Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042B01.3 |
| Conread position: | 1-229 |
| Cow position: | chr19:14959047-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 106, 118 |
| Conread position: | 1-321 |
| Cow position: | chr19:23597397-23597718 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-348 |
| Cow position: | chr19:20635348-20635001 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 97, 112 |
| Conread position: | 1-391 |
| Cow position: | chr19:14948433-14948044 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 1-396 |
| Cow position: | chr19:23650091-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 1-410 |
| Cow position: | chr19:20635432-20635023 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 180, 191 |
| Conread position: | 1-476 |
| Cow position: | chr19:23597230-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 112 |
| Conread position: | 1-512 |
| Cow position: | chr19:20678152-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 1-512 |
| Cow position: | chr19:20678236-20678744 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 95 |
| Conread position: | 1-514 |
| Cow position: | chr19:23613549-23614062 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-514 |
| Cow position: | chr19:23649923-23650436 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 1-515 |
| Cow position: | chr19:14960274-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 120 |
| Conread position: | 1-516 |
| Cow position: | chr19:20635600-20635085 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 174 |
| Conread position: | 1-517 |
| Cow position: | chr19:14959857-14959356 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 327 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 5, 44 |
| Conread position: | 1-542 |
| Cow position: | chr19:14959536-14959010 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 110, 98 |
| Conread position: | 1-542 |
| Cow position: | chr19:14960358-14959819 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 107 |
| Conread position: | 1-542 |
| Cow position: | chr19:23597062-23597603 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 105 |
| Conread position: | 1-542 |
| Cow position: | chr19:23613801-23614342 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 532, 526 |
| Conread position: | 1-542 |
| Cow position: | chr19:23649419-23649960 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 15 |
| Conread position: | 1-547 |
| Cow position: | chr19:20678068-20678611 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 98 |
| Conread position: | 1-551 |
| Cow position: | chr19:14940273-14940823 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 106 |
| Conread position: | 1-551 |
| Cow position: | chr19:23649503-23650053 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 1-553 |
| Cow position: | chr19:14959368-14958831 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 346 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 100, 63 |
| Conread position: | 1-553 |
| Cow position: | chr19:23649587-23650139 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 1-554 |
| Cow position: | chr19:23614221-23614774 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 96 |
| Conread position: | 1-557 |
| Cow position: | chr19:14940021-14940579 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 0 |
| Conread position: | 1-559 |
| Cow position: | chr19:23613717-23614276 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 112 |
| Conread position: | 1-560 |
| Cow position: | chr19:20677480-20678040 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 98 |
| Conread position: | 1-560 |
| Cow position: | chr19:23613969-23614530 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 179 |
| Conread position: | 1-561 |
| Cow position: | chr19:23614557-23615119 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 95 |
| Conread position: | 1-562 |
| Cow position: | chr19:14940525-14941087 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 103 |
| Conread position: | 1-564 |
| Cow position: | chr19:23649839-23650404 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 543, 0 |
| Conread position: | 1-565 |
| Cow position: | chr19:14940189-14940756 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 102 |
| Conread position: | 1-565 |
| Cow position: | chr19:20677396-20677963 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 180 |
| Conread position: | 1-566 |
| Cow position: | chr19:14940441-14941008 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 110 |
| Conread position: | 1-566 |
| Cow position: | chr19:20677732-20678299 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 191 |
| Conread position: | 1-566 |
| Cow position: | chr19:20677984-20678552 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 1-566 |
| Cow position: | chr19:23613381-23613949 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 112 |
| Conread position: | 1-566 |
| Cow position: | chr19:23613633-23614200 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 102 |
| Conread position: | 1-570 |
| Cow position: | chr19:23649671-23650243 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 277 |
| Conread position: | 1-585 |
| Cow position: | chr19:43570272-43569690 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 28 |
| Conread position: | 2-515 |
| Cow position: | chr19:20677316-20677826 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 325 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 105, 45 |
| Conread position: | 2-569 |
| Cow position: | chr19:23614306-23614875 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 5-269 |
| Cow position: | chr19:14948262-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 101, 119 |
| Conread position: | 5-592 |
| Cow position: | chr19:14940361-14940953 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 550, 0 |
| Conread position: | 5-607 |
| Cow position: | chr19:23649759-23650363 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 108 |
| Conread position: | 6-567 |
| Cow position: | chr19:14960437-14959875 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 531, 274 |
| Conread position: | 7-353 |
| Cow position: | chr19:14948344-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 100, 110 |
| Conread position: | 7-524 |
| Cow position: | chr19:23613471-23613988 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 103 |
| Conread position: | 17-507 |
| Cow position: | chr19:14959604-14959123 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 247 |
| Conread position: | 21-512 |
| Cow position: | chr19:14915851-14916335 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 301 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 173, 51 |
| Conread position: | 21-553 |
| Cow position: | chr19:23613906-23614437 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 24-551 |
| Cow position: | chr19:23614412-23614939 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 89 |
| Conread position: | 25-565 |
| Cow position: | chr19:23596921-23597461 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 516, 112 |
| Conread position: | 31-559 |
| Cow position: | chr19:23597176-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 33-525 |
| Cow position: | chr19:14940137-14940629 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 34-576 |
| Cow position: | chr19:23614086-23614631 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 510, 0 |
| Conread position: | 37-474 |
| Cow position: | chr19:14959257-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 72, 67 |
| Conread position: | 37-551 |
| Cow position: | chr19:14939973-14940487 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 40-515 |
| Cow position: | chr19:20635645-20635170 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 47-560 |
| Cow position: | chr19:23649297-23649809 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 195 |
| Conread position: | 54-552 |
| Cow position: | chr19:23649388-23649886 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 229 |
| Conread position: | 97-570 |
| Cow position: | chr19:23596825-23597297 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 338, 207 |
| Conread position: | 112-489 |
| Cow position: | chr19:14959675-14959300 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 117-569 |
| Cow position: | chr19:23649283-23649737 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 121-516 |
| Cow position: | chr19:20635648-20635253 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 123-568 |
| Cow position: | chr19:14948479-14948033 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 430, 75 |
| Conread position: | 136-514 |
| Cow position: | chr19:14960475-14960099 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 300, 310 |
| Conread position: | 138-576 |
| Cow position: | chr19:23613350-23613791 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 225 |
| Conread position: | 207-553 |
| Cow position: | chr19:43570395-43570059 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 208-532 |
| Cow position: | chr19:20635645-20635321 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 91, 87 |
| Conread position: | 220-553 |
| Cow position: | chr19:14939988-14940321 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 247-514 |
| Cow position: | chr19:14960448-14960181 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.