Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042E08.3 |
| Conread position: | 104-366 |
| Cow position: | chr3:6713879-6714144 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-366 |
| Cow position: | chr3:10243533-10243796 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 137 |
| Conread position: | 104-366 |
| Cow position: | chr3:13276409-13276145 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 104-366 |
| Cow position: | chr3:13723841-13723575 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-366 |
| Cow position: | chr3:15416338-15416603 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-366 |
| Cow position: | chr3:24443222-24442966 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 102, 91 |
| Conread position: | 104-366 |
| Cow position: | chr3:40826269-40826535 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 102, 137 |
| Conread position: | 104-366 |
| Cow position: | chr3:75038970-75038705 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 137 |
| Conread position: | 104-366 |
| Cow position: | chr3:81100952-81101215 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 112, 66 |
| Conread position: | 104-379 |
| Cow position: | chr3:823219-822938 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-379 |
| Cow position: | chr3:2866783-2866503 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-379 |
| Cow position: | chr3:6837901-6838181 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-379 |
| Cow position: | chr3:19880923-19881201 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-379 |
| Cow position: | chr3:35342522-35342802 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-379 |
| Cow position: | chr3:43084114-43084395 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-379 |
| Cow position: | chr3:49605567-49605290 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-379 |
| Cow position: | chr3:53880395-53880115 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 102, 136 |
| Conread position: | 107-349 |
| Cow position: | chr3:56963557-56963311 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 107-361 |
| Cow position: | chr3:27689348-27689601 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 134 |
| Conread position: | 108-366 |
| Cow position: | chr3:19112098-19111839 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 41 |
| Conread position: | 116-363 |
| Cow position: | chr3:5474423-5474673 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 77, 6 |
| Conread position: | 116-363 |
| Cow position: | chr3:68697080-68696831 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 6 |
| Conread position: | 116-366 |
| Cow position: | chr3:49611323-49611071 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 91, 6 |
| Conread position: | 116-366 |
| Cow position: | chr3:58034753-58034500 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 88, 118 |
| Conread position: | 116-366 |
| Cow position: | chr3:68870867-68870613 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 6, 125 |
| Conread position: | 116-379 |
| Cow position: | chr3:40521055-40520788 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 6 |
| Conread position: | 117-351 |
| Cow position: | chr3:77272911-77272674 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 124 |
| Conread position: | 118-372 |
| Cow position: | chr3:63148751-63148496 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 5 |
| Conread position: | 122-376 |
| Cow position: | chr3:67450746-67450997 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 72 |
| Conread position: | 149-366 |
| Cow position: | chr3:37349236-37349016 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 91 |
| Conread position: | 153-366 |
| Cow position: | chr3:44504625-44504409 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 63, 99 |
| Conread position: | 165-361 |
| Cow position: | chr3:18195488-18195683 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 368-744 |
| Cow position: | chr3:33503606-33503222 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 233, 67 |
| Conread position: | 369-625 |
| Cow position: | chr3:67997551-67997298 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 155, 20 |
| Conread position: | 372-624 |
| Cow position: | chr3:14717253-14717505 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 144, 10 |
| Conread position: | 375-527 |
| Cow position: | chr3:4080413-4080262 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 375-724 |
| Cow position: | chr3:57968785-57969141 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 108, 6 |
| Conread position: | 375-750 |
| Cow position: | chr3:43483400-43483793 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 230, 205 |
| Conread position: | 376-613 |
| Cow position: | chr3:25169748-25169987 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 142, 81 |
| Conread position: | 381-750 |
| Cow position: | chr3:69590668-69590288 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 147, 86 |
| Conread position: | 382-750 |
| Cow position: | chr3:67451761-67452149 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 145, 183 |
| Conread position: | 383-623 |
| Cow position: | chr3:28947271-28947025 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 150, 204 |
| Conread position: | 383-624 |
| Cow position: | chr3:66134213-66133966 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 111, 106 |
| Conread position: | 384-734 |
| Cow position: | chr3:16757616-16757986 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 389-603 |
| Cow position: | chr3:43901753-43901970 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 133, 124 |
| Conread position: | 389-626 |
| Cow position: | chr3:38887941-38888179 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 79 |
| Conread position: | 390-529 |
| Cow position: | chr3:38704532-38704671 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 390-627 |
| Cow position: | chr3:58443751-58443504 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 143, 198 |
| Conread position: | 390-751 |
| Cow position: | chr3:18528032-18528413 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 170, 67 |
| Conread position: | 392-598 |
| Cow position: | chr3:36727658-36727865 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 416-726 |
| Cow position: | chr3:60262538-60262227 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 96, 219 |
Show alignments to all cow chromosomes.