Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042B01.3 |
| Conread position: | 1-239 |
| Cow position: | chrX:25310340-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 94, 106 |
| Conread position: | 1-512 |
| Cow position: | chrX:12627552-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 105 |
| Conread position: | 1-526 |
| Cow position: | chrX:25324717-25324196 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 344 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 1-548 |
| Cow position: | chrX:25324969-25324423 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 81 |
| Conread position: | 1-553 |
| Cow position: | chrX:25325053-25324501 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 380 |
| Conread position: | 1-554 |
| Cow position: | chrX:25324801-25324248 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 102 |
| Conread position: | 1-560 |
| Cow position: | chrX:25325305-25324744 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 549, 0 |
| Conread position: | 1-565 |
| Cow position: | chrX:25325473-25324906 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 181 |
| Conread position: | 1-566 |
| Cow position: | chrX:25309836-25310403 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 185 |
| Conread position: | 1-566 |
| Cow position: | chrX:25325221-25324654 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 118 |
| Conread position: | 1-566 |
| Cow position: | chrX:29045629-29045083 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 358 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 110, 103 |
| Conread position: | 1-586 |
| Cow position: | chrX:29045230-29044642 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 98 |
| Conread position: | 7-516 |
| Cow position: | chrX:13826827-13826319 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 12-508 |
| Cow position: | chrX:25325882-25325386 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 21-500 |
| Cow position: | chrX:25310108-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 87 |
| Conread position: | 23-376 |
| Cow position: | chrX:29045775-29045422 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 336, 327 |
| Conread position: | 25-513 |
| Cow position: | chrX:25309944-25310432 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-515 |
| Cow position: | chrX:25309776-25310266 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 83 |
| Conread position: | 31-560 |
| Cow position: | chrX:25325779-25325248 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 86 |
| Conread position: | 33-557 |
| Cow position: | chrX:25325105-25324579 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 34-557 |
| Cow position: | chrX:25310037-25310562 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 34-564 |
| Cow position: | chrX:25325524-25324992 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 74 |
| Conread position: | 35-566 |
| Cow position: | chrX:29045361-29044831 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 509, 32 |
| Conread position: | 36-566 |
| Cow position: | chrX:25325606-25325074 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 246 |
| Conread position: | 40-565 |
| Cow position: | chrX:25309707-25310235 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 154 |
| Conread position: | 42-513 |
| Cow position: | chrX:12627509-12627979 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 43-515 |
| Cow position: | chrX:12627427-12627897 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 44-502 |
| Cow position: | chrX:29045838-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 55-349 |
| Cow position: | chrX:13826948-13826654 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 137 |
| Conread position: | 76-558 |
| Cow position: | chrX:25309659-25310141 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 259 |
| Conread position: | 103-566 |
| Cow position: | chrX:29045867-29045400 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 81 |
| Conread position: | 292-585 |
| Cow position: | chrX:12627340-12627637 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 76 |
Show alignments to all cow chromosomes.