Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042E08.3 |
| Conread position: | 99-379 |
| Cow position: | chrX:11976698-11976412 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 104-363 |
| Cow position: | chrX:15621778-15621516 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-366 |
| Cow position: | chrX:2579174-2579437 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 136 |
| Conread position: | 104-366 |
| Cow position: | chrX:4623200-4622935 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 98, 136 |
| Conread position: | 104-366 |
| Cow position: | chrX:9169852-9169587 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-366 |
| Cow position: | chrX:24770103-24769838 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 92 |
| Conread position: | 104-366 |
| Cow position: | chrX:26231005-26230740 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-366 |
| Cow position: | chrX:26530726-26530991 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 102, 137 |
| Conread position: | 104-366 |
| Cow position: | chrX:31979086-31978822 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 104-379 |
| Cow position: | chrX:8435445-8435166 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 107-366 |
| Cow position: | chrX:11951014-11950752 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 99, 134 |
| Conread position: | 107-366 |
| Cow position: | chrX:23327047-23326784 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 107-366 |
| Cow position: | chrX:24483606-24483344 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 98, 134 |
| Conread position: | 107-367 |
| Cow position: | chrX:42042589-42042326 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 84 |
| Conread position: | 107-479 |
| Cow position: | chrX:27072752-27073143 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 89, 96 |
| Conread position: | 116-366 |
| Cow position: | chrX:5865912-5866164 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 7 |
| Conread position: | 116-366 |
| Cow position: | chrX:12307996-12307744 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 6 |
| Conread position: | 116-379 |
| Cow position: | chrX:19398544-19398811 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 6 |
| Conread position: | 123-366 |
| Cow position: | chrX:21767572-21767818 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 117 |
| Conread position: | 147-366 |
| Cow position: | chrX:8104710-8104488 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 94 |
| Conread position: | 148-362 |
| Cow position: | chrX:41860308-41860523 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 131, 91 |
| Conread position: | 153-363 |
| Cow position: | chrX:10823288-10823079 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 127, 74 |
| Conread position: | 339-482 |
| Cow position: | chrX:11546951-11547093 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 342-633 |
| Cow position: | chrX:33003716-33004010 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 218, 27 |
| Conread position: | 347-626 |
| Cow position: | chrX:19556474-19556756 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 349-628 |
| Cow position: | chrX:23325868-23325587 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 20 |
| Conread position: | 369-599 |
| Cow position: | chrX:2569731-2569498 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 92, 14 |
| Conread position: | 369-626 |
| Cow position: | chrX:15574396-15574139 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 164, 118 |
| Conread position: | 369-746 |
| Cow position: | chrX:23831952-23831568 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 369-750 |
| Cow position: | chrX:36269732-36270117 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 161, 62 |
| Conread position: | 373-720 |
| Cow position: | chrX:48854952-48854606 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 152, 172 |
| Conread position: | 375-529 |
| Cow position: | chrX:24951047-24950893 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 375-598 |
| Cow position: | chrX:11509562-11509787 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 191, 209 |
| Conread position: | 375-729 |
| Cow position: | chrX:19163140-19162766 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 375-744 |
| Cow position: | chrX:36294630-36295012 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 185 |
| Conread position: | 375-746 |
| Cow position: | chrX:40517082-40517463 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 153, 205 |
| Conread position: | 375-748 |
| Cow position: | chrX:17522721-17522324 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 153, 62 |
| Conread position: | 375-761 |
| Cow position: | chrX:6660010-6660384 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 376-530 |
| Cow position: | chrX:19599527-19599682 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 376-603 |
| Cow position: | chrX:18152760-18152534 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 174, 36 |
| Conread position: | 376-603 |
| Cow position: | chrX:24162962-24162741 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 216, 85 |
| Conread position: | 376-747 |
| Cow position: | chrX:27407964-27407589 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 150, 104 |
| Conread position: | 376-750 |
| Cow position: | chrX:3016490-3016877 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 140, 23 |
| Conread position: | 376-750 |
| Cow position: | chrX:31982131-31981734 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 382-749 |
| Cow position: | chrX:29068512-29068880 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 135, 118 |
| Conread position: | 382-750 |
| Cow position: | chrX:12750474-12750851 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 130, 52 |
| Conread position: | 382-750 |
| Cow position: | chrX:16071104-16071475 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 178, 30 |
| Conread position: | 383-578 |
| Cow position: | chrX:14853662-14853464 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 120, 55 |
| Conread position: | 383-741 |
| Cow position: | chrX:15379878-15380259 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 129, 208 |
| Conread position: | 384-643 |
| Cow position: | chrX:46274668-46274929 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 7, 48 |
| Conread position: | 390-626 |
| Cow position: | chrX:35694550-35694792 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 106, 99 |
| Conread position: | 390-630 |
| Cow position: | chrX:25331143-25331380 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 144, 74 |
| Conread position: | 390-749 |
| Cow position: | chrX:10409576-10409194 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 135, 162 |
| Conread position: | 390-750 |
| Cow position: | chrX:20383026-20382657 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 138, 238 |
| Conread position: | 390-750 |
| Cow position: | chrX:32002914-32002535 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 391-628 |
| Cow position: | chrX:1964222-1964472 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 137, 193 |
| Conread position: | 395-727 |
| Cow position: | chrX:24529157-24529498 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 39 |
| Conread position: | 396-750 |
| Cow position: | chrX:37949302-37949665 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 263 |
Show alignments to all cow chromosomes.