Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042B01.3 |
| Conread position: | 1-216 |
| Cow position: | chr23:25723928-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 154, 142 |
| Conread position: | 1-256 |
| Cow position: | chr23:24639835-24640090 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 112 |
| Conread position: | 1-324 |
| Cow position: | chr23:24639752-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 110, 6 |
| Conread position: | 1-362 |
| Cow position: | chr23:24639667-24640028 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-363 |
| Cow position: | chr23:25724097-25723734 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 1-396 |
| Cow position: | chr23:25626646-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 99 |
| Conread position: | 1-411 |
| Cow position: | chr23:24626339-24626747 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 103 |
| Conread position: | 1-435 |
| Cow position: | chr23:25660265-25660700 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-483 |
| Cow position: | chr23:24560607-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-514 |
| Cow position: | chr23:24535930-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 484, 0 |
| Conread position: | 1-514 |
| Cow position: | chr23:24536014-24535501 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 102 |
| Conread position: | 1-515 |
| Cow position: | chr23:25660183-25660696 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 9 |
| Conread position: | 1-542 |
| Cow position: | chr23:25626481-25627019 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 54 |
| Conread position: | 1-550 |
| Cow position: | chr23:25698625-25698077 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 339 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 1-552 |
| Cow position: | chr23:24547215-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 350 |
| Conread position: | 1-553 |
| Cow position: | chr23:25626229-25626778 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 1-554 |
| Cow position: | chr23:24560691-24560138 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-564 |
| Cow position: | chr23:24522786-24522224 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 99 |
| Conread position: | 1-566 |
| Cow position: | chr23:24522453-24521884 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 357 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 110, 98 |
| Conread position: | 1-576 |
| Cow position: | chr23:24560775-24560197 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 546, 542 |
| Conread position: | 3-570 |
| Cow position: | chr23:25626063-25626630 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 110 |
| Conread position: | 7-322 |
| Cow position: | chr23:24654070-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 7-515 |
| Cow position: | chr23:24522696-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 7-551 |
| Cow position: | chr23:25626403-25626944 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 124 |
| Conread position: | 17-553 |
| Cow position: | chr23:24560843-24560307 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 105 |
| Conread position: | 19-260 |
| Cow position: | chr23:24546861-24546621 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 24-552 |
| Cow position: | chr23:25626000-25626528 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-564 |
| Cow position: | chr23:24639438-24639980 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 170 |
| Conread position: | 25-483 |
| Cow position: | chr23:25626586-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 172 |
| Conread position: | 25-492 |
| Cow position: | chr23:24639607-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 79 |
| Conread position: | 25-551 |
| Cow position: | chr23:24547275-24546749 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 25-553 |
| Cow position: | chr23:24639523-24640051 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 401 |
| Conread position: | 34-542 |
| Cow position: | chr23:25723979-25723474 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 318 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 287, 266 |
| Conread position: | 34-554 |
| Cow position: | chr23:24639280-24639800 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 79 |
| Conread position: | 41-553 |
| Cow position: | chr23:24560903-24560391 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 58 |
| Conread position: | 48-498 |
| Cow position: | chr23:24626302-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 0 |
| Conread position: | 48-512 |
| Cow position: | chr23:25660145-25660610 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 48-569 |
| Cow position: | chr23:24536051-24535527 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 54-564 |
| Cow position: | chr23:24547330-24546818 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 69-388 |
| Cow position: | chr23:24654048-24654367 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 70-513 |
| Cow position: | chr23:24639232-24639675 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-490 |
| Cow position: | chr23:25724107-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 278 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 119-571 |
| Cow position: | chr23:25698677-25698221 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 298 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 34, 73 |
| Conread position: | 134-525 |
| Cow position: | chr23:25660147-25660538 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 295 |
| Conread position: | 134-558 |
| Cow position: | chr23:24626304-24626728 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 138-551 |
| Cow position: | chr23:25660068-25660480 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 138-553 |
| Cow position: | chr23:24560890-24560475 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 142-552 |
| Cow position: | chr23:24522812-24522406 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 267 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 147-516 |
| Cow position: | chr23:24654042-24654413 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 286, 292 |
| Conread position: | 150-553 |
| Cow position: | chr23:25625958-25626361 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 154-542 |
| Cow position: | chr23:25724111-25723723 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 282, 292 |
| Conread position: | 158-571 |
| Cow position: | chr23:24639236-24639651 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 145, 153 |
| Conread position: | 192-515 |
| Cow position: | chr23:25698686-25698363 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 77 |
| Conread position: | 193-540 |
| Cow position: | chr23:24626279-24626626 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 238-576 |
| Cow position: | chr23:24639232-24639573 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 301-558 |
| Cow position: | chr23:24626303-24626560 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 22 |
Show alignments to all cow chromosomes.