Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042K20.5 |
| Conread position: | 850-956 |
| Cow position: | chr13:37946591-37946484 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 850-968 |
| Cow position: | chr13:7104448-7104571 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 851-970 |
| Cow position: | chr13:24753689-24753806 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 852-970 |
| Cow position: | chr13:18340327-18340452 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 852-970 |
| Cow position: | chr13:56432024-56431906 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 855-966 |
| Cow position: | chr13:9707947-9707833 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 855-968 |
| Cow position: | chr13:6980725-6980837 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 855-968 |
| Cow position: | chr13:9492576-9492690 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 19 |
| Conread position: | 855-968 |
| Cow position: | chr13:42200420-42200536 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 855-969 |
| Cow position: | chr13:34261035-34261149 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 855-970 |
| Cow position: | chr13:3003286-3003394 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 855-970 |
| Cow position: | chr13:9975268-9975157 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 855-970 |
| Cow position: | chr13:14063721-14063602 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 855-970 |
| Cow position: | chr13:14782148-14782261 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 855-970 |
| Cow position: | chr13:16908013-16908136 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-970 |
| Cow position: | chr13:20784394-20784509 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 855-970 |
| Cow position: | chr13:21170328-21170445 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-970 |
| Cow position: | chr13:21981170-21981055 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 109 |
| Conread position: | 855-970 |
| Cow position: | chr13:37405514-37405630 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 855-970 |
| Cow position: | chr13:41979337-41979221 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 855-970 |
| Cow position: | chr13:52055793-52055673 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 855-970 |
| Cow position: | chr13:52477845-52477727 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 855-970 |
| Cow position: | chr13:57986132-57986019 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 855-971 |
| Cow position: | chr13:55775165-55775281 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 69, 93 |
| Conread position: | 855-974 |
| Cow position: | chr13:6079603-6079490 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-974 |
| Cow position: | chr13:8699943-8699815 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 855-975 |
| Cow position: | chr13:9124728-9124848 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 855-975 |
| Cow position: | chr13:11260077-11260198 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 67, 119 |
| Conread position: | 855-975 |
| Cow position: | chr13:53847319-53847198 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 119 |
| Conread position: | 855-982 |
| Cow position: | chr13:10522739-10522868 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 855-982 |
| Cow position: | chr13:16020659-16020782 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 855-989 |
| Cow position: | chr13:29831627-29831498 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 132, 65 |
| Conread position: | 855-993 |
| Cow position: | chr13:2192537-2192676 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 120, 31 |
| Conread position: | 855-994 |
| Cow position: | chr13:10040756-10040617 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 855-1007 |
| Cow position: | chr13:15193088-15192930 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 123 |
| Conread position: | 855-1010 |
| Cow position: | chr13:37555071-37554918 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 119 |
| Conread position: | 855-1011 |
| Cow position: | chr13:7097386-7097547 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 855-1011 |
| Cow position: | chr13:55765376-55765221 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 89 |
| Conread position: | 855-1012 |
| Cow position: | chr13:24715049-24715201 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 855-1013 |
| Cow position: | chr13:57446313-57446158 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 856-969 |
| Cow position: | chr13:21275657-21275777 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 856-970 |
| Cow position: | chr13:14576016-14576132 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 102 |
| Conread position: | 856-975 |
| Cow position: | chr13:11565640-11565760 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 118 |
| Conread position: | 856-988 |
| Cow position: | chr13:38012140-38012268 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 856-1011 |
| Cow position: | chr13:52536372-52536522 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 144, 45 |
| Conread position: | 857-966 |
| Cow position: | chr13:53138242-53138349 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 857-970 |
| Cow position: | chr13:6973964-6974080 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 52, 93 |
| Conread position: | 857-970 |
| Cow position: | chr13:9108870-9108756 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 857-1012 |
| Cow position: | chr13:8367520-8367682 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.