:
               
476-740
               

               
Cow position:
               
chrX:48071412-48071146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
476-761
               

               
Cow position:
               
chrX:12437033-12437304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
12, 82
               

               
Conread position:
               
476-761
               

               
Cow position:
               
chrX:44837519-44837230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 257
               

               
Conread position:
               
476-763
               

               
Cow position:
               
chrX:20887394-20887681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 59
               

               
Conread position:
               
476-764
               

               
Cow position:
               
chrX:6599524-6599821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 246
               

               
Conread position:
               
476-764
               

               
Cow position:
               
chrX:16348303-16348605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
13, 206
               

               
Conread position:
               
476-764
               

               
Cow position:
               
chrX:45110898-45110619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
136, 25
               

               
Conread position:
               
476-768
               

               
Cow position:
               
chrX:11825394-11825681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
135, 267
               

               
Conread position:
               
476-768
               

               
Cow position:
               
chrX:25815650-25815949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chrX:22921570-22921278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
135, 148
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chrX:27460118-27459814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
34, 272
               

               
Conread position:
               
476-769
               

               
Cow position:
               
chrX:46072581-46072862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 92
               

               
Conread position:
               
476-771
               

               
Cow position:
               
chrX:44201794-44202090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
18, 257
               

               
Conread position:
               
476-771
               

               
Cow position:
               
chrX:46793500-46793789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 113
               

               
Conread position:
               
476-771
               

               
Cow position:
               
chrX:48474154-48473864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
104, 33
               

               
Conread position:
               
477-576
               

               
Cow position:
               
chrX:42164660-42164561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
477-579
               

               
Cow position:
               
chrX:11195032-11194927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
477-579
               

               
Cow position:
               
chrX:42482542-42482644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
85, 7
               

               
Conread position:
               
477-587
               

               
Cow position:
               
chrX:36074348-36074237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
477-610
               

               
Cow position:
               
chrX:6856107-6855975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
477-627
               

               
Cow position:
               
chrX:36962996-36962848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
477-643
               

               
Cow position:
               
chrX:43028479-43028314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
477-645
               

               
Cow position:
               
chrX:26720441-26720602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 7
               

               
Conread position:
               
477-670
               

               
Cow position:
               
chrX:41199471-41199279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
477-685
               

               
Cow position:
               
chrX:14951106-14951313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
477-686
               

               
Cow position:
               
chrX:7404871-7405083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 164
               

               
Conread position:
               
477-690
               

               
Cow position:
               
chrX:1938262-1938045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
20, 7
               

               
Conread position:
               
477-690
               

               
Cow position:
               
chrX:34991606-34991399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
135, 22
               

               
Conread position:
               
477-692
               

               
Cow position:
               
chrX:17498571-17498355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
477-692
               

               
Cow position:
               
chrX:39555430-39555640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 154
               

               
Conread position:
               
477-697
               

               
Cow position:
               
chrX:46910056-46909843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 54
               

               
Conread position:
               
477-711
               

               
Cow position:
               
chrX:5134721-5134489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 10
               

               
Conread position:
               
477-711
               

               
Cow position:
               
chrX:30337705-30337938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
25, 174
               

               
Conread position:
               
477-721
               

               
Cow position:
               
chrX:27446931-27446690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
477-723
               

               
Cow position:
               
chrX:10865621-10865873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
477-723
               

               
Cow position:
               
chrX:40574692-40574941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 106
               

               
Conread position:
               
477-725
               

               
Cow position:
               
chrX:8493314-8493062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
134, 43
               

               
Conread position:
               
477-725
               

               
Cow position:
               
chrX:34420983-34420734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
477-725
               

               
Cow position:
               
chrX:42380862-42381112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
477-729
               

               
Cow position:
               
chrX:16836046-16836290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
135, 88
               

               
Conread position:
               
477-753
               

               
Cow position:
               
chrX:1397877-1397600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
48, 230
               

               
Conread position:
               
477-763
               

               
Cow position:
               
chrX:33466872-33466574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
477-769
               

               
Cow position:
               
chrX:41238112-41238395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
478-588
               

               
Cow position:
               
chrX:27320697-27320586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
478-608
               

               
Cow position:
               
chrX:32590158-32590288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
478-639
               

               
Cow position:
               
chrX:40108096-40108257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
17, 106
               

               
Conread position:
               
478-644
               

               
Cow position:
               
chrX:42314641-42314811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
478-651
               

               
Cow position:
               
chrX:36961956-36961790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
94, 48
               

               
Conread position:
               
478-651
               

               
Cow position:
               
chrX:42506699-42506875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
478-659
               

               
Cow position:
               
chrX:40556215-40556393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
478-666
               

               
Cow position:
               
chrX:26881833-26882021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 16
               

               
Conread position:
               
478-669
               

               
Cow position:
               
chrX:17550416-17550604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 135
               

               
Conread position:
               
478-689
               

               
Cow position:
               
chrX:42311899-42311709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
134, 48
               

               
Conread position:
               
478-699
               

               
Cow position:
               
chrX:32215474-32215260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
133, 6
               

               
Conread position:
               
478-701
               

               
Cow position:
               
chrX:8642292-8642070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 160
               

               
Conread position:
               
478-720
               

               
Cow position:
               
chrX:8759871-8759628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 160
               

               
Conread position:
               
478-725
               

               
Cow position:
               
chrX:1175741-1175982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
17, 78
               

               
Conread position:
               
478-764
               

               
Cow position:
               
chrX:9650780-9651063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
478-764
               

               
Cow position:
               
chrX:21672810-21672519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
39, 6
               

               
Conread position:
               
478-764
               

               
Cow position:
               
chrX:36866419-36866134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 26
               

               
Conread position:
               
478-764
               

               
Cow position:
               
chrX:46546626-46546914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
478-767
               

               
Cow position:
               
chrX:43150678-43150380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 125
               

               
Conread position:
               
478-769
               

               
Cow position:
               
chrX:40480603-40480910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
478-769
               

               
Cow position:
               
chrX:46588067-46587778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 77
               

               
Conread position:
               
478-771
               

               
Cow position:
               
chrX:45447507-45447212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 254
               

               
Conread position:
               
478-771
               

               
Cow position:
               
chrX:45489170-45488875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
12, 269
               

               
Conread position:
               
478-771
               

               
Cow position:
               
chrX:48570595-48570887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
12, 251
               

               
Conread position:
               
479-632
               

               
Cow position:
               
chrX:10479998-10479842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
479-650
               

               
Cow position:
               
chrX:1571350-1571514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 83
               

               
Conread position:
               
479-652
               

               
Cow position:
               
chrX:13458892-13459057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 53
               

               
Conread position:
               
479-694
               

               
Cow position:
               
chrX:18439244-18439027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
479-701
               

               
Cow position:
               
chrX:24425758-24425978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
479-704
               

               
Cow position:
               
chrX:4612628-4612861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
479-706
               

               
Cow position:
               
chrX:5026496-5026275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
479-714
               

               
Cow position:
               
chrX:5512365-5512605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
479-716
               

               
Cow position:
               
chrX:19902021-19902262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
479-716
               

               
Cow position:
               
chrX:24170479-24170720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 157
               

               
Conread position:
               
479-758
               

               
Cow position:
               
chrX:23498418-23498709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
479-761
               

               
Cow position:
               
chrX:44238511-44238799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 256
               

               
Conread position:
               
479-764
               

               
Cow position:
               
chrX:296639-296358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
23, 180
               

               
Conread position:
               
479-764
               

               
Cow position:
               
chrX:14955521-14955801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
41, 116
               

               
Conread position:
               
479-764
               

               
Cow position:
               
chrX:43050316-43050028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
111, 82
               

               
Conread position:
               
479-769
               

               
Cow position:
               
chrX:44192197-44192491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 5
               

               
Conread position:
               
480-661
               

               
Cow position:
               
chrX:11589122-11589303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
480-677
               

               
Cow position:
               
chrX:4602695-4602890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
131, 21
               

               
Conread position:
               
481-659
               

               
Cow position:
               
chrX:16801024-16801197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
129, 21
               

               
Conread position:
               
482-588
               

               
Cow position:
               
chrX:1464670-1464776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
482-764
               

               
Cow position:
               
chrX:42855706-42855416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
482-767
               

               
Cow position:
               
chrX:34222956-34222674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 34
               

               
Conread position:
               
483-666
               

               
Cow position:
               
chrX:11602245-11602424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
129, 45
               

               
Conread position:
               
483-722
               

               
Cow position:
               
chrX:11656320-11656084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 87
               

               
Conread position:
               
483-728
               

               
Cow position:
               
chrX:42927588-42927829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
129, 57
               

               
Conread position:
               
483-761
               

               
Cow position:
               
chrX:45254339-45254617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
7, 246
               

               
Conread position:
               
483-763
               

               
Cow position:
               
chrX:7278149-7277877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
483-764
               

               
Cow position:
               
chrX:37489973-37489686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 256
               

               
Conread position:
               
483-769
               

               
Cow position:
               
chrX:36356348-36356071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 86
               

               
Conread position:
               
483-769
               

               
Cow position:
               
chrX:42246938-42247228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
483-769
               

               
Cow position:
               
chrX:44339079-44339366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 43
               

               
Conread position:
               
483-772
               

               
Cow position:
               
chrX:35822575-35822297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
484-588
               

               
Cow position:
               
chrX:3130883-3130780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
484-645
               

               
Cow position:
               
chrX:11670929-11670766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
484-645
               

               
Cow position:
               
chrX:37717964-37717802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 155
               

               
Conread position:
               
484-653
               

               
Cow position:
               
chrX:29681879-29682039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
128, 17
               

               
Conread position:
               
484-653
               

               
Cow position:
               
chrX:36260921-36260752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
130, 10
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chrX:41215564-41215389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
484-666
               

               
Cow position:
               
chrX:45044694-45044511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
103, 18
               

               
Conread position:
               
484-671
               

               
Cow position:
               
chrX:15100219-15100037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
116, 60
               

               
Conread position:
               
484-671
               

               
Cow position:
               
chrX:39642387-39642568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
128, 95
               

               
Conread position:
               
484-672
               

               
Cow position:
               
chrX:47191079-47191267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 99
               

               
Conread position:
               
484-673
               

               
Cow position:
               
chrX:4169786-4169979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
6, 106
               

               
Conread position:
               
484-678
               

               
Cow position:
               
chrX:27442297-27442492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
484-680
               

               
Cow position:
               
chrX:18030174-18030372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
484-686
               

               
Cow position:
               
chrX:40046327-40046536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 189
               

               
Conread position:
               
484-686
               

               
Cow position:
               
chrX:48495239-48495036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
87, 181
               

               
Conread position:
               
484-691
               

               
Cow position:
               
chrX:45412002-45412203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
484-692
               

               
Cow position:
               
chrX:33020680-33020470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
484-693
               

               
Cow position:
               
chrX:23136972-23136772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
484-695
               

               
Cow position:
               
chrX:25930879-25930667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
99, 11
               

               
Conread position:
               
484-698
               

               
Cow position:
               
chrX:11454415-11454213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
73, 79
               

               
Conread position:
               
484-699
               

               
Cow position:
               
chrX:23358878-23359085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
484-701
               

               
Cow position:
               
chrX:37062326-37062561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
484-702
               

               
Cow position:
               
chrX:16763687-16763904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
13, 82
               

               
Conread position:
               
484-711
               

               
Cow position:
               
chrX:17795220-17794995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
130, 32
               

               
Conread position:
               
484-711
               

               
Cow position:
               
chrX:24457306-24457538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
484-711
               

               
Cow position:
               
chrX:27145841-27145618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
484-712
               

               
Cow position:
               
chrX:19356705-19356482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 161
               

               
Conread position:
               
484-714
               

               
Cow position:
               
chrX:40183113-40183343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
128, 115
               

               
Conread position:
               
484-720
               

               
Cow position:
               
chrX:15231419-15231655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
484-721
               

               
Cow position:
               
chrX:37856602-37856356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
484-721
               

               
Cow position:
               
chrX:45429790-45430018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
484-725
               

               
Cow position:
               
chrX:10829677-10829432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
484-728
               

               
Cow position:
               
chrX:9634950-9635195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
484-728
               

               
Cow position:
               
chrX:16409855-16409599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
484-728
               

               
Cow position:
               
chrX:23335734-23335975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 178
               

               
Conread position:
               
484-728
               

               
Cow position:
               
chrX:30672145-30672399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 17
               

               
Conread position:
               
484-728
               

               
Cow position:
               
chrX:42331514-42331275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
484-729
               

               
Cow position:
               
chrX:34454900-34454651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
116, 170
               

               
Conread position:
               
484-732
               

               
Cow position:
               
chrX:39290594-39290352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
484-744
               

               
Cow position:
               
chrX:42449772-42450033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 248
               

               
Conread position:
               
484-745
               

               
Cow position:
               
chrX:43115391-43115131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
484-751
               

               
Cow position:
               
chrX:17966565-17966319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
128, 45
               

               
Conread position:
               
484-757
               

               
Cow position:
               
chrX:31729678-31729412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 95
               

               
Conread position:
               
484-761
               

               
Cow position:
               
chrX:46722346-46722624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 246
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chrX:7648172-7648438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chrX:11325870-11326137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chrX:11633923-11633643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 106
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chrX:12095531-12095810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chrX:19394796-19394515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
96, 260
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chrX:19660210-19660500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 171
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chrX:24365581-24365862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 148
               

               
Conread position:
               
484-764
               

               
Cow position:
               
chrX:41674338-41674073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
125, 40
               

               
Conread position:
               
484-765
               

               
Cow position:
               
chrX:22115075-22115354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
484-767
               

               
Cow position:
               
chrX:34441212-34441491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 213
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chrX:22387002-22387284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chrX:31948692-31948979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chrX:35986054-35985776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
88, 17
               

               
Conread position:
               
484-769
               

               
Cow position:
               
chrX:36976189-36975908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 24
               

               
Conread position:
               
484-770
               

               
Cow position:
               
chrX:48142061-48141778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
129, 71
               

               
Conread position:
               
484-771
               

               
Cow position:
               
chrX:3654844-3654564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
484-771
               

               
Cow position:
               
chrX:44961995-44961705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
484-771
               

               
Cow position:
               
chrX:45064547-45064835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
484-771
               

               
Cow position:
               
chrX:47238481-47238194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
12, 113
               

               
Conread position:
               
484-776
               

               
Cow position:
               
chrX:12290959-12290673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 85
               

               
Conread position:
               
485-605
               

               
Cow position:
               
chrX:44873106-44873227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
485-728
               

               
Cow position:
               
chrX:13177243-13177481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
485-764
               

               
Cow position:
               
chrX:25035141-25035416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 246
               

               
Conread position:
               
485-764
               

               
Cow position:
               
chrX:26493247-26492970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
126, 244
               

               
Conread position:
               
485-767
               

               
Cow position:
               
chrX:6407784-6407504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 167
               

               
Conread position:
               
486-661
               

               
Cow position:
               
chrX:4750099-4750268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 53
               

               
Conread position:
               
486-687
               

               
Cow position:
               
chrX:44123488-44123293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
128, 67
               

               
Conread position:
               
486-696
               

               
Cow position:
               
chrX:34270801-34270592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
11, 72
               

               
Conread position:
               
486-764
               

               
Cow position:
               
chrX:7646476-7646216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
486-769
               

               
Cow position:
               
chrX:4296585-4296861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
125, 231
               

               
Conread position:
               
487-589
               

               
Cow position:
               
chrX:37043304-37043202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
487-614
               

               
Cow position:
               
chrX:44235281-44235151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
487-632
               

               
Cow position:
               
chrX:26367464-26367610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
23, 19
               

               
Conread position:
               
487-642
               

               
Cow position:
               
chrX:13135315-13135471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
487-660
               

               
Cow position:
               
chrX:12197308-12197133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 44
               

               
Conread position:
               
487-679
               

               
Cow position:
               
chrX:42461389-42461572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
122, 82
               

               
Conread position:
               
487-690
               

               
Cow position:
               
chrX:46079324-46079120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
92, 14
               

               
Conread position:
               
487-692
               

               
Cow position:
               
chrX:46533066-46533272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
487-695
               

               
Cow position:
               
chrX:2551316-2551121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
12, 80
               

               
Conread position:
               
487-696
               

               
Cow position:
               
chrX:11781484-11781282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
487-705
               

               
Cow position:
               
chrX:15139261-15139472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
88, 12
               

               
Conread position:
               
487-723
               

               
Cow position:
               
chrX:34377177-34376946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
125, 96
               

               
Conread position:
               
487-757
               

               
Cow position:
               
chrX:48004084-48003817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
487-758
               

               
Cow position:
               
chrX:35269094-35268834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 44
               

               
Conread position:
               
487-761
               

               
Cow position:
               
chrX:40531786-40532078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
11, 245
               

               
Conread position:
               
487-764
               

               
Cow position:
               
chrX:28013200-28013484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
487-764
               

               
Cow position:
               
chrX:34315766-34315479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
487-769
               

               
Cow position:
               
chrX:12250054-12249760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
487-769
               

               
Cow position:
               
chrX:30133086-30133362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 47
               

               
Conread position:
               
488-710
               

               
Cow position:
               
chrX:908178-907961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
488-728
               

               
Cow position:
               
chrX:32910331-32910102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
124, 11
               

               
Conread position:
               
488-764
               

               
Cow position:
               
chrX:21986064-21986329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
124, 69
               

               
Conread position:
               
488-764
               

               
Cow position:
               
chrX:47046264-47046543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
57, 182
               

               
Conread position:
               
488-769
               

               
Cow position:
               
chrX:34314258-34313987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
124, 79
               

               
Conread position:
               
488-771
               

               
Cow position:
               
chrX:44954731-44954449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
125, 240
               

               
Conread position:
               
488-772
               

               
Cow position:
               
chrX:9361119-9360843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
488-781
               

               
Cow position:
               
chrX:19469278-19469558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
129, 89
               

               
Conread position:
               
489-641
               

               
Cow position:
               
chrX:1996215-1996368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
489-644
               

               
Cow position:
               
chrX:42515893-42516049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
489-660
               

               
Cow position:
               
chrX:45657699-45657878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
489-662
               

               
Cow position:
               
chrX:10154812-10154984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
93, 142
               

               
Conread position:
               
489-662
               

               
Cow position:
               
chrX:24202840-24202667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
124, 105
               

               
Conread position:
               
489-667
               

               
Cow position:
               
chrX:11650885-11650706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
489-668
               

               
Cow position:
               
chrX:17525642-17525810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
125, 13
               

               
Conread position:
               
489-674
               

               
Cow position:
               
chrX:9770450-9770638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
96, 169
               

               
Conread position:
               
489-675
               

               
Cow position:
               
chrX:1121130-1121317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
489-683
               

               
Cow position:
               
chrX:22864025-22864226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
489-687
               

               
Cow position:
               
chrX:37751875-37752068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
123, 75
               

               
Conread position:
               
489-689
               

               
Cow position:
               
chrX:41404180-41403980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
489-689
               

               
Cow position:
               
chrX:41410728-41410528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
489-692
               

               
Cow position:
               
chrX:42050033-42050237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
489-693
               

               
Cow position:
               
chrX:27667677-27667457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
489-693
               

               
Cow position:
               
chrX:47155425-47155638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
91, 13
               

               
Conread position:
               
489-695
               

               
Cow position:
               
chrX:9063366-9063155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
489-696
               

               
Cow position:
               
chrX:2314382-2314590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
489-696
               

               
Cow position:
               
chrX:13370152-13369944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
489-697
               

               
Cow position:
               
chrX:48118501-48118704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
489-698
               

               
Cow position:
               
chrX:45929607-45929397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
489-701
               

               
Cow position:
               
chrX:2206356-2206568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
83, 12
               

               
Conread position:
               
489-706
               

               
Cow position:
               
chrX:43011907-43012129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
81, 137
               

               
Conread position:
               
489-711
               

               
Cow position:
               
chrX:27175236-27175017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 186
               

               
Conread position:
               
489-714
               

               
Cow position:
               
chrX:24335840-24336066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
489-714
               

               
Cow position:
               
chrX:47749918-47750141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
489-719
               

               
Cow position:
               
chrX:16323779-16324008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
73, 175
               

               
Conread position:
               
489-723
               

               
Cow position:
               
chrX:6267906-6267670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
78, 134
               

               
Conread position:
               
489-724
               

               
Cow position:
               
chrX:32877142-32877370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
489-724
               

               
Cow position:
               
chrX:37072622-37072391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
121, 80
               

               
Conread position:
               
489-725
               

               
Cow position:
               
chrX:40175412-40175168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 192
               

               
Conread position:
               
489-725
               

               
Cow position:
               
chrX:42480063-42479833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
489-726
               

               
Cow position:
               
chrX:31829207-31829464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
489-728
               

               
Cow position:
               
chrX:13122180-13121935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
489-728
               

               
Cow position:
               
chrX:38587610-38587846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
125, 13
               

               
Conread position:
               
489-753
               

               
Cow position:
               
chrX:45403309-45403572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
108, 102
               

               
Conread position:
               
489-760
               

               
Cow position:
               
chrX:16996730-16996456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
39, 258
               

               
Conread position:
               
489-761
               

               
Cow position:
               
chrX:1466401-1466127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
7, 97
               

               
Conread position:
               
489-761
               

               
Cow position:
               
chrX:12979599-12979871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
123, 84
               

               
Conread position:
               
489-761
               

               
Cow position:
               
chrX:44590825-44591096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
124, 239
               

               
Conread position:
               
489-761
               

               
Cow position:
               
chrX:48397590-48397862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
58, 240
               

               
Conread position:
               
489-761
               

               
Cow position:
               
chrX:48574883-48574612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
122, 239
               

               
Conread position:
               
489-762
               

               
Cow position:
               
chrX:34503162-34502887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
489-764
               

               
Cow position:
               
chrX:161636-161376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 39
               

               
Conread position:
               
489-764
               

               
Cow position:
               
chrX:18204230-18204498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 39
               

               
Conread position:
               
489-764
               

               
Cow position:
               
chrX:41123281-41123025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
123, 68
               

               
Conread position:
               
489-764
               

               
Cow position:
               
chrX:41871296-41871028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chrX:2674717-2674999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 177
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chrX:13147220-13146939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
31, 150
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chrX:21328150-21327864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 248
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chrX:21642245-21642520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
123, 225
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chrX:25037228-25036945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 247
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chrX:36061395-36061116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
133, 116
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chrX:38654196-38654474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
68, 110
               

               
Conread position:
               
489-769
               

               
Cow position:
               
chrX:38964332-38964063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 13
               

               
Conread position:
               
489-771
               

               
Cow position:
               
chrX:44091159-44090879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
122, 239
               

               
Conread position:
               
489-771
               

               
Cow position:
               
chrX:44859626-44859906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
124, 254
               

               
Conread position:
               
489-772
               

               
Cow position:
               
chrX:27380596-27380308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
122, 260
               

               
Conread position:
               
490-602
               

               
Cow position:
               
chrX:27226717-27226605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
490-643
               

               
Cow position:
               
chrX:46893335-46893182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
490-646
               

               
Cow position:
               
chrX:17929233-17929080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 83
               

               
Conread position:
               
490-661
               

               
Cow position:
               
chrX:3494815-3494981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
121, 89
               

               
Conread position:
               
490-677
               

               
Cow position:
               
chrX:37867489-37867301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
490-678
               

               
Cow position:
               
chrX:6640659-6640474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
177, 93
               

               
Conread position:
               
490-688
               

               
Cow position:
               
chrX:16555990-16556180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
114, 11
               

               
Conread position:
               
490-697
               

               
Cow position:
               
chrX:11584398-11584187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 115
               

               
Conread position:
               
490-711
               

               
Cow position:
               
chrX:48262840-48262620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
123, 65
               

               
Conread position:
               
490-716
               

               
Cow position:
               
chrX:19018594-19018822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 12
               

               
Conread position:
               
490-722
               

               
Cow position:
               
chrX:17524149-17524381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
490-724
               

               
Cow position:
               
chrX:17704619-17704390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
123, 39
               

               
Conread position:
               
490-725
               

               
Cow position:
               
chrX:40035207-40035441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
122, 21
               

               
Conread position:
               
490-725
               

               
Cow position:
               
chrX:43320819-43321057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
123, 41
               

               
Conread position:
               
490-726
               

               
Cow position:
               
chrX:47255684-47255443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
490-728
               

               
Cow position:
               
chrX:32330406-32330165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
121, 184
               

               
Conread position:
               
490-746
               

               
Cow position:
               
chrX:4825613-4825855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
490-759
               

               
Cow position:
               
chrX:31442604-31442863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
121, 75
               

               
Conread position:
               
490-761
               

               
Cow position:
               
chrX:22392753-22393020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
124, 78
               

               
Conread position:
               
490-764
               

               
Cow position:
               
chrX:9201778-9201513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
44, 83
               

               
Conread position:
               
490-764
               

               
Cow position:
               
chrX:24332012-24331742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 229
               

               
Conread position:
               
490-766
               

               
Cow position:
               
chrX:31515403-31515129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
490-769
               

               
Cow position:
               
chrX:26881327-26881610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 54
               

               
Conread position:
               
491-579
               

               
Cow position:
               
chrX:33865062-33865151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
491-660
               

               
Cow position:
               
chrX:23182733-23182918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
491-685
               

               
Cow position:
               
chrX:41858649-41858842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
491-690
               

               
Cow position:
               
chrX:10279108-10278899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
91, 13
               

               
Conread position:
               
491-692
               

               
Cow position:
               
chrX:42539781-42539593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
491-697
               

               
Cow position:
               
chrX:34398550-34398756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
491-697
               

               
Cow position:
               
chrX:41790193-41790401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
491-698
               

               
Cow position:
               
chrX:1960191-1960398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 77
               

               
Conread position:
               
491-705
               

               
Cow position:
               
chrX:28068085-28067870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
491-710
               

               
Cow position:
               
chrX:7863345-7863566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
491-721
               

               
Cow position:
               
chrX:4559968-4559743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 173
               

               
Conread position:
               
491-724
               

               
Cow position:
               
chrX:24054894-24054672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
121, 11
               

               
Conread position:
               
491-725
               

               
Cow position:
               
chrX:20957469-20957238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
491-728
               

               
Cow position:
               
chrX:45391479-45391721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
491-729
               

               
Cow position:
               
chrX:34792091-34792315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
119, 10
               

               
Conread position:
               
491-748
               

               
Cow position:
               
chrX:25412153-25411886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
491-764
               

               
Cow position:
               
chrX:15006925-15007186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
120, 70
               

               
Conread position:
               
491-764
               

               
Cow position:
               
chrX:24749321-24749050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
89, 175
               
UCSC Genome Browser

               
Conread position:
               
491-764
               

               
Cow position:
               
chrX:45977159-45976885 (view  custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 45
               
UCSC Genome Browser

               
               
               
Conread position:
491-769

               
               
               
Cow position:
chrX:13913307-13913025 (view  custom track)

               
               
               
Alignm length:
288

               
               
               
Alignm identity:
196

               
               
               
Alignm E-value:
9e-29

               
               
               
Alignm gaps (pig, cow):
95, 10
UCSC Genome Browser

               
               
               
Conread position:
492-627

               
               
               
Cow position:
chrX:5075528-5075671 (view  custom track)

               
               
               
Alignm length:
144

               
               
               
Alignm identity:
114

               
               
               
Alignm E-value:
6e-25

               
               
               
Alignm gaps (pig, cow):
83, 0

               
               
               Conread position:492-645
               
               
               Cow position:chrX:31279696-31279844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):120, 9

               
               
               Conread position:492-645
               
               
               Cow position:chrX:34108125-34108278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:492-645
               
               
               Cow position:chrX:35614830-35614676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:492-652
               
               
               Cow position:chrX:4486791-4486951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):120, 91

               
               
               Conread position:492-655
               
               
               Cow position:chrX:30789296-30789461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:492-669
               
               
               Cow position:chrX:27170967-27170795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:492-674
               
               
               Cow position:chrX:16770298-16770115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:492-677
               
               
               Cow position:chrX:41166596-41166777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:492-685
               
               
               Cow position:chrX:27415355-27415540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:492-688
               
               
               Cow position:chrX:42760486-42760289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:492-689
               
               
               Cow position:chrX:45843359-45843558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:492-716
               
               
               Cow position:chrX:1122314-1122534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:492-716
               
               
               Cow position:chrX:41454720-41454945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:492-724
               
               
               Cow position:chrX:29230240-29230000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:492-728
               
               
               Cow position:chrX:4632621-4632863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:492-732
               
               
               Cow position:chrX:17293189-17292945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):119, 240

               
               
               Conread position:492-764
               
               
               Cow position:chrX:4109416-4109153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 9

               
               
               Conread position:492-764
               
               
               Cow position:chrX:14973523-14973777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:492-764
               
               
               Cow position:chrX:38094293-38094558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 39

               
               
               Conread position:492-764
               
               
               Cow position:chrX:40685096-40685368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):120, 89

               
               
               Conread position:492-771
               
               
               Cow position:chrX:48532547-48532271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):121, 87

               
               
               Conread position:493-658
               
               
               Cow position:chrX:25826908-25827068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:493-670
               
               
               Cow position:chrX:6480363-6480541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:494-610
               
               
               Cow position:chrX:19161899-19162015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:494-679
               
               
               Cow position:chrX:41062466-41062274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 111

               
               
               Conread position:494-680
               
               
               Cow position:chrX:1101781-1101602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):117, 94

               
               
               Conread position:494-691
               
               
               Cow position:chrX:12219377-12219179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:494-695
               
               
               Cow position:chrX:27416326-27416122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):86, 102

               
               
               Conread position:494-709
               
               
               Cow position:chrX:20583891-20583682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:494-714
               
               
               Cow position:chrX:15485402-15485624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:494-714
               
               
               Cow position:chrX:16541425-16541645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):117, 191

               
               
               Conread position:494-714
               
               
               Cow position:chrX:21663526-21663305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:494-714
               
               
               Cow position:chrX:25845842-25846062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:494-720
               
               
               Cow position:chrX:23471637-23471862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 99

               
               
               Conread position:494-722
               
               
               Cow position:chrX:10251971-10252195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):116, 88

               
               
               Conread position:494-742
               
               
               Cow position:chrX:36391957-36392205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):185, 85

               
               
               Conread position:494-743
               
               
               Cow position:chrX:18873030-18873285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):117, 235

               
               
               Conread position:494-759
               
               
               Cow position:chrX:41941854-41941594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 61

               
               
               Conread position:494-764
               
               
               Cow position:chrX:40108282-40108553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:494-766
               
               
               Cow position:chrX:16762999-16762730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 85

               
               
               Conread position:494-769
               
               
               Cow position:chrX:9251932-9252204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):113, 75

               
               
               Conread position:494-769
               
               
               Cow position:chrX:29601597-29601872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:494-769
               
               
               Cow position:chrX:31250621-31250345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 250

               
               
               Conread position:494-769
               
               
               Cow position:chrX:41027391-41027114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 240

               
               
               Conread position:495-579
               
               
               Cow position:chrX:11501126-11501042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:75
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-669
               
               
               Cow position:chrX:5915421-5915244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:495-673
               
               
               Cow position:chrX:23485760-23485573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:495-678
               
               
               Cow position:chrX:6634575-6634391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:495-689
               
               
               Cow position:chrX:40451838-40452048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:495-702
               
               
               Cow position:chrX:40649132-40648919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):77, 194

               
               
               Conread position:495-707
               
               
               Cow position:chrX:30922403-30922189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:495-720
               
               
               Cow position:chrX:40337141-40336916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 169

               
               
               Conread position:495-725
               
               
               Cow position:chrX:20677912-20678138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:495-725
               
               
               Cow position:chrX:38218943-38218714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 88

               
               
               Conread position:495-728
               
               
               Cow position:chrX:31373780-31373536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 230

               
               
               Conread position:495-749
               
               
               Cow position:chrX:29541998-29542241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):225, 74

               
               
               Conread position:495-764
               
               
               Cow position:chrX:45449142-45448862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:495-769
               
               
               Cow position:chrX:5637949-5638210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):93, 79

               
               
               Conread position:495-769
               
               
               Cow position:chrX:29680017-29680302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 249

               
               
               Conread position:495-769
               
               
               Cow position:chrX:38560780-38560516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 70

               
               
               Conread position:495-769
               
               
               Cow position:chrX:47873105-47873378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):7, 109

               
               
               Conread position:496-582
               
               
               Cow position:chrX:22134792-22134878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:76
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:496-644
               
               
               Cow position:chrX:37844229-37844076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:496-666
               
               
               Cow position:chrX:9451570-9451404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 57

               
               
               Conread position:496-670
               
               
               Cow position:chrX:20977284-20977454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):111, 42

               
               
               Conread position:496-714
               
               
               Cow position:chrX:25463883-25464102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:496-722
               
               
               Cow position:chrX:36283569-36283341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:496-725
               
               
               Cow position:chrX:46032499-46032727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 35

               
               
               Conread position:496-728
               
               
               Cow position:chrX:9425533-9425749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):115, 50

               
               
               Conread position:496-728
               
               
               Cow position:chrX:25207632-25207857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):115, 77

               
               
               Conread position:496-732
               
               
               Cow position:chrX:28846664-28846900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):112, 13

               
               
               Conread position:496-762
               
               
               Cow position:chrX:4399347-4399088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 85

               
               
               Conread position:496-766
               
               
               Cow position:chrX:27261419-27261149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 30

               
               
               Conread position:496-769
               
               
               Cow position:chrX:21593520-21593246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:496-769
               
               
               Cow position:chrX:38549676-38549405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:496-772
               
               
               Cow position:chrX:47279707-47279977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 108

               
               
               Conread position:497-680
               
               
               Cow position:chrX:41990895-41991089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:497-764
               
               
               Cow position:chrX:2301151-2300886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):72, 59

               
               
               Conread position:498-708
               
               
               Cow position:chrX:19761976-19761771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:498-728
               
               
               Cow position:chrX:11653994-11653761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 76

               
               
               Conread position:498-728
               
               
               Cow position:chrX:29478949-29478721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 77

               
               
               Conread position:498-774
               
               
               Cow position:chrX:4645687-4645959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 53

               
               
               Conread position:499-711
               
               
               Cow position:chrX:40269734-40269505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 50

               
               
               Conread position:499-718
               
               
               Cow position:chrX:35382816-35383030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):112, 63

               
               
               Conread position:499-718
               
               
               Cow position:chrX:37831386-37831610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):99, 27

               
               
               Conread position:499-724
               
               
               Cow position:chrX:35278536-35278330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:499-760
               
               
               Cow position:chrX:38642468-38642216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):113, 36

               
               
               Conread position:499-764
               
               
               Cow position:chrX:20881735-20881976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):113, 69

               
               
               Conread position:499-769
               
               
               Cow position:chrX:18694696-18694966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:499-769
               
               
               Cow position:chrX:39220314-39220037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 223

               
               
               Conread position:499-769
               
               
               Cow position:chrX:44397237-44396976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):93, 140

               
               
               Conread position:499-773
               
               
               Cow position:chrX:27074825-27075096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:500-724
               
               
               Cow position:chrX:48183085-48183310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 42

               
               
               Conread position:501-608
               
               
               Cow position:chrX:18196224-18196116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:501-610
               
               
               Cow position:chrX:16532734-16532622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:501-636
               
               
               Cow position:chrX:39886988-39887125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:501-645
               
               
               Cow position:chrX:28167203-28167059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):113, 81

               
               
               Conread position:501-650
               
               
               Cow position:chrX:3543089-3542931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:501-655
               
               
               Cow position:chrX:33678246-33678403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:501-658
               
               
               Cow position:chrX:38577868-38577712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):111, 85

               
               
               Conread position:501-659
               
               
               Cow position:chrX:48574130-48574291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:501-661
               
               
               Cow position:chrX:22552755-22552915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):110, 28

               
               
               Conread position:501-670
               
               
               Cow position:chrX:28107070-28106902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):109, 68

               
               
               Conread position:501-678
               
               
               Cow position:chrX:27202793-27202617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):110, 61

               
               
               Conread position:501-678
               
               
               Cow position:chrX:31983354-31983538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:501-680
               
               
               Cow position:chrX:756144-755969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):111, 35

               
               
               Conread position:501-689
               
               
               Cow position:chrX:876623-876806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:155
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):110, 52

               
               
               Conread position:501-703
               
               
               Cow position:chrX:17298484-17298280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):86, 149

               
               
               Conread position:501-706
               
               
               Cow position:chrX:13924085-13923884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):110, 68

               
               
               Conread position:501-711
               
               
               Cow position:chrX:3494597-3494808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:501-714
               
               
               Cow position:chrX:46022999-46022786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):110, 171

               
               
               Conread position:501-728
               
               
               Cow position:chrX:11762787-11763004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):110, 72

               
               
               Conread position:501-740
               
               
               Cow position:chrX:9272233-9272483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:501-763
               
               
               Cow position:chrX:20168779-20168522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 28

               
               
               Conread position:501-763
               
               
               Cow position:chrX:40680839-40680575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:501-764
               
               
               Cow position:chrX:27508800-27509060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:501-764
               
               
               Cow position:chrX:38321159-38321424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):113, 89

               
               
               Conread position:501-764
               
               
               Cow position:chrX:47210612-47210882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:501-764
               
               
               Cow position:chrX:48558970-48558710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 46

               
               
               Conread position:501-769
               
               
               Cow position:chrX:10516478-10516208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 233

               
               
               Conread position:501-769
               
               
               Cow position:chrX:36393117-36393386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):110, 146

               
               
               Conread position:501-772
               
               
               Cow position:chrX:46532266-46532546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:502-615
               
               
               Cow position:chrX:3501107-3501220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 85

               
               
               Conread position:502-627
               
               
               Cow position:chrX:42159165-42159039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:502-630
               
               
               Cow position:chrX:42216410-42216536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 66

               
               
               Conread position:502-695
               
               
               Cow position:chrX:37749768-37749953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:502-699
               
               
               Cow position:chrX:35681790-35681592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 88

               
               
               Conread position:502-728
               
               
               Cow position:chrX:28632259-28632488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:502-761
               
               
               Cow position:chrX:8869181-8869438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):107, 70

               
               
               Conread position:502-766
               
               
               Cow position:chrX:31489744-31489481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 253

               
               
               Conread position:502-776
               
               
               Cow position:chrX:36198198-36197923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:503-680
               
               
               Cow position:chrX:13347491-13347318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):108, 128

               
               
               Conread position:503-764
               
               
               Cow position:chrX:6559234-6559482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):108, 117

               
               
               Conread position:504-779
               
               
               Cow position:chrX:45875611-45875342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:505-701
               
               
               Cow position:chrX:36921921-36922118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):90, 48

               
               
               Conread position:505-768
               
               
               Cow position:chrX:20152068-20151809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):107, 57

               
               
               Conread position:506-627
               
               
               Cow position:chrX:40583094-40583216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:506-707
               
               
               Cow position:chrX:3507783-3507580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):105, 63

               
               
               Conread position:506-709
               
               
               Cow position:chrX:31480185-31479987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):93, 65

               
               
               Conread position:506-711
               
               
               Cow position:chrX:1055162-1055367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):105, 81

               
               
               Conread position:506-714
               
               
               Cow position:chrX:27515078-27514869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 50

               
               
               Conread position:506-725
               
               
               Cow position:chrX:14985943-14986151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 47

               
               
               Conread position:506-729
               
               
               Cow position:chrX:31436688-31436470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):106, 70

               
               
               Conread position:506-740
               
               
               Cow position:chrX:19965172-19965411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:506-744
               
               
               Cow position:chrX:42282796-42282559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 131

               
               
               Conread position:506-744
               
               
               Cow position:chrX:48019912-48020135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:507-677
               
               
               Cow position:chrX:25048884-25049051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):104, 54

               
               
               Conread position:508-654
               
               
               Cow position:chrX:11678796-11678648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:508-655
               
               
               Cow position:chrX:39094116-39094252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:508-658
               
               
               Cow position:chrX:4366562-4366407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):104, 61

               
               
               Conread position:508-693
               
               
               Cow position:chrX:31986355-31986542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):103, 82

               
               
               Conread position:508-693
               
               
               Cow position:chrX:48822125-48822310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):103, 78

               
               
               Conread position:508-706
               
               
               Cow position:chrX:41809958-41810149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):104, 65

               
               
               Conread position:508-711
               
               
               Cow position:chrX:15597245-15597041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:508-754
               
               
               Cow position:chrX:8731311-8731060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 156

               
               
               Conread position:508-764
               
               
               Cow position:chrX:1360299-1360049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:508-767
               
               
               Cow position:chrX:10831264-10831533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 123

               
               
               Conread position:508-769
               
               
               Cow position:chrX:27228346-27228086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 226

               
               
               Conread position:508-769
               
               
               Cow position:chrX:44702848-44703114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 231

               
               
               Conread position:508-769
               
               
               Cow position:chrX:47344516-47344252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:508-772
               
               
               Cow position:chrX:37119792-37119549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 56

               
               
               Conread position:509-676
               
               
               Cow position:chrX:7337063-7336890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):20, 89

               
               
               Conread position:509-683
               
               
               Cow position:chrX:10237697-10237870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:146
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:509-685
               
               
               Cow position:chrX:11813290-11813116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 148

               
               
               Conread position:509-694
               
               
               Cow position:chrX:41262423-41262613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:509-717
               
               
               Cow position:chrX:28837100-28836902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):102, 22

               
               
               Conread position:509-758
               
               
               Cow position:chrX:30840757-30840508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):103, 70

               
               
               Conread position:509-761
               
               
               Cow position:chrX:44796600-44796348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):104, 220

               
               
               Conread position:509-762
               
               
               Cow position:chrX:34554940-34554691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 200

               
               
               Conread position:509-764
               
               
               Cow position:chrX:1615842-1616081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):215, 47

               
               
               Conread position:509-764
               
               
               Cow position:chrX:48646393-48646644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:509-766
               
               
               Cow position:chrX:13868920-13868664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 82

               
               
               Conread position:509-769
               
               
               Cow position:chrX:842371-842118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):102, 22

               
               
               Conread position:509-769
               
               
               Cow position:chrX:29938307-29938047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 51

               
               
               Conread position:509-769
               
               
               Cow position:chrX:32821256-32820988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):62, 182

               
               
               Conread position:509-769
               
               
               Cow position:chrX:38208338-38208585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:509-771
               
               
               Cow position:chrX:47358530-47358264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):104, 240

               
               
               Conread position:509-772
               
               
               Cow position:chrX:6488781-6488535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:510-678
               
               
               Cow position:chrX:16007542-16007711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:510-687
               
               
               Cow position:chrX:13144662-13144484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:510-711
               
               
               Cow position:chrX:30824200-30824001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):102, 60

               
               
               Conread position:510-725
               
               
               Cow position:chrX:32420426-32420214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):101, 80

               
               
               Conread position:510-763
               
               
               Cow position:chrX:29544671-29544911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:510-764
               
               
               Cow position:chrX:4278904-4279154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):33, 21

               
               
               Conread position:510-767
               
               
               Cow position:chrX:34238938-34238675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:510-769
               
               
               Cow position:chrX:4768943-4768699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):101, 58

               
               
               Conread position:511-680
               
               
               Cow position:chrX:25286508-25286676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 154

               
               
               Conread position:511-709
               
               
               Cow position:chrX:47079841-47079643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):99, 6

               
               
               Conread position:511-747
               
               
               Cow position:chrX:42836395-42836164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 79

               
               
               Conread position:511-764
               
               
               Cow position:chrX:48120992-48121236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):100, 9

               
               
               Conread position:511-769
               
               
               Cow position:chrX:34544000-34543738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:512-693
               
               
               Cow position:chrX:46982924-46983108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:512-694
               
               
               Cow position:chrX:47378917-47379090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 59

               
               
               Conread position:512-698
               
               
               Cow position:chrX:47755831-47756013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 69

               
               
               Conread position:512-769
               
               
               Cow position:chrX:23113505-23113234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:512-769
               
               
               Cow position:chrX:28877953-28878211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 217

               
               
               Conread position:512-772
               
               
               Cow position:chrX:23562086-23561816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):67, 231

               
               
               Conread position:513-693
               
               
               Cow position:chrX:36722601-36722773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):98, 55

               
               
               Conread position:513-722
               
               
               Cow position:chrX:21665024-21665238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:513-755
               
               
               Cow position:chrX:32318512-32318275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:513-761
               
               
               Cow position:chrX:12309173-12309420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 215

               
               
               Conread position:513-764
               
               
               Cow position:chrX:126968-126732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 40

               
               
               Conread position:513-772
               
               
               Cow position:chrX:15820818-15820552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):71, 17

               
               
               Conread position:515-703
               
               
               Cow position:chrX:15551823-15552009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:515-769
               
               
               Cow position:chrX:35543094-35542853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):97, 68

               
               
               Conread position:516-694
               
               
               Cow position:chrX:19795300-19795472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):131, 48

               
               
               Conread position:516-696
               
               
               Cow position:chrX:28850927-28850758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):95, 55

               
               
               Conread position:516-716
               
               
               Cow position:chrX:22822264-22822055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:516-725
               
               
               Cow position:chrX:6007884-6007675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 87

               
               
               Conread position:516-768
               
               
               Cow position:chrX:31294360-31294604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 211

               
               
               Conread position:517-725
               
               
               Cow position:chrX:46770754-46770963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):94, 89

               
               
               Conread position:517-764
               
               
               Cow position:chrX:41068928-41068684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):95, 63

               
               
               Conread position:517-769
               
               
               Cow position:chrX:47165676-47165926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 212

               
               
               Conread position:518-728
               
               
               Cow position:chrX:29318077-29317866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 50

               
               
               Conread position:518-769
               
               
               Cow position:chrX:27511628-27511385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:520-689
               
               
               Cow position:chrX:6878529-6878703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:520-693
               
               
               Cow position:chrX:26324854-26325026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:520-711
               
               
               Cow position:chrX:32186976-32186782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:520-714
               
               
               Cow position:chrX:35620910-35620715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:523-771
               
               
               Cow position:chrX:44660386-44660631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):88, 157

               
               
               Conread position:524-716
               
               
               Cow position:chrX:3651245-3651059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:524-729
               
               
               Cow position:chrX:11859335-11859541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):60, 119

               
               
               Conread position:525-764
               
               
               Cow position:chrX:40283323-40283089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 137

               
               
               Conread position:526-722
               
               
               Cow position:chrX:14275549-14275740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:526-727
               
               
               Cow position:chrX:24633893-24633682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:527-701
               
               
               Cow position:chrX:32235548-32235718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 63

               
               
               Conread position:527-763
               
               
               Cow position:chrX:169343-169581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):42, 151

               
               
               Conread position:528-771
               
               
               Cow position:chrX:47300416-47300658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 200

               
               
               Conread position:528-771
               
               
               Cow position:chrX:47302535-47302776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 200

               
               
               Conread position:529-725
               
               
               Cow position:chrX:27302073-27301870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:529-763
               
               
               Cow position:chrX:23188593-23188813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:531-687
               
               
               Cow position:chrX:29687981-29688137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 62

               
               
               Conread position:531-762
               
               
               Cow position:chrX:32604874-32605112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:532-761
               
               
               Cow position:chrX:34662653-34662881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):191, 211

               
               
               Conread position:532-764
               
               
               Cow position:chrX:34753981-34754226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 217

               
               
               Conread position:533-673
               
               
               Cow position:chrX:40543336-40543469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:533-764
               
               
               Cow position:chrX:18964633-18964862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:534-712
               
               
               Cow position:chrX:23098018-23098191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:534-721
               
               
               Cow position:chrX:29733391-29733588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:534-722
               
               
               Cow position:chrX:45968337-45968151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 46

               
               
               Conread position:534-769
               
               
               Cow position:chrX:31252599-31252376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:535-763
               
               
               Cow position:chrX:4515878-4515648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:535-764
               
               
               Cow position:chrX:28865814-28866042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 130

               
               
               Conread position:536-769
               
               
               Cow position:chrX:31626790-31627023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:538-722
               
               
               Cow position:chrX:4615822-4616007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:540-702
               
               
               Cow position:chrX:41081905-41082067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:541-763
               
               
               Cow position:chrX:16416687-16416472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:546-680
               
               
               Cow position:chrX:43143867-43143729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:546-695
               
               
               Cow position:chrX:23185370-23185516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):145, 69

               
               
               Conread position:546-758
               
               
               Cow position:chrX:24287754-24287960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:546-769
               
               
               Cow position:chrX:4043677-4043902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 128

               
               
               Conread position:547-764
               
               
               Cow position:chrX:6541547-6541773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:549-716
               
               
               Cow position:chrX:16575289-16575121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:549-724
               
               
               Cow position:chrX:38226933-38227106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):62, 70

               
               
               Conread position:551-722
               
               
               Cow position:chrX:36311745-36311573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 137

               
               
               Conread position:553-711
               
               
               Cow position:chrX:33204796-33204955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:554-714
               
               
               Cow position:chrX:36313835-36313995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:556-769
               
               
               Cow position:chrX:32977915-32978119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):7, 44

               
               
               Conread position:557-764
               
               
               Cow position:chrX:7710372-7710575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:557-764
               
               
               Cow position:chrX:11082450-11082661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:557-765
               
               
               Cow position:chrX:20697442-20697645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:558-761
               
               
               Cow position:chrX:3488723-3488925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 112

               
               
               Conread position:558-764
               
               
               Cow position:chrX:14599700-14599496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):56, 47

               
               
               Conread position:559-764
               
               
               Cow position:chrX:42235360-42235565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:559-768
               
               
               Cow position:chrX:29549387-29549588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):159, 22

               
               
               Conread position:559-769
               
               
               Cow position:chrX:33640142-33639931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:560-677
               
               
               Cow position:chrX:2742175-2742293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:560-695
               
               
               Cow position:chrX:11582389-11582253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 124

               
               
               Conread position:560-725
               
               
               Cow position:chrX:20801935-20801769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:560-728
               
               
               Cow position:chrX:12191926-12191758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:560-728
               
               
               Cow position:chrX:36848413-36848580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:560-751
               
               
               Cow position:chrX:23785814-23785624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 82

               
               
               Conread position:560-754
               
               
               Cow position:chrX:20743771-20743575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:560-760
               
               
               Cow position:chrX:37129435-37129234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 177

               
               
               Conread position:560-761
               
               
               Cow position:chrX:13382491-13382296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):52, 105

               
               
               Conread position:560-762
               
               
               Cow position:chrX:23562799-23562598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):13, 172

               
               
               Conread position:560-763
               
               
               Cow position:chrX:43730058-43730258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):52, 130

               
               
               Conread position:560-766
               
               
               Cow position:chrX:27119858-27119659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:560-769
               
               
               Cow position:chrX:616090-616304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:560-769
               
               
               Cow position:chrX:9365510-9365717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 170

               
               
               Conread position:560-769
               
               
               Cow position:chrX:11717615-11717830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:560-769
               
               
               Cow position:chrX:34402171-34401956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:561-696
               
               
               Cow position:chrX:11181030-11181167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:561-763
               
               
               Cow position:chrX:30543119-30543324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:561-769
               
               
               Cow position:chrX:42171137-42171338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:562-761
               
               
               Cow position:chrX:43116889-43116690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 166

               
               
               Conread position:562-769
               
               
               Cow position:chrX:6259986-6260190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:563-679
               
               
               Cow position:chrX:23187430-23187547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:563-697
               
               
               Cow position:chrX:23574816-23574683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 85

               
               
               Conread position:563-707
               
               
               Cow position:chrX:33151825-33151963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:563-728
               
               
               Cow position:chrX:18046557-18046398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:563-761
               
               
               Cow position:chrX:45883808-45884008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:564-695
               
               
               Cow position:chrX:23860831-23860964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:564-760
               
               
               Cow position:chrX:10393948-10394132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:564-764
               
               
               Cow position:chrX:17726138-17725937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 151

               
               
               Conread position:564-764
               
               
               Cow position:chrX:46433652-46433455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:565-701
               
               
               Cow position:chrX:40355192-40355059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:566-713
               
               
               Cow position:chrX:47342275-47342128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:566-764
               
               
               Cow position:chrX:8797409-8797216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):46, 104

               
               
               Conread position:566-768
               
               
               Cow position:chrX:29194392-29194192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:566-769
               
               
               Cow position:chrX:9416526-9416735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:566-769
               
               
               Cow position:chrX:32623730-32623525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 40

               
               
               Conread position:566-773
               
               
               Cow position:chrX:41884252-41884460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:567-769
               
               
               Cow position:chrX:878221-878425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:567-769
               
               
               Cow position:chrX:28134497-28134304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:568-762
               
               
               Cow position:chrX:23092027-23091832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:568-764
               
               
               Cow position:chrX:17888267-17888456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:569-701
               
               
               Cow position:chrX:27296363-27296504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:569-764
               
               
               Cow position:chrX:37836735-37836552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:569-769
               
               
               Cow position:chrX:6265442-6265641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:569-769
               
               
               Cow position:chrX:11317811-11318009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 159

               
               
               Conread position:569-781
               
               
               Cow position:chrX:29553441-29553231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:570-716
               
               
               Cow position:chrX:42506077-42506218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 88

               
               
               Conread position:570-727
               
               
               Cow position:chrX:6222971-6223134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:570-745
               
               
               Cow position:chrX:34278287-34278461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 152

               
               
               Conread position:570-761
               
               
               Cow position:chrX:47514479-47514669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 163

               
               
               Conread position:570-762
               
               
               Cow position:chrX:45113776-45113584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 20

               
               
               Conread position:570-769
               
               
               Cow position:chrX:38728890-38728696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 139

               
               
               Conread position:571-711
               
               
               Cow position:chrX:23266569-23266429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:571-769
               
               
               Cow position:chrX:19097065-19097264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:572-710
               
               
               Cow position:chrX:24343417-24343557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:574-749
               
               
               Cow position:chrX:42873537-42873368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:574-769
               
               
               Cow position:chrX:31312181-31311985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 166

               
               
               Conread position:575-758
               
               
               Cow position:chrX:5679421-5679599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:575-761
               
               
               Cow position:chrX:22914891-22915071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:576-764
               
               
               Cow position:chrX:29289728-29289542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 155

               
               
               Conread position:577-722
               
               
               Cow position:chrX:38725957-38725812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:579-773
               
               
               Cow position:chrX:3130718-3130527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:581-764
               
               
               Cow position:chrX:43426438-43426255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:582-706
               
               
               Cow position:chrX:10076115-10075992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:582-736
               
               
               Cow position:chrX:38722266-38722110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:582-764
               
               
               Cow position:chrX:19943092-19943274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:582-769
               
               
               Cow position:chrX:5900606-5900427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:582-769
               
               
               Cow position:chrX:36514749-36514936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:582-771
               
               
               Cow position:chrX:43527652-43527466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 137

               
               
               Conread position:583-762
               
               
               Cow position:chrX:11073049-11073228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 7

               
               
               Conread position:584-679
               
               
               Cow position:chrX:30831191-30831287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:585-758
               
               
               Cow position:chrX:10305210-10305379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:586-769
               
               
               Cow position:chrX:10959254-10959439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 144

               
               
               Conread position:586-772
               
               
               Cow position:chrX:17662458-17662638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 78

               
               
               Conread position:591-721
               
               
               Cow position:chrX:16830355-16830228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 89

               
               
               Conread position:592-729
               
               
               Cow position:chrX:19273573-19273711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:592-764
               
               
               Cow position:chrX:7806558-7806386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:592-764
               
               
               Cow position:chrX:47054391-47054564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:594-711
               
               
               Cow position:chrX:25788773-25788891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:594-764
               
               
               Cow position:chrX:10411852-10412023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 135

               
               
               Conread position:594-769
               
               
               Cow position:chrX:39558217-39558392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:594-772
               
               
               Cow position:chrX:48044384-48044558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:595-775
               
               
               Cow position:chrX:1514288-1514458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:596-765
               
               
               Cow position:chrX:19690345-19690180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 115

               
               
               Conread position:596-767
               
               
               Cow position:chrX:15815212-15815045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:596-769
               
               
               Cow position:chrX:7572037-7571861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:598-716
               
               
               Cow position:chrX:37665819-37665700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:598-761
               
               
               Cow position:chrX:37910574-37910408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:598-764
               
               
               Cow position:chrX:42498923-42499086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):132, 16

               
               
               Conread position:599-764
               
               
               Cow position:chrX:19162214-19162377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:599-769
               
               
               Cow position:chrX:29121175-29121004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:601-706
               
               
               Cow position:chrX:25211053-25210948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 72

               
               
               Conread position:601-769
               
               
               Cow position:chrX:22453973-22454140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 63

               
               
               Conread position:603-714
               
               
               Cow position:chrX:45149290-45149179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:603-725
               
               
               Cow position:chrX:46788306-46788428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:603-753
               
               
               Cow position:chrX:46788162-46788310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:603-754
               
               
               Cow position:chrX:48532292-48532143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:603-761
               
               
               Cow position:chrX:48397850-48398006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:603-764
               
               
               Cow position:chrX:26625548-26625713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:603-764
               
               
               Cow position:chrX:44954470-44954310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:603-764
               
               
               Cow position:chrX:45005746-45005586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:603-769
               
               
               Cow position:chrX:45403703-45403869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:603-770
               
               
               Cow position:chrX:44238787-44238952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:603-770
               
               
               Cow position:chrX:44660754-44660918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:603-771
               
               
               Cow position:chrX:44063502-44063666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:603-771
               
               
               Cow position:chrX:44660610-44660775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:603-771
               
               
               Cow position:chrX:45089713-45089547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:603-771
               
               
               Cow position:chrX:47013569-47013733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 116

               
               
               Conread position:603-771
               
               
               Cow position:chrX:47300637-47300802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:603-771
               
               
               Cow position:chrX:48652455-48652620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:603-774
               
               
               Cow position:chrX:45064814-45064984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):163, 139

               
               
               Conread position:605-763
               
               
               Cow position:chrX:21004804-21004645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:605-769
               
               
               Cow position:chrX:11856551-11856386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:605-771
               
               
               Cow position:chrX:47750172-47750335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:609-763
               
               
               Cow position:chrX:38936816-38936661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 74

               
               
               Conread position:610-710
               
               
               Cow position:chrX:6213985-6213885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:616-769
               
               
               Cow position:chrX:27680507-27680353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:621-769
               
               
               Cow position:chrX:27685353-27685206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 110

               
               
               Conread position:625-769
               
               
               Cow position:chrX:45993330-45993181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 110

               
               
               Conread position:635-757
               
               
               Cow position:chrX:12405291-12405413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:636-764
               
               
               Cow position:chrX:1572050-1572174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:636-764
               
               
               Cow position:chrX:43973634-43973507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 0
Show alignments to all cow chromosomes.