Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042B01.3 |
| Conread position: | 1-238 |
| Cow position: | chr28:9290449-9290685 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 110, 19 |
| Conread position: | 1-299 |
| Cow position: | chr28:33210343-33210641 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 83, 6 |
| Conread position: | 1-310 |
| Cow position: | chr28:7758522-7758830 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 102 |
| Conread position: | 1-411 |
| Cow position: | chr28:7810537-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 268 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 108, 97 |
| Conread position: | 1-494 |
| Cow position: | chr28:7810462-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 108, 63 |
| Conread position: | 1-514 |
| Cow position: | chr28:9253133-9253647 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 484, 0 |
| Conread position: | 1-525 |
| Cow position: | chr28:9298347-9298867 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 1-551 |
| Cow position: | chr28:7757614-7758164 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 102 |
| Conread position: | 6-353 |
| Cow position: | chr28:34696199-34696546 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 76 |
| Conread position: | 6-365 |
| Cow position: | chr28:33210263-33210623 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 181, 186 |
| Conread position: | 7-553 |
| Cow position: | chr28:7758124-7758654 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 76, 102 |
| Conread position: | 18-565 |
| Cow position: | chr28:7810395-7810936 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 130 |
| Conread position: | 19-469 |
| Cow position: | chr28:7757884-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 85 |
| Conread position: | 19-558 |
| Cow position: | chr28:9290136-9290669 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 73 |
| Conread position: | 19-565 |
| Cow position: | chr28:9252983-9253532 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 224 |
| Conread position: | 19-576 |
| Cow position: | chr28:9252898-9253459 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 24-552 |
| Cow position: | chr28:11333748-11333220 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 325 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 86, 80 |
| Conread position: | 25-339 |
| Cow position: | chr28:7758462-7758776 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 25-551 |
| Cow position: | chr28:7757470-7757996 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-558 |
| Cow position: | chr28:9253073-9253606 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 88 |
| Conread position: | 25-566 |
| Cow position: | chr28:7757554-7758098 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 79 |
| Conread position: | 26-566 |
| Cow position: | chr28:9298289-9298826 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 158, 20 |
| Conread position: | 26-580 |
| Cow position: | chr28:11334250-11333693 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 327 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 30-460 |
| Cow position: | chr28:9299280-9299707 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 148, 169 |
| Conread position: | 31-599 |
| Cow position: | chr28:7757392-7757965 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 394 |
| Conread position: | 33-353 |
| Cow position: | chr28:11333823-11333503 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 151, 170 |
| Conread position: | 34-353 |
| Cow position: | chr28:34673586-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 34-501 |
| Cow position: | chr28:11333990-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 229, 208 |
| Conread position: | 34-507 |
| Cow position: | chr28:9298713-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 70 |
| Conread position: | 34-514 |
| Cow position: | chr28:34673418-34673898 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 34-553 |
| Cow position: | chr28:7757815-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 34-561 |
| Cow position: | chr28:7758387-7758916 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 265, 260 |
| Conread position: | 34-564 |
| Cow position: | chr28:9290067-9290593 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 70 |
| Conread position: | 36-351 |
| Cow position: | chr28:9290400-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 36-553 |
| Cow position: | chr28:7758304-7758821 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 468 |
| Conread position: | 46-434 |
| Cow position: | chr28:34696155-34696543 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 46-557 |
| Cow position: | chr28:9298643-9299151 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 330 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 47-574 |
| Cow position: | chr28:9289910-9290437 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 322 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 77, 36 |
| Conread position: | 51-362 |
| Cow position: | chr28:33210223-33210535 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 5, 44 |
| Conread position: | 51-551 |
| Cow position: | chr28:34679562-34679072 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 51-561 |
| Cow position: | chr28:9299217-9299725 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 145, 149 |
| Conread position: | 53-508 |
| Cow position: | chr28:34673353-34673809 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 281 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 57-566 |
| Cow position: | chr28:7757334-7757846 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 464, 460 |
| Conread position: | 74-539 |
| Cow position: | chr28:7810283-7810739 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 301 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 116-557 |
| Cow position: | chr28:9289817-9290254 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 230, 64 |
| Conread position: | 122-515 |
| Cow position: | chr28:34679575-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 137-515 |
| Cow position: | chr28:34673353-34673731 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 218, 226 |
| Conread position: | 214-574 |
| Cow position: | chr28:9298643-9299002 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 151, 24 |
| Conread position: | 223-571 |
| Cow position: | chr28:33210228-33210579 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 321, 0 |
Show alignments to all cow chromosomes.