Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042B01.3 |
| Conread position: | 1-260 |
| Cow position: | chr7:8325855-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 202, 182 |
| Conread position: | 1-273 |
| Cow position: | chr7:1440004-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 1-363 |
| Cow position: | chr7:18390444-18390806 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 106, 97 |
| Conread position: | 1-378 |
| Cow position: | chr7:18390360-18390740 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 11 |
| Conread position: | 1-387 |
| Cow position: | chr7:11434618-11434239 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 125, 71 |
| Conread position: | 1-431 |
| Cow position: | chr7:8243668-8244095 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 273, 286 |
| Conread position: | 1-489 |
| Cow position: | chr7:8278130-8278616 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 194 |
| Conread position: | 1-513 |
| Cow position: | chr7:8324931-8325443 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 111 |
| Conread position: | 1-513 |
| Cow position: | chr7:42878994-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 264 |
| Conread position: | 1-514 |
| Cow position: | chr7:8277374-8277887 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 1-514 |
| Cow position: | chr7:8324763-8325276 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 1-515 |
| Cow position: | chr7:8325519-8326033 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 1-519 |
| Cow position: | chr7:8243333-8243850 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 47 |
| Conread position: | 1-526 |
| Cow position: | chr7:1014969-1015496 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 99 |
| Conread position: | 1-532 |
| Cow position: | chr7:3179979-3180510 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 103 |
| Conread position: | 1-533 |
| Cow position: | chr7:3180315-3180846 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 94 |
| Conread position: | 1-534 |
| Cow position: | chr7:11601157-11600624 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 1-542 |
| Cow position: | chr7:42879162-42878621 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 1-547 |
| Cow position: | chr7:8242829-8243372 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 340 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 109, 94 |
| Conread position: | 1-547 |
| Cow position: | chr7:11434940-11434418 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 34, 30 |
| Conread position: | 1-551 |
| Cow position: | chr7:1014471-1015015 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 340 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 117, 97 |
| Conread position: | 1-551 |
| Cow position: | chr7:3179895-3180445 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 106 |
| Conread position: | 1-553 |
| Cow position: | chr7:1014885-1015437 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 192 |
| Conread position: | 1-553 |
| Cow position: | chr7:3179727-3180279 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 99 |
| Conread position: | 1-553 |
| Cow position: | chr7:42878910-42878358 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 180 |
| Conread position: | 1-557 |
| Cow position: | chr7:42878826-42878270 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 97 |
| Conread position: | 1-558 |
| Cow position: | chr7:11600989-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 348 |
| Conread position: | 1-566 |
| Cow position: | chr7:42879078-42878511 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 102 |
| Conread position: | 1-570 |
| Cow position: | chr7:3179811-3180382 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 1-570 |
| Cow position: | chr7:8277710-8278282 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 267 |
| Conread position: | 1-592 |
| Cow position: | chr7:1014303-1014893 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 99 |
| Conread position: | 2-565 |
| Cow position: | chr7:1439584-1440151 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 56 |
| Conread position: | 3-513 |
| Cow position: | chr7:18390278-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 95 |
| Conread position: | 3-560 |
| Cow position: | chr7:1014803-1015362 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 107 |
| Conread position: | 5-551 |
| Cow position: | chr7:3180067-3180613 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 91 |
| Conread position: | 5-559 |
| Cow position: | chr7:1439416-1439975 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 169 |
| Conread position: | 6-525 |
| Cow position: | chr7:1438200-1438719 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 112, 97 |
| Conread position: | 10-533 |
| Cow position: | chr7:11601228-11600709 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 17-515 |
| Cow position: | chr7:8325370-8325865 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 11 |
| Conread position: | 19-533 |
| Cow position: | chr7:3180249-3180763 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 19-560 |
| Cow position: | chr7:1014735-1015278 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 94 |
| Conread position: | 21-524 |
| Cow position: | chr7:42879310-42878807 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 92 |
| Conread position: | 22-553 |
| Cow position: | chr7:18390213-18390744 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 158 |
| Conread position: | 34-513 |
| Cow position: | chr7:8277575-8278054 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 253 |
| Conread position: | 34-514 |
| Cow position: | chr7:8325636-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 161 |
| Conread position: | 34-515 |
| Cow position: | chr7:8242946-8243426 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 307 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 34-515 |
| Cow position: | chr7:8277323-8277804 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 314 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 34-515 |
| Cow position: | chr7:11434753-11434279 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 34-521 |
| Cow position: | chr7:1439787-1440272 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 34-531 |
| Cow position: | chr7:1439704-1440198 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 34-551 |
| Cow position: | chr7:42879213-42878696 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-553 |
| Cow position: | chr7:8277911-8278430 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 150 |
| Conread position: | 34-564 |
| Cow position: | chr7:3180180-3180712 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 38-564 |
| Cow position: | chr7:18390145-18390673 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 40-515 |
| Cow position: | chr7:8278001-8278474 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 141 |
| Conread position: | 40-565 |
| Cow position: | chr7:8325306-8325834 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 42-514 |
| Cow position: | chr7:8277499-8277971 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 297 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 86, 57 |
| Conread position: | 46-547 |
| Cow position: | chr7:8243545-8244041 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 47-553 |
| Cow position: | chr7:11434824-11434325 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 329 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 51-512 |
| Cow position: | chr7:8324729-8325190 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 54 |
| Conread position: | 56-564 |
| Cow position: | chr7:18389995-18390505 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 139 |
| Conread position: | 58-566 |
| Cow position: | chr7:42879442-42878931 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 50 |
| Conread position: | 70-566 |
| Cow position: | chr7:3179712-3180210 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 123 |
| Conread position: | 135-515 |
| Cow position: | chr7:8324729-8325109 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 223, 214 |
| Conread position: | 135-517 |
| Cow position: | chr7:11434974-11434606 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 222, 129 |
| Conread position: | 135-531 |
| Cow position: | chr7:8277256-8277650 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 69, 44 |
| Conread position: | 136-558 |
| Cow position: | chr7:11601275-11600852 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 138-434 |
| Cow position: | chr7:1014272-1014567 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 291, 0 |
| Conread position: | 139-564 |
| Cow position: | chr7:42879276-42878849 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 131 |
| Conread position: | 144-514 |
| Cow position: | chr7:8242804-8243174 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 117, 148 |
| Conread position: | 169-551 |
| Cow position: | chr7:1014219-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 298, 288 |
| Conread position: | 286-565 |
| Cow position: | chr7:8277237-8277518 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 316-591 |
| Cow position: | chr7:3179706-3179986 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 234, 0 |
Show alignments to all cow chromosomes.