Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042B01.3 |
| Conread position: | 1-268 |
| Cow position: | chr17:22451929-22451662 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-322 |
| Cow position: | chr17:22498859-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 105, 116 |
| Conread position: | 1-501 |
| Cow position: | chr17:22551980-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 102 |
| Conread position: | 1-502 |
| Cow position: | chr17:22473450-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 112 |
| Conread position: | 1-509 |
| Cow position: | chr17:22452181-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 124 |
| Conread position: | 1-512 |
| Cow position: | chr17:22589986-22589475 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 103 |
| Conread position: | 1-514 |
| Cow position: | chr17:22452349-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 1-515 |
| Cow position: | chr17:22552820-22552306 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 1-532 |
| Cow position: | chr17:22473201-22473729 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 62 |
| Conread position: | 1-547 |
| Cow position: | chr17:22499279-22498734 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 0 |
| Conread position: | 1-551 |
| Cow position: | chr17:22553072-22552522 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 439, 432 |
| Conread position: | 1-553 |
| Cow position: | chr17:22473366-22473918 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 1-553 |
| Cow position: | chr17:22499027-22498484 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 110, 98 |
| Conread position: | 1-553 |
| Cow position: | chr17:22499111-22498559 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 347 |
| Conread position: | 1-557 |
| Cow position: | chr17:22552232-22551674 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 103 |
| Conread position: | 1-557 |
| Cow position: | chr17:22552484-22551926 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 196 |
| Conread position: | 1-557 |
| Cow position: | chr17:22589818-22589260 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 118 |
| Conread position: | 1-563 |
| Cow position: | chr17:22499363-22498799 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 347 |
| Conread position: | 1-565 |
| Cow position: | chr17:22473282-22473849 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 347 |
| Conread position: | 1-565 |
| Cow position: | chr17:22552652-22552085 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 1-566 |
| Cow position: | chr17:22552904-22552336 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 1-570 |
| Cow position: | chr17:22552148-22551576 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 4-560 |
| Cow position: | chr17:22552733-22552175 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 110 |
| Conread position: | 9-566 |
| Cow position: | chr17:22552388-22551833 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 9 |
| Conread position: | 19-560 |
| Cow position: | chr17:22590304-22589761 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 94 |
| Conread position: | 25-532 |
| Cow position: | chr17:22452241-22451734 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 262 |
| Conread position: | 25-557 |
| Cow position: | chr17:22590046-22589512 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 27-566 |
| Cow position: | chr17:22552543-22552001 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 174 |
| Conread position: | 31-554 |
| Cow position: | chr17:22473066-22473583 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 318 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 105, 81 |
| Conread position: | 33-553 |
| Cow position: | chr17:22589702-22589184 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 86 |
| Conread position: | 33-566 |
| Cow position: | chr17:22552284-22551748 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 494, 511 |
| Conread position: | 34-250 |
| Cow position: | chr17:22551695-22551479 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 34-478 |
| Cow position: | chr17:22589617-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 34-525 |
| Cow position: | chr17:22552031-22551540 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 85 |
| Conread position: | 34-551 |
| Cow position: | chr17:22452400-22451883 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 85 |
| Conread position: | 34-560 |
| Cow position: | chr17:22590205-22589680 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 34-565 |
| Cow position: | chr17:22552955-22552422 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 85 |
| Conread position: | 35-556 |
| Cow position: | chr17:22553122-22552599 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 506, 0 |
| Conread position: | 50-542 |
| Cow position: | chr17:22499398-22498906 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 301 |
| Conread position: | 55-553 |
| Cow position: | chr17:22473174-22473666 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 27 |
| Conread position: | 218-560 |
| Cow position: | chr17:22499398-22499057 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 337, 0 |
Show alignments to all cow chromosomes.