Cow genome map

Conread name: Ss1.1-Pig4-TMW8042B01.3

Conread position: 1-229
Cow position:
Alignm length: 230
Alignm identity: 151
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 106, 118

Conread position: 1-321
Cow position:
Alignm length: 322
Alignm identity: 205
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 5, 0

Conread position: 1-348
Cow position:
Alignm length: 353
Alignm identity: 240
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 97, 112

Conread position: 1-391
Cow position:
Alignm length: 394
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 29

Conread position: 1-396
Cow position:
Alignm length: 398
Alignm identity: 256
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 16, 24

Conread position: 1-410
Cow position:
Alignm length: 411
Alignm identity: 258
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 180, 191

Conread position: 1-476
Cow position:
Alignm length: 477
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 112

Conread position: 1-512
Cow position:
Alignm length: 515
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 34

Conread position: 1-512
Cow position:
Alignm length: 513
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 95

Conread position: 1-514
Cow position:
Alignm length: 514
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-514
Cow position:
Alignm length: 516
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 23

Conread position: 1-515
Cow position:
Alignm length: 518
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 120

Conread position: 1-516
Cow position:
Alignm length: 520
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 174

Conread position: 1-517
Cow position:
Alignm length: 520
Alignm identity: 327
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 5, 44

Conread position: 1-542
Cow position:
Alignm length: 544
Alignm identity: 325
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 110, 98

Conread position: 1-542
Cow position:
Alignm length: 545
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 107

Conread position: 1-542
Cow position:
Alignm length: 544
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 105

Conread position: 1-542
Cow position:
Alignm length: 543
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 532, 526

Conread position: 1-542
Cow position:
Alignm length: 544
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 15

Conread position: 1-547
Cow position:
Alignm length: 552
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 98

Conread position: 1-551
Cow position:
Alignm length: 554
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 106

Conread position: 1-551
Cow position:
Alignm length: 552
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 21

Conread position: 1-553
Cow position:
Alignm length: 556
Alignm identity: 346
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 100, 63

Conread position: 1-553
Cow position:
Alignm length: 558
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 21

Conread position: 1-554
Cow position:
Alignm length: 557
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 96

Conread position: 1-557
Cow position:
Alignm length: 559
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 540, 0

Conread position: 1-559
Cow position:
Alignm length: 563
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 112

Conread position: 1-560
Cow position:
Alignm length: 564
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 98

Conread position: 1-560
Cow position:
Alignm length: 567
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 179

Conread position: 1-561
Cow position:
Alignm length: 565
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 95

Conread position: 1-562
Cow position:
Alignm length: 568
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 103

Conread position: 1-564
Cow position:
Alignm length: 566
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 543, 0

Conread position: 1-565
Cow position:
Alignm length: 569
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 102

Conread position: 1-565
Cow position:
Alignm length: 572
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 180

Conread position: 1-566
Cow position:
Alignm length: 569
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 110

Conread position: 1-566
Cow position:
Alignm length: 570
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 191

Conread position: 1-566
Cow position:
Alignm length: 572
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 24

Conread position: 1-566
Cow position:
Alignm length: 573
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 112

Conread position: 1-566
Cow position:
Alignm length: 572
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 102

Conread position: 1-570
Cow position:
Alignm length: 575
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 277

Conread position: 1-585
Cow position:
Alignm length: 589
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 28

Conread position: 2-515
Cow position:
Alignm length: 519
Alignm identity: 325
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 105, 45

Conread position: 2-569
Cow position:
Alignm length: 574
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 21

Conread position: 5-269
Cow position:
Alignm length: 266
Alignm identity: 167
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 101, 119

Conread position: 5-592
Cow position:
Alignm length: 593
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 550, 0

Conread position: 5-607
Cow position:
Alignm length: 610
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 108

Conread position: 6-567
Cow position:
Alignm length: 566
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 531, 274

Conread position: 7-353
Cow position:
Alignm length: 349
Alignm identity: 225
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 100, 110

Conread position: 7-524
Cow position:
Alignm length: 520
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 103

Conread position: 17-507
Cow position:
Alignm length: 493
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 247

Conread position: 21-512
Cow position:
Alignm length: 497
Alignm identity: 301
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 173, 51

Conread position: 21-553
Cow position:
Alignm length: 533
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 24-551
Cow position:
Alignm length: 530
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 89

Conread position: 25-565
Cow position:
Alignm length: 544
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 516, 112

Conread position: 31-559
Cow position:
Alignm length: 535
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 16

Conread position: 33-525
Cow position:
Alignm length: 494
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 68

Conread position: 34-576
Cow position:
Alignm length: 546
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 510, 0

Conread position: 37-474
Cow position:
Alignm length: 440
Alignm identity: 282
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 72, 67

Conread position: 37-551
Cow position:
Alignm length: 516
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 76

Conread position: 40-515
Cow position:
Alignm length: 477
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 77

Conread position: 47-560
Cow position:
Alignm length: 517
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 195

Conread position: 54-552
Cow position:
Alignm length: 500
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 229

Conread position: 97-570
Cow position:
Alignm length: 477
Alignm identity: 288
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 338, 207

Conread position: 112-489
Cow position:
Alignm length: 379
Alignm identity: 241
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 75, 21

Conread position: 117-569
Cow position:
Alignm length: 457
Alignm identity: 280
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 68, 77

Conread position: 121-516
Cow position:
Alignm length: 398
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 72

Conread position: 123-568
Cow position:
Alignm length: 448
Alignm identity: 277
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 430, 75

Conread position: 136-514
Cow position:
Alignm length: 380
Alignm identity: 238
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 300, 310

Conread position: 138-576
Cow position:
Alignm length: 443
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 225

Conread position: 207-553
Cow position:
Alignm length: 347
Alignm identity: 222
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 117, 0

Conread position: 208-532
Cow position:
Alignm length: 326
Alignm identity: 217
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 91, 87

Conread position: 220-553
Cow position:
Alignm length: 334
Alignm identity: 218
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 247-514
Cow position:
Alignm length: 268
Alignm identity: 181
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.