Cow genome map

Conread name: Ss1.1-Pig4-TMW8042B01.3

Conread position: 1-228
Cow position: chr25:34769422-34769195 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 101, 112

Conread position: 1-248
Cow position: chr25:34732074-34731827 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 162
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 83, 95

Conread position: 1-300
Cow position: chr25:366756-367054 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 199
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 87, 6

Conread position: 1-312
Cow position: chr25:33145128-33145439 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 13, 21

Conread position: 1-325
Cow position: chr25:346479-346802 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 208
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 87, 6

Conread position: 1-341
Cow position: chr25:414744-414411 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 220
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 289, 9

Conread position: 1-353
Cow position: chr25:22235944-22236295 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 216
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 15

Conread position: 1-395
Cow position: chr25:36801573-36801967 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 248
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 104, 125

Conread position: 1-396
Cow position: chr25:34433635-34434027 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 244
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 110, 103

Conread position: 1-409
Cow position: chr25:33127832-33128240 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 254
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 1-476
Cow position: chr25:33127748-33128223 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-512
Cow position: chr25:34447220-34447729 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 103

Conread position: 1-513
Cow position: chr25:33298593-33299105 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 26

Conread position: 1-513
Cow position: chr25:36801249-36801749 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 321
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 11

Conread position: 1-542
Cow position: chr25:23420329-23420870 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 194

Conread position: 1-547
Cow position: chr25:34769842-34769297 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 193

Conread position: 1-551
Cow position: chr25:34769758-34769208 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 520, 516

Conread position: 1-552
Cow position: chr25:33306432-33305887 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 344
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 345, 95

Conread position: 1-553
Cow position: chr25:33144879-33145428 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 133

Conread position: 1-553
Cow position: chr25:34447304-34447847 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 116

Conread position: 1-553
Cow position: chr25:36800745-36801297 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 353

Conread position: 1-557
Cow position: chr25:34769926-34769368 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 540, 0

Conread position: 1-564
Cow position: chr25:33299181-33299746 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 29

Conread position: 1-570
Cow position: chr25:34447052-34447623 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 438, 424

Conread position: 1-571
Cow position: chr25:34770010-34769438 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 103

Conread position: 1-575
Cow position: chr25:33298929-33299506 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 552, 0

Conread position: 1-576
Cow position: chr25:33157359-33156782 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 103

Conread position: 1-580
Cow position: chr25:33298845-33299429 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 102

Conread position: 2-570
Cow position: chr25:36800494-36801064 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 8

Conread position: 3-539
Cow position: chr25:34713898-34714434 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 325
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 437, 444

Conread position: 3-569
Cow position: chr25:36800579-36801148 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 48

Conread position: 4-515
Cow position: chr25:34713983-34714494 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 306
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 42, 26

Conread position: 4-541
Cow position: chr25:34447139-34447676 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-509
Cow position: chr25:33299353-33299853 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 317
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 104, 95

Conread position: 5-570
Cow position: chr25:34770090-34769523 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 550, 0

Conread position: 6-542
Cow position: chr25:34762864-34763397 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 313
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 236, 276

Conread position: 7-425
Cow position: chr25:34714154-34714568 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 266
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 114, 121

Conread position: 7-515
Cow position: chr25:34433725-34434218 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 313
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 34

Conread position: 7-566
Cow position: chr25:34446974-34447535 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 530, 520

Conread position: 17-351
Cow position: chr25:18642209-18641872 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 221
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 135, 183

Conread position: 17-515
Cow position: chr25:34433487-34433978 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 300
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 90, 9

Conread position: 18-553
Cow position: chr25:33157426-33156891 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 174

Conread position: 19-344
Cow position: chr25:33305271-33304949 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 211
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 99, 84

Conread position: 19-542
Cow position: chr25:36801183-36801694 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 313
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 91, 85

Conread position: 19-557
Cow position: chr25:36801423-36801961 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 180

Conread position: 19-566
Cow position: chr25:33299115-33299664 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 85

Conread position: 19-604
Cow position: chr25:33305999-33305415 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 369
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 51

Conread position: 24-263
Cow position: chr25:346585-346824 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 56

Conread position: 24-525
Cow position: chr25:34732555-34732054 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 295
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 329, 336

Conread position: 25-227
Cow position: chr25:327060-327263 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 174

Conread position: 25-575
Cow position: chr25:33298785-33299338 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 245

Conread position: 30-577
Cow position: chr25:33305425-33304882 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 21

Conread position: 33-503
Cow position: chr25:326643-327119 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 295
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 65, 49

Conread position: 33-556
Cow position: chr25:326727-327258 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 318
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 75

Conread position: 33-564
Cow position: chr25:33298541-33299074 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 34-313
Cow position: chr25:326986-327265 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 180
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 61

Conread position: 34-479
Cow position: chr25:22235892-22236337 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 270
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 55, 63

Conread position: 34-506
Cow position: chr25:36800694-36801166 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 34-554
Cow position: chr25:34763225-34763742 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 309
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 231, 248

Conread position: 34-557
Cow position: chr25:33299298-33299821 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 69

Conread position: 34-564
Cow position: chr25:33298710-33299242 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 327

Conread position: 45-553
Cow position: chr25:33127708-33128216 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 158

Conread position: 48-537
Cow position: chr25:34732615-34732127 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 302
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 40, 47

Conread position: 51-542
Cow position: chr25:34446934-34447425 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 308
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 55, 62

Conread position: 55-259
Cow position: chr25:34433020-34433224 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 63, 49

Conread position: 55-553
Cow position: chr25:33298479-33298977 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 80

Conread position: 55-560
Cow position: chr25:36800463-36800970 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 315
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 32

Conread position: 77-389
Cow position: chr25:346470-346782 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 192
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 203, 210

Conread position: 77-553
Cow position: chr25:23420321-23420797 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 27

Conread position: 108-553
Cow position: chr25:34446907-34447352 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 321

Conread position: 119-542
Cow position: chr25:34770146-34769721 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 123-554
Cow position: chr25:34713850-34714281 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 256
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 176, 160

Conread position: 136-512
Cow position: chr25:33144846-33145220 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 231
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 171, 165

Conread position: 136-512
Cow position: chr25:34732611-34732235 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 239
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 136-553
Cow position: chr25:33157476-33157059 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 297

Conread position: 138-461
Cow position: chr25:366724-367047 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 205
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 110, 104

Conread position: 138-552
Cow position: chr25:346447-346861 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 244
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 187, 193

Conread position: 156-585
Cow position: chr25:23420316-23420750 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 276

Conread position: 158-552
Cow position: chr25:34446873-34447267 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 244
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 23, 55

Conread position: 163-481
Cow position: chr25:326947-327265 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 192
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 190-433
Cow position: chr25:34432987-34433231 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 160
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 241, 0

Conread position: 200-553
Cow position: chr25:34770147-34769794 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 228
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 212-553
Cow position: chr25:33127707-33128048 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 214
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 222-564
Cow position: chr25:33298478-33298822 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 212
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 88, 81

Conread position: 223-541
Cow position: chr25:366725-367043 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 207
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 223-569
Cow position: chr25:346448-346796 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 215
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 318, 0

Conread position: 286-564
Cow position: chr25:33157494-33157214 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 177
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 257, 0

Conread position: 297-564
Cow position: chr25:33298469-33298738 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 182
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 119, 113

Show alignments to all cow chromosomes.