Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042K20.5 |
| Conread position: | 839-975 |
| Cow position: | chr9:34958225-34958089 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 134 |
| Conread position: | 851-969 |
| Cow position: | chr9:4629948-4630066 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 851-975 |
| Cow position: | chr9:35932975-35932847 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 851-985 |
| Cow position: | chr9:34034109-34034238 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 853-970 |
| Cow position: | chr9:4263248-4263127 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 105 |
| Conread position: | 853-970 |
| Cow position: | chr9:36401819-36401702 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 853-980 |
| Cow position: | chr9:60080734-60080858 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 111, 77 |
| Conread position: | 855-961 |
| Cow position: | chr9:4241250-4241358 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-961 |
| Cow position: | chr9:44625062-44625170 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 855-961 |
| Cow position: | chr9:52485069-52484961 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-965 |
| Cow position: | chr9:21292564-21292450 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 855-966 |
| Cow position: | chr9:39148925-39149038 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 855-967 |
| Cow position: | chr9:22228519-22228412 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 855-968 |
| Cow position: | chr9:1878155-1878041 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 855-968 |
| Cow position: | chr9:5327105-5327219 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 855-968 |
| Cow position: | chr9:31346792-31346911 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 855-969 |
| Cow position: | chr9:31215922-31216042 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:5342403-5342284 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:7806111-7805998 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:9459832-9459947 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:13670479-13670596 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:17872264-17872147 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:20579745-20579631 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:23971050-23970934 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:25400344-25400235 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:26394505-26394386 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:34362579-34362701 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:34707467-34707348 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:40603510-40603631 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:40984347-40984468 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:42497671-42497789 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:42586705-42586593 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:45141753-45141637 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:50382475-50382359 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 855-970 |
| Cow position: | chr9:53120847-53120956 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:57642356-57642469 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 855-970 |
| Cow position: | chr9:61738764-61738885 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 855-971 |
| Cow position: | chr9:22443780-22443663 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 855-971 |
| Cow position: | chr9:34399513-34399635 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 855-971 |
| Cow position: | chr9:56065409-56065528 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 855-974 |
| Cow position: | chr9:29819569-29819684 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 855-975 |
| Cow position: | chr9:36627965-36628085 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 54, 84 |
| Conread position: | 855-978 |
| Cow position: | chr9:17769164-17769288 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 855-979 |
| Cow position: | chr9:24079148-24079274 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 855-986 |
| Cow position: | chr9:3946303-3946167 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 855-989 |
| Cow position: | chr9:3387559-3387688 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 124, 52 |
| Conread position: | 855-1008 |
| Cow position: | chr9:12773537-12773691 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 91 |
| Conread position: | 855-1012 |
| Cow position: | chr9:11123637-11123479 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 63, 145 |
| Conread position: | 855-1042 |
| Cow position: | chr9:9091265-9091072 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 125 |
| Conread position: | 856-966 |
| Cow position: | chr9:60741339-60741225 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 101 |
| Conread position: | 856-968 |
| Cow position: | chr9:20712682-20712797 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 856-968 |
| Cow position: | chr9:22447450-22447333 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 856-968 |
| Cow position: | chr9:63785065-63784953 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 52 |
| Conread position: | 856-969 |
| Cow position: | chr9:27345745-27345622 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 92 |
| Conread position: | 856-969 |
| Cow position: | chr9:58452226-58452113 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 856-970 |
| Cow position: | chr9:6237646-6237530 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 856-970 |
| Cow position: | chr9:53323943-53323821 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 856-970 |
| Cow position: | chr9:53762543-53762657 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 856-970 |
| Cow position: | chr9:55807478-55807594 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 856-971 |
| Cow position: | chr9:61434196-61434084 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 856-974 |
| Cow position: | chr9:62631823-62631705 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 857-970 |
| Cow position: | chr9:61847270-61847161 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 857-1012 |
| Cow position: | chr9:44822477-44822320 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 857-1012 |
| Cow position: | chr9:51721042-51720893 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 858-969 |
| Cow position: | chr9:26388062-26388170 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 858-974 |
| Cow position: | chr9:58734109-58734224 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 859-975 |
| Cow position: | chr9:44584448-44584560 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 860-968 |
| Cow position: | chr9:20637223-20637335 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 868-1016 |
| Cow position: | chr9:3353223-3353372 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 103, 123 |
| Conread position: | 879-970 |
| Cow position: | chr9:5836636-5836727 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 78 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 879-970 |
| Cow position: | chr9:11168603-11168693 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 79 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.