Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042E08.3 |
| Conread position: | 104-366 |
| Cow position: | chr5:4434727-4434462 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-366 |
| Cow position: | chr5:6125385-6125120 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 102, 136 |
| Conread position: | 104-366 |
| Cow position: | chr5:11632208-11631943 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-366 |
| Cow position: | chr5:46735499-46735234 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 102, 137 |
| Conread position: | 104-368 |
| Cow position: | chr5:31120429-31120162 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 98, 137 |
| Conread position: | 104-379 |
| Cow position: | chr5:48026047-48026326 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-379 |
| Cow position: | chr5:54136861-54136581 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 113-366 |
| Cow position: | chr5:24239899-24240150 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 116-366 |
| Cow position: | chr5:443519-443267 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 86, 6 |
| Conread position: | 116-366 |
| Cow position: | chr5:31709090-31709342 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 89, 6 |
| Conread position: | 116-379 |
| Cow position: | chr5:10066760-10066493 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 6 |
| Conread position: | 117-366 |
| Cow position: | chr5:14636788-14636536 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 88, 124 |
| Conread position: | 120-366 |
| Cow position: | chr5:1339129-1338879 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 121 |
| Conread position: | 135-368 |
| Cow position: | chr5:51942456-51942692 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 101 |
| Conread position: | 135-368 |
| Cow position: | chr5:51947409-51947645 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 101 |
| Conread position: | 153-366 |
| Cow position: | chr5:51069036-51069248 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 170-361 |
| Cow position: | chr5:40772379-40772188 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 368-749 |
| Cow position: | chr5:4438176-4438570 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 181, 216 |
| Conread position: | 373-747 |
| Cow position: | chr5:39036262-39036634 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 66, 5 |
| Conread position: | 374-540 |
| Cow position: | chr5:40880473-40880637 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 154, 51 |
| Conread position: | 374-547 |
| Cow position: | chr5:63072777-63072603 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 160, 33 |
| Conread position: | 375-613 |
| Cow position: | chr5:41200615-41200373 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 184, 46 |
| Conread position: | 376-736 |
| Cow position: | chr5:15764902-15765283 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 92 |
| Conread position: | 377-749 |
| Cow position: | chr5:21776718-21776339 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 54 |
| Conread position: | 381-750 |
| Cow position: | chr5:28699442-28699051 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 64 |
| Conread position: | 390-506 |
| Cow position: | chr5:62548288-62548404 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 390-626 |
| Cow position: | chr5:13989397-13989156 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 169, 41 |
| Conread position: | 390-749 |
| Cow position: | chr5:21137070-21136700 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 391-626 |
| Cow position: | chr5:30793349-30793590 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 396-750 |
| Cow position: | chr5:16309117-16309486 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 108, 176 |
| Conread position: | 397-726 |
| Cow position: | chr5:40050434-40050092 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 130, 154 |
| Conread position: | 411-735 |
| Cow position: | chr5:57791506-57791171 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 414-750 |
| Cow position: | chr5:5393648-5393997 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 114, 138 |
Show alignments to all cow chromosomes.