Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042E08.3 |
| Conread position: | 97-366 |
| Cow position: | chr9:62734316-62734052 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 99-366 |
| Cow position: | chr9:28658209-28657942 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 107, 142 |
| Conread position: | 102-366 |
| Cow position: | chr9:44168433-44168699 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 21 |
| Conread position: | 102-366 |
| Cow position: | chr9:50063093-50062827 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 113, 136 |
| Conread position: | 104-366 |
| Cow position: | chr9:2856689-2856954 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-366 |
| Cow position: | chr9:2873319-2873584 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 136 |
| Conread position: | 104-366 |
| Cow position: | chr9:4940653-4940389 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 82, 135 |
| Conread position: | 104-366 |
| Cow position: | chr9:10856865-10857130 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 98 |
| Conread position: | 104-366 |
| Cow position: | chr9:19156448-19156182 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 112, 129 |
| Conread position: | 104-366 |
| Cow position: | chr9:44203235-44202970 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-366 |
| Cow position: | chr9:54413761-54413499 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 104-379 |
| Cow position: | chr9:7104386-7104106 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-379 |
| Cow position: | chr9:28785187-28785469 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-379 |
| Cow position: | chr9:37174560-37174280 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 136 |
| Conread position: | 104-379 |
| Cow position: | chr9:50840278-50840557 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 107-371 |
| Cow position: | chr9:57936840-57936578 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 116-363 |
| Cow position: | chr9:49754556-49754307 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 91, 122 |
| Conread position: | 117-363 |
| Cow position: | chr9:37158752-37158503 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 89, 117 |
| Conread position: | 341-731 |
| Cow position: | chr9:40439881-40439502 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 9, 29 |
| Conread position: | 341-750 |
| Cow position: | chr9:23367776-23367350 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 244 |
| Conread position: | 349-631 |
| Cow position: | chr9:55396124-55395838 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 182, 19 |
| Conread position: | 350-731 |
| Cow position: | chr9:49636179-49636572 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 15 |
| Conread position: | 369-603 |
| Cow position: | chr9:23841963-23842199 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 63 |
| Conread position: | 373-750 |
| Cow position: | chr9:40008520-40008901 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 242, 84 |
| Conread position: | 375-626 |
| Cow position: | chr9:34376209-34375954 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 158, 96 |
| Conread position: | 375-737 |
| Cow position: | chr9:51592405-51592775 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 143, 60 |
| Conread position: | 375-744 |
| Cow position: | chr9:42930992-42930620 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 153, 91 |
| Conread position: | 375-748 |
| Cow position: | chr9:18407327-18406927 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 178 |
| Conread position: | 376-589 |
| Cow position: | chr9:37974207-37974423 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 381-600 |
| Cow position: | chr9:13115896-13115674 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 385-600 |
| Cow position: | chr9:24406544-24406762 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 390-636 |
| Cow position: | chr9:46237652-46237401 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 138, 76 |
| Conread position: | 390-745 |
| Cow position: | chr9:6265443-6265811 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 136, 77 |
| Conread position: | 395-748 |
| Cow position: | chr9:47718698-47718329 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 140, 215 |
| Conread position: | 413-624 |
| Cow position: | chr9:53632618-53632828 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 435-751 |
| Cow position: | chr9:54928418-54928096 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 47, 5 |
Show alignments to all cow chromosomes.