Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042K20.5 |
| Conread position: | 851-974 |
| Cow position: | chr1:7740139-7740016 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 121 |
| Conread position: | 852-970 |
| Cow position: | chr1:25956091-25955967 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 853-968 |
| Cow position: | chr1:98556924-98557045 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 853-968 |
| Cow position: | chr1:100552160-100552049 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 853-970 |
| Cow position: | chr1:2715212-2715094 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 854-970 |
| Cow position: | chr1:70044537-70044425 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 854-1007 |
| Cow position: | chr1:102754044-102753894 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 146, 53 |
| Conread position: | 855-961 |
| Cow position: | chr1:40724784-40724677 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 855-965 |
| Cow position: | chr1:45680460-45680352 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 855-965 |
| Cow position: | chr1:63079193-63079084 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 855-965 |
| Cow position: | chr1:80733187-80733079 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-966 |
| Cow position: | chr1:8778146-8778259 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 855-967 |
| Cow position: | chr1:11770050-11770161 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 855-968 |
| Cow position: | chr1:6731371-6731254 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 855-968 |
| Cow position: | chr1:11729364-11729249 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 50 |
| Conread position: | 855-968 |
| Cow position: | chr1:20667558-20667668 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 855-968 |
| Cow position: | chr1:25021886-25022001 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 855-968 |
| Cow position: | chr1:40212156-40212270 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 855-968 |
| Cow position: | chr1:40303740-40303625 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 855-968 |
| Cow position: | chr1:67743546-67743662 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 855-968 |
| Cow position: | chr1:95835603-95835724 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 855-969 |
| Cow position: | chr1:53474340-53474228 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 855-969 |
| Cow position: | chr1:91065965-91066079 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 855-970 |
| Cow position: | chr1:39703144-39703036 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 855-970 |
| Cow position: | chr1:54156542-54156663 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 855-970 |
| Cow position: | chr1:61011367-61011253 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-970 |
| Cow position: | chr1:66752440-66752557 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 855-970 |
| Cow position: | chr1:70416568-70416688 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 855-970 |
| Cow position: | chr1:72011630-72011741 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 855-970 |
| Cow position: | chr1:80423540-80423660 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 855-970 |
| Cow position: | chr1:85339569-85339456 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-971 |
| Cow position: | chr1:3923612-3923729 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-973 |
| Cow position: | chr1:41022608-41022488 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 855-973 |
| Cow position: | chr1:78793811-78793933 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 855-973 |
| Cow position: | chr1:82936413-82936528 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 855-975 |
| Cow position: | chr1:21787516-21787404 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 855-975 |
| Cow position: | chr1:42541783-42541666 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 855-975 |
| Cow position: | chr1:43505716-43505597 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 855-975 |
| Cow position: | chr1:75227133-75227252 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 855-975 |
| Cow position: | chr1:95618833-95618710 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 121 |
| Conread position: | 855-999 |
| Cow position: | chr1:43855481-43855339 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 855-1004 |
| Cow position: | chr1:22526066-22525916 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 118 |
| Conread position: | 855-1009 |
| Cow position: | chr1:51860372-51860527 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 119 |
| Conread position: | 855-1012 |
| Cow position: | chr1:6941658-6941499 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 120 |
| Conread position: | 855-1012 |
| Cow position: | chr1:45223768-45223612 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 855-1012 |
| Cow position: | chr1:51394610-51394449 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 122 |
| Conread position: | 855-1012 |
| Cow position: | chr1:56477777-56477623 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-1014 |
| Cow position: | chr1:78794044-78794209 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 855-1026 |
| Cow position: | chr1:34952430-34952260 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 94 |
| Conread position: | 855-1035 |
| Cow position: | chr1:84787452-84787274 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 135, 32 |
| Conread position: | 856-968 |
| Cow position: | chr1:98583939-98583827 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 856-970 |
| Cow position: | chr1:10778745-10778635 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 856-970 |
| Cow position: | chr1:15334079-15333963 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 856-970 |
| Cow position: | chr1:79630729-79630844 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 856-970 |
| Cow position: | chr1:81481194-81481310 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 856-1002 |
| Cow position: | chr1:99609558-99609409 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 53, 119 |
| Conread position: | 857-973 |
| Cow position: | chr1:16060818-16060935 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 857-974 |
| Cow position: | chr1:90820290-90820410 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 59, 118 |
| Conread position: | 857-975 |
| Cow position: | chr1:63905074-63905191 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 857-1004 |
| Cow position: | chr1:40077980-40077832 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 858-968 |
| Cow position: | chr1:32014380-32014270 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 858-970 |
| Cow position: | chr1:93528883-93528773 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 858-975 |
| Cow position: | chr1:242741-242625 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 858-1012 |
| Cow position: | chr1:31256041-31256195 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 115 |
| Conread position: | 859-969 |
| Cow position: | chr1:45019618-45019728 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 91, 62 |
| Conread position: | 861-1009 |
| Cow position: | chr1:102349573-102349719 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 33 |
| Conread position: | 861-1026 |
| Cow position: | chr1:64302064-64302229 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 137, 15 |
| Conread position: | 877-970 |
| Cow position: | chr1:4512149-4512055 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.