Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8042K20.5 |
| Conread position: | 820-968 |
| Cow position: | chrX:41809922-41810073 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 849-998 |
| Cow position: | chrX:26956340-26956488 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 123, 63 |
| Conread position: | 851-970 |
| Cow position: | chrX:4559953-4559826 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 851-1007 |
| Cow position: | chrX:1122328-1122493 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 853-966 |
| Cow position: | chrX:35885515-35885630 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 853-968 |
| Cow position: | chrX:42246964-42247087 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 853-970 |
| Cow position: | chrX:4768945-4768825 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 855-956 |
| Cow position: | chrX:11454389-11454288 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 53 |
| Conread position: | 855-965 |
| Cow position: | chrX:32910312-32910197 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 855-966 |
| Cow position: | chrX:16762983-16762871 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 855-968 |
| Cow position: | chrX:1571381-1571494 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 855-968 |
| Cow position: | chrX:11653982-11653865 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 855-968 |
| Cow position: | chrX:23497482-23497596 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 855-968 |
| Cow position: | chrX:46910023-46909910 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 855-969 |
| Cow position: | chrX:28940459-28940339 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 855-969 |
| Cow position: | chrX:29601614-29601734 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:1087933-1088050 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:3806893-3806775 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 855-970 |
| Cow position: | chrX:4399333-4399212 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:9201758-9201641 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:11529553-11529436 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:14973542-14973653 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:15006944-15007056 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:17525662-17525774 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:23358902-23359021 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:27415373-27415487 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:31279712-31279831 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:31436684-31436567 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:32747937-32747825 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:38094311-38094427 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 855-970 |
| Cow position: | chrX:38218928-38218807 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:41215538-41215415 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:41238147-41238262 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:42875424-42875305 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 855-970 |
| Cow position: | chrX:43028444-43028325 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 855-971 |
| Cow position: | chrX:45598393-45598513 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 855-975 |
| Cow position: | chrX:30824200-30824078 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 120 |
| Conread position: | 855-976 |
| Cow position: | chrX:13893021-13892904 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 855-980 |
| Cow position: | chrX:22284898-22284773 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 855-981 |
| Cow position: | chrX:3494835-3494964 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 121 |
| Conread position: | 855-989 |
| Cow position: | chrX:38726929-38727063 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 855-1007 |
| Cow position: | chrX:19356679-19356520 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 855-1009 |
| Cow position: | chrX:42331488-42331335 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 117, 13 |
| Conread position: | 855-1013 |
| Cow position: | chrX:12958-12798 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 855-1022 |
| Cow position: | chrX:20152063-20151897 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 856-969 |
| Cow position: | chrX:35382828-35382943 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 856-970 |
| Cow position: | chrX:35029721-35029833 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 856-970 |
| Cow position: | chrX:41166615-41166732 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 856-971 |
| Cow position: | chrX:4366559-4366438 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 859-970 |
| Cow position: | chrX:19795298-19795410 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 99 |
| Conread position: | 861-970 |
| Cow position: | chrX:46068554-46068666 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 878-970 |
| Cow position: | chrX:40543336-40543428 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 71 |
Show alignments to all cow chromosomes.