Cow genome map

Conread name: Ss1.1-Pig4-TMW8042B01.3

Conread position: 1-229
Cow position: chr22:12475518-12475290 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 97, 107

Conread position: 1-229
Cow position: chr22:12499741-12499969 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 150
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 184, 192

Conread position: 1-344
Cow position: chr22:12418828-12418485 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 223
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 22

Conread position: 1-354
Cow position: chr22:12418912-12418559 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 224
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 108, 98

Conread position: 1-477
Cow position: chr22:12385383-12384907 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-479
Cow position: chr22:12475770-12475292 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-479
Cow position: chr22:12499489-12499967 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-481
Cow position: chr22:14442243-14442720 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 285
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 13, 21

Conread position: 1-513
Cow position: chr22:12399891-12399385 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 51

Conread position: 1-514
Cow position: chr22:12431709-12431196 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 265

Conread position: 1-514
Cow position: chr22:12432381-12431868 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 113

Conread position: 1-515
Cow position: chr22:14430181-14430695 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 318
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 34, 17

Conread position: 1-517
Cow position: chr22:14429929-14430445 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 103

Conread position: 1-519
Cow position: chr22:14468006-14468524 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 321
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 107, 95

Conread position: 1-542
Cow position: chr22:12458325-12457784 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 98

Conread position: 1-542
Cow position: chr22:12458577-12458036 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-542
Cow position: chr22:12476358-12475817 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 118

Conread position: 1-547
Cow position: chr22:46654296-46654842 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 336
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 101, 96

Conread position: 1-551
Cow position: chr22:12399561-12399011 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 191

Conread position: 1-551
Cow position: chr22:12431121-12430571 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 380

Conread position: 1-551
Cow position: chr22:12475854-12475304 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 116

Conread position: 1-553
Cow position: chr22:11640721-11641273 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 125

Conread position: 1-553
Cow position: chr22:12476106-12475554 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 453, 428

Conread position: 1-553
Cow position: chr22:12499153-12499705 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 94

Conread position: 1-553
Cow position: chr22:12499405-12499957 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 116

Conread position: 1-553
Cow position: chr22:46654128-46654680 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 96

Conread position: 1-554
Cow position: chr22:12399309-12398756 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 437, 428

Conread position: 1-558
Cow position: chr22:14441991-14442548 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 341
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 264, 269

Conread position: 1-560
Cow position: chr22:11640889-11641448 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 113

Conread position: 1-560
Cow position: chr22:12458493-12457932 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 443, 432

Conread position: 1-570
Cow position: chr22:12399729-12399158 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 97

Conread position: 1-571
Cow position: chr22:14429845-14430417 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 99

Conread position: 2-553
Cow position: chr22:14429513-14430059 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 99

Conread position: 5-560
Cow position: chr22:12399641-12399084 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 187

Conread position: 5-566
Cow position: chr22:12476270-12475707 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 30

Conread position: 5-566
Cow position: chr22:12498989-12499552 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 30

Conread position: 6-427
Cow position: chr22:11666483-11666904 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 262
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 191, 180

Conread position: 6-514
Cow position: chr22:11701137-11701645 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 317
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 191, 184

Conread position: 7-542
Cow position: chr22:11640643-11641178 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 44

Conread position: 17-318
Cow position: chr22:11641157-11641458 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 193
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 16, 6

Conread position: 17-542
Cow position: chr22:12498917-12499442 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 97

Conread position: 19-553
Cow position: chr22:12399459-12398925 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 98

Conread position: 19-554
Cow position: chr22:12385535-12384998 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 90

Conread position: 19-554
Cow position: chr22:12431775-12431240 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 98

Conread position: 19-597
Cow position: chr22:12385619-12385034 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 111

Conread position: 22-566
Cow position: chr22:12498840-12499384 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 9

Conread position: 24-227
Cow position: chr22:12457966-12457763 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 139
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 24-512
Cow position: chr22:12432442-12431954 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 267

Conread position: 24-542
Cow position: chr22:12475915-12475397 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-542
Cow position: chr22:12499344-12499862 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-564
Cow position: chr22:12476167-12475625 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 520, 0

Conread position: 24-564
Cow position: chr22:12499092-12499634 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 412

Conread position: 25-480
Cow position: chr22:12399201-12398746 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 418, 425

Conread position: 25-514
Cow position: chr22:12432105-12431616 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 25-518
Cow position: chr22:12475998-12475505 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 25-521
Cow position: chr22:12431265-12430769 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 25-524
Cow position: chr22:12499261-12499760 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 25-554
Cow position: chr22:12431517-12430988 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 101

Conread position: 25-571
Cow position: chr22:12458385-12457837 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 336

Conread position: 30-566
Cow position: chr22:12399364-12398826 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 511, 0

Conread position: 31-542
Cow position: chr22:12385439-12384926 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 84

Conread position: 32-512
Cow position: chr22:14430548-14431021 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 286
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 333, 316

Conread position: 34-397
Cow position: chr22:12458124-12457761 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 237
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 34-482
Cow position: chr22:11641006-11641454 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 296
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 75, 63

Conread position: 34-512
Cow position: chr22:12385688-12385208 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 18

Conread position: 34-512
Cow position: chr22:46654077-46654555 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 66

Conread position: 34-514
Cow position: chr22:12432180-12431700 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 297
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 155, 175

Conread position: 34-518
Cow position: chr22:12431592-12431108 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 298
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 248, 253

Conread position: 34-542
Cow position: chr22:12418963-12418455 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 307
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 34-551
Cow position: chr22:12431172-12430655 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 34-553
Cow position: chr22:12431340-12430821 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 34-553
Cow position: chr22:14468123-14468640 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 324
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 71, 83

Conread position: 34-566
Cow position: chr22:12431844-12431310 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 395

Conread position: 34-566
Cow position: chr22:12476409-12475875 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 521, 0

Conread position: 34-566
Cow position: chr22:14467955-14468489 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 85

Conread position: 35-566
Cow position: chr22:12458627-12458094 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 504, 499

Conread position: 39-638
Cow position: chr22:12431421-12430819 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 233

Conread position: 40-326
Cow position: chr22:14430640-14430926 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 188
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 138, 153

Conread position: 45-514
Cow position: chr22:46654256-46654725 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 296
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 62, 55

Conread position: 45-557
Cow position: chr22:46654004-46654518 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 53

Conread position: 46-514
Cow position: chr22:12431916-12431448 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 128

Conread position: 52-514
Cow position: chr22:12432498-12432036 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 61

Conread position: 58-558
Cow position: chr22:12419023-12418523 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 302
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 69-553
Cow position: chr22:12399907-12399429 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 67

Conread position: 70-570
Cow position: chr22:11640622-11641124 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 324
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 37, 30

Conread position: 123-353
Cow position: chr22:12419311-12419081 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 125, 119

Conread position: 123-514
Cow position: chr22:11666516-11666907 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 243
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 57, 74

Conread position: 134-340
Cow position: chr22:12545642-12545848 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 141
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 142, 116

Conread position: 153-521
Cow position: chr22:11666462-11666830 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 225
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 111, 125

Conread position: 178-565
Cow position: chr22:12385712-12385320 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 252
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 180, 159

Conread position: 199-542
Cow position: chr22:12476412-12476069 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 218
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 201-566
Cow position: chr22:14467954-14468321 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 232
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 68, 83

Conread position: 211-564
Cow position: chr22:46654002-46654357 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 227
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 75, 55

Show alignments to all cow chromosomes.