Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8041J02.5 | 
| Conread position: | 1-209 | 
| Cow position: | chr6:48493990-48493782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 439-597 | 
| Cow position: | chr6:48491131-48490973 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 594-753 | 
| Cow position: | chr6:48489836-48489677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 752-898 | 
| Cow position: | chr6:48489297-48489151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 896-1033 | 
| Cow position: | chr6:48486800-48486663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 1033-1215 | 
| Cow position: | chr6:48484110-48483925 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 128, 0 | 
| Conread position: | 1214-1344 | 
| Cow position: | chr6:48482991-48482861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 1338-1473 | 
| Cow position: | chr6:48481756-48481621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 1476-1550 | 
| Cow position: | chr6:48481277-48481203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 75 | 
| Alignm identity: | 70 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 1548-2299 | 
| Cow position: | chr6:48476594-48475878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 752 | 
| Alignm identity: | 640 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 2292-2684 | 
| Cow position: | chr6:48475845-48475452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 51 | 
Show alignments to all cow chromosomes.
