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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8043L16.5.5
        

               
Conread position:
               
422-696
               

               
Cow position:
               
chr21:22140598-22140327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
422-802
               

               
Cow position:
               
chr21:46598789-46598416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
424-694
               

               
Cow position:
               
chr21:2935015-2934740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
7, 64
               

               
Conread position:
               
441-629
               

               
Cow position:
               
chr21:20774720-20774905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 42
               

               
Conread position:
               
441-775
               

               
Cow position:
               
chr21:11243659-11244003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
442-790
               

               
Cow position:
               
chr21:876176-876525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
442-874
               

               
Cow position:
               
chr21:37664984-37664564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
443-605
               

               
Cow position:
               
chr21:26182893-26182731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
443-696
               

               
Cow position:
               
chr21:31836119-31835870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
443-769
               

               
Cow position:
               
chr21:9732843-9732516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
443-802
               

               
Cow position:
               
chr21:17053720-17053347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
444-625
               

               
Cow position:
               
chr21:38900533-38900715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
444-633
               

               
Cow position:
               
chr21:26421905-26421715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
444-663
               

               
Cow position:
               
chr21:13250577-13250362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
444-664
               

               
Cow position:
               
chr21:12539157-12539364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
444-664
               

               
Cow position:
               
chr21:15959157-15959375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-668
               

               
Cow position:
               
chr21:35984328-35984543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
444-671
               

               
Cow position:
               
chr21:13190197-13190419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
444-671
               

               
Cow position:
               
chr21:36669319-36669544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
444-680
               

               
Cow position:
               
chr21:30327886-30328111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
444-689
               

               
Cow position:
               
chr21:44092376-44092132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-690
               

               
Cow position:
               
chr21:5418610-5418866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
13, 143
               

               
Conread position:
               
444-690
               

               
Cow position:
               
chr21:42659379-42659134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 49
               

               
Conread position:
               
444-690
               

               
Cow position:
               
chr21:46833515-46833273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
444-691
               

               
Cow position:
               
chr21:36626468-36626231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
444-696
               

               
Cow position:
               
chr21:23971071-23970828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
444-701
               

               
Cow position:
               
chr21:13133214-13132952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-703
               

               
Cow position:
               
chr21:37191475-37191223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
444-706
               

               
Cow position:
               
chr21:29907990-29907733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
444-757
               

               
Cow position:
               
chr21:12507172-12507478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
444-757
               

               
Cow position:
               
chr21:13533694-13534005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
444-770
               

               
Cow position:
               
chr21:8219614-8219941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
444-773
               

               
Cow position:
               
chr21:13532129-13531803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-793
               

               
Cow position:
               
chr21:46386128-46385782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
444-796
               

               
Cow position:
               
chr21:170930-171283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 42
               

               
Conread position:
               
444-797
               

               
Cow position:
               
chr21:42686901-42686556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
444-800
               

               
Cow position:
               
chr21:1264025-1264379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
444-800
               

               
Cow position:
               
chr21:5090856-5091220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
444-800
               

               
Cow position:
               
chr21:21233358-21233714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
10, 119
               

               
Conread position:
               
444-800
               

               
Cow position:
               
chr21:34618147-34618506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
444-801
               

               
Cow position:
               
chr21:34547914-34547553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr21:2157863-2158221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr21:17839790-17840147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr21:36070506-36070143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr21:39420507-39420143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
444-803
               

               
Cow position:
               
chr21:18336673-18336316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
11, 113
               

               
Conread position:
               
444-809
               

               
Cow position:
               
chr21:4571113-4571465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
444-833
               

               
Cow position:
               
chr21:11326856-11326467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
444-835
               

               
Cow position:
               
chr21:2906137-2905747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
444-841
               

               
Cow position:
               
chr21:40288324-40287921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
445-669
               

               
Cow position:
               
chr21:25630516-25630737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
445-690
               

               
Cow position:
               
chr21:5586088-5585838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
445-706
               

               
Cow position:
               
chr21:43352145-43351886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
8, 37
               

               
Conread position:
               
445-752
               

               
Cow position:
               
chr21:21021404-21021682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
445-772
               

               
Cow position:
               
chr21:22556720-22557030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
445-835
               

               
Cow position:
               
chr21:42908271-42907887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
446-713
               

               
Cow position:
               
chr21:23675093-23675361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
446-773
               

               
Cow position:
               
chr21:5593220-5592891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
446-776
               

               
Cow position:
               
chr21:20969623-20969289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
8, 36
               

               
Conread position:
               
446-791
               

               
Cow position:
               
chr21:31706824-31707177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
447-774
               

               
Cow position:
               
chr21:11076544-11076233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 28
               

               
Conread position:
               
447-830
               

               
Cow position:
               
chr21:48624707-48625089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
448-615
               

               
Cow position:
               
chr21:16230866-16231032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 33
               

               
Conread position:
               
448-668
               

               
Cow position:
               
chr21:39763962-39763748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
6, 19
               

               
Conread position:
               
448-676
               

               
Cow position:
               
chr21:38643717-38643941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
6, 32
               

               
Conread position:
               
448-689
               

               
Cow position:
               
chr21:39081282-39081038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
448-706
               

               
Cow position:
               
chr21:19800070-19800332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
448-748
               

               
Cow position:
               
chr21:9574416-9574120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
6, 31
               

               
Conread position:
               
448-770
               

               
Cow position:
               
chr21:12782379-12782056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
448-790
               

               
Cow position:
               
chr21:27551691-27551344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
448-802
               

               
Cow position:
               
chr21:16117999-16117642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
448-802
               

               
Cow position:
               
chr21:16480844-16480478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
448-815
               

               
Cow position:
               
chr21:43704563-43704925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
6, 45
               

               
Conread position:
               
449-695
               

               
Cow position:
               
chr21:15276094-15276337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
449-704
               

               
Cow position:
               
chr21:15354269-15354018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
9, 43
               

               
Conread position:
               
449-708
               

               
Cow position:
               
chr21:45843878-45843621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
449-733
               

               
Cow position:
               
chr21:30313679-30313955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 29
               

               
Conread position:
               
449-785
               

               
Cow position:
               
chr21:21477145-21476832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
449-792
               

               
Cow position:
               
chr21:27355217-27355561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
450-802
               

               
Cow position:
               
chr21:44474196-44474554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
451-617
               

               
Cow position:
               
chr21:26865210-26865376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
451-762
               

               
Cow position:
               
chr21:29653710-29654018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 31
               

               
Conread position:
               
452-617
               

               
Cow position:
               
chr21:34511472-34511308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 37
               

               
Conread position:
               
452-661
               

               
Cow position:
               
chr21:20234500-20234297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
141, 40
               

               
Conread position:
               
452-693
               

               
Cow position:
               
chr21:13432213-13431978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
452-724
               

               
Cow position:
               
chr21:28173489-28173226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 37
               

               
Conread position:
               
452-773
               

               
Cow position:
               
chr21:29769485-29769169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
90, 37
               

               
Conread position:
               
452-790
               

               
Cow position:
               
chr21:23658313-23658654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
452-797
               

               
Cow position:
               
chr21:39385432-39385081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
103, 32
               

               
Conread position:
               
452-802
               

               
Cow position:
               
chr21:12271370-12271722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
95, 18
               

               
Conread position:
               
452-848
               

               
Cow position:
               
chr21:2206577-2206183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
452-858
               

               
Cow position:
               
chr21:36620375-36619978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
453-658
               

               
Cow position:
               
chr21:15933465-15933674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 116
               

               
Conread position:
               
453-671
               

               
Cow position:
               
chr21:4461056-4460840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
94, 35
               

               
Conread position:
               
453-713
               

               
Cow position:
               
chr21:40629641-40629914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 190
               

               
Conread position:
               
453-771
               

               
Cow position:
               
chr21:10156481-10156158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
94, 48
               

               
Conread position:
               
453-802
               

               
Cow position:
               
chr21:26254818-26255177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 162
               

               
Conread position:
               
454-659
               

               
Cow position:
               
chr21:6025233-6025031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
93, 23
               

               
Conread position:
               
454-678
               

               
Cow position:
               
chr21:41866458-41866235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
454-715
               

               
Cow position:
               
chr21:2404760-2405012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
454-733
               

               
Cow position:
               
chr21:17032808-17032530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
91, 30
               

               
Conread position:
               
454-761
               

               
Cow position:
               
chr21:13275652-13275956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
454-761
               

               
Cow position:
               
chr21:35779427-35779129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
454-805
               

               
Cow position:
               
chr21:16981354-16981701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 24
               

               
Conread position:
               
454-858
               

               
Cow position:
               
chr21:18045564-18045168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
455-597
               

               
Cow position:
               
chr21:2847260-2847119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
91, 34
               

               
Conread position:
               
455-628
               

               
Cow position:
               
chr21:22098440-22098612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
455-661
               

               
Cow position:
               
chr21:32400669-32400879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
455-662
               

               
Cow position:
               
chr21:44798537-44798330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
455-688
               

               
Cow position:
               
chr21:43260057-43260292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
455-703
               

               
Cow position:
               
chr21:44193183-44192945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
92, 35
               

               
Conread position:
               
455-708
               

               
Cow position:
               
chr21:26564040-26563790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
455-719
               

               
Cow position:
               
chr21:6297730-6297996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 33
               

               
Conread position:
               
455-777
               

               
Cow position:
               
chr21:40178162-40178488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
455-787
               

               
Cow position:
               
chr21:43320645-43320982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
455-795
               

               
Cow position:
               
chr21:42633876-42633533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
455-800
               

               
Cow position:
               
chr21:46967758-46967406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
455-802
               

               
Cow position:
               
chr21:19623172-19623526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
455-802
               

               
Cow position:
               
chr21:45352819-45353171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
456-654
               

               
Cow position:
               
chr21:12314084-12314279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
91, 24
               

               
Conread position:
               
456-733
               

               
Cow position:
               
chr21:34394750-34394486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
456-752
               

               
Cow position:
               
chr21:23942742-23942462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
252, 36
               

               
Conread position:
               
456-796
               

               
Cow position:
               
chr21:7697045-7697392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
456-803
               

               
Cow position:
               
chr21:29634367-29634714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
457-689
               

               
Cow position:
               
chr21:31449288-31449058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
457-694
               

               
Cow position:
               
chr21:1093540-1093762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
457-803
               

               
Cow position:
               
chr21:22370792-22370435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
459-719
               

               
Cow position:
               
chr21:17794418-17794161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
459-796
               

               
Cow position:
               
chr21:4137076-4136756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
299, 25
               

               
Conread position:
               
459-802
               

               
Cow position:
               
chr21:36024009-36024355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
459-847
               

               
Cow position:
               
chr21:4177928-4177546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
460-802
               

               
Cow position:
               
chr21:15468525-15468184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
461-693
               

               
Cow position:
               
chr21:9328968-9328746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
461-706
               

               
Cow position:
               
chr21:38943881-38943648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
461-795
               

               
Cow position:
               
chr21:39046459-39046777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
257, 13
               

               
Conread position:
               
463-795
               

               
Cow position:
               
chr21:36399503-36399824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
464-705
               

               
Cow position:
               
chr21:6956390-6956152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
465-661
               

               
Cow position:
               
chr21:10576495-10576682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
465-664
               

               
Cow position:
               
chr21:15913424-15913621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
466-779
               

               
Cow position:
               
chr21:28202279-28202599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
63, 45
               

               
Conread position:
               
466-818
               

               
Cow position:
               
chr21:21126651-21127009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
467-632
               

               
Cow position:
               
chr21:30265157-30264994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
468-797
               

               
Cow position:
               
chr21:5093009-5092682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
214, 15
               

               
Conread position:
               
480-660
               

               
Cow position:
               
chr21:4594804-4594626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
480-675
               

               
Cow position:
               
chr21:21033408-21033605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 29
               

               
Conread position:
               
480-802
               

               
Cow position:
               
chr21:17258356-17258026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
63, 43
               

               
Conread position:
               
482-686
               

               
Cow position:
               
chr21:41189151-41189361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 154
               

               
Conread position:
               
482-844
               

               
Cow position:
               
chr21:38240841-38240478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 81
               

               
Conread position:
               
483-687
               

               
Cow position:
               
chr21:46316835-46316630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 176
               

               
Conread position:
               
483-774
               

               
Cow position:
               
chr21:4860366-4860063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
62, 128
               

               
Conread position:
               
484-733
               

               
Cow position:
               
chr21:35355779-35355534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
58, 131
               

               
Conread position:
               
484-744
               

               
Cow position:
               
chr21:35816038-35816305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
484-857
               

               
Cow position:
               
chr21:12625712-12625342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
63, 154
               

               
Conread position:
               
485-742
               

               
Cow position:
               
chr21:4940311-4940561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
485-810
               

               
Cow position:
               
chr21:29078769-29078432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
62, 270
               

               
Conread position:
               
486-668
               

               
Cow position:
               
chr21:26267695-26267873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 111
               

               
Conread position:
               
486-678
               

               
Cow position:
               
chr21:41538997-41539196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
486-688
               

               
Cow position:
               
chr21:24981117-24981314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
486-703
               

               
Cow position:
               
chr21:29498984-29499204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
486-715
               

               
Cow position:
               
chr21:34780311-34780536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
486-796
               

               
Cow position:
               
chr21:15944294-15944601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
486-797
               

               
Cow position:
               
chr21:45457525-45457834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
239, 54
               

               
Conread position:
               
486-802
               

               
Cow position:
               
chr21:18052501-18052177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
487-854
               

               
Cow position:
               
chr21:19552703-19553066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 190
               

               
Conread position:
               
489-703
               

               
Cow position:
               
chr21:20547610-20547818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
108, 47
               

               
Conread position:
               
489-713
               

               
Cow position:
               
chr21:24006837-24006622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
489-797
               

               
Cow position:
               
chr21:47165713-47166025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
489-835
               

               
Cow position:
               
chr21:24793017-24793355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
148, 58
               

               
Conread position:
               
489-835
               

               
Cow position:
               
chr21:40666570-40666921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 146
               

               
Conread position:
               
489-838
               

               
Cow position:
               
chr21:20230119-20229755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
55, 98
               

               
Conread position:
               
490-646
               

               
Cow position:
               
chr21:35438784-35438935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
58, 75
               

               
Conread position:
               
490-664
               

               
Cow position:
               
chr21:3506326-3506501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 142
               

               
Conread position:
               
490-706
               

               
Cow position:
               
chr21:37646760-37646541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
490-798
               

               
Cow position:
               
chr21:8127599-8127278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
57, 98
               

               
Conread position:
               
491-802
               

               
Cow position:
               
chr21:29631339-29631674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
493-770
               

               
Cow position:
               
chr21:43034546-43034816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 150
               

               
Conread position:
               
493-796
               

               
Cow position:
               
chr21:46556357-46556049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
494-698
               

               
Cow position:
               
chr21:48507703-48507908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
51, 140
               

               
Conread position:
               
494-714
               

               
Cow position:
               
chr21:3793864-3793651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 40
               

               
Conread position:
               
495-798
               

               
Cow position:
               
chr21:35643346-35643037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
495-805
               

               
Cow position:
               
chr21:15319817-15319505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 175
               

               
Conread position:
               
496-758
               

               
Cow position:
               
chr21:22166829-22166573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
50, 126
               

               
Conread position:
               
496-802
               

               
Cow position:
               
chr21:22176237-22175927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
50, 126
               

               
Conread position:
               
496-802
               

               
Cow position:
               
chr21:26506493-26506799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 44
               

               
Conread position:
               
498-701
               

               
Cow position:
               
chr21:29556573-29556375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
46, 70
               

               
Conread position:
               
499-652
               

               
Cow position:
               
chr21:47028178-47028020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
500-793
               

               
Cow position:
               
chr21:22902606-22902307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
502-786
               

               
Cow position:
               
chr21:40725995-40725712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
503-711
               

               
Cow position:
               
chr21:47343077-47343288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 129
               

               
Conread position:
               
504-675
               

               
Cow position:
               
chr21:32892985-32892818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
508-660
               

               
Cow position:
               
chr21:21778214-21778060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
509-795
               

               
Cow position:
               
chr21:13902131-13902437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
512-713
               

               
Cow position:
               
chr21:48338273-48338083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
184, 17
               

               
Conread position:
               
512-796
               

               
Cow position:
               
chr21:20315796-20316081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
35, 182
               

               
Conread position:
               
513-733
               

               
Cow position:
               
chr21:34322362-34322578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
513-802
               

               
Cow position:
               
chr21:30838772-30838474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
514-803
               

               
Cow position:
               
chr21:35600547-35600841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
514-836
               

               
Cow position:
               
chr21:31997823-31998162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
515-715
               

               
Cow position:
               
chr21:19651939-19651737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
32, 92
               

               
Conread position:
               
515-802
               

               
Cow position:
               
chr21:40648010-40648306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 120
               

               
Conread position:
               
515-844
               

               
Cow position:
               
chr21:20928075-20927743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
516-798
               

               
Cow position:
               
chr21:4099114-4099402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
519-770
               

               
Cow position:
               
chr21:28467948-28467693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 120
               

               
Conread position:
               
527-795
               

               
Cow position:
               
chr21:4539415-4539689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
539-687
               

               
Cow position:
               
chr21:1208758-1208610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 59
               

               
Conread position:
               
543-703
               

               
Cow position:
               
chr21:14593654-14593814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
543-731
               

               
Cow position:
               
chr21:45947592-45947778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
171, 60
               

               
Conread position:
               
543-797
               

               
Cow position:
               
chr21:2529310-2529052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
139, 105
               

               
Conread position:
               
543-801
               

               
Cow position:
               
chr21:22907625-22907366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
543-802
               

               
Cow position:
               
chr21:1405408-1405670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
146, 90
               

               
Conread position:
               
546-696
               

               
Cow position:
               
chr21:2138604-2138457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
546-759
               

               
Cow position:
               
chr21:36086891-36086678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
139, 166
               

               
Conread position:
               
550-762
               

               
Cow position:
               
chr21:16937808-16938020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
139, 94
               

               
Conread position:
               
550-795
               

               
Cow position:
               
chr21:77995-77741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
555-802
               

               
Cow position:
               
chr21:788751-788498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 114
               

               
Conread position:
               
556-799
               

               
Cow position:
               
chr21:8877654-8877907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 190
               

               
Conread position:
               
557-841
               

               
Cow position:
               
chr21:21266243-21265960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
134, 18
               

               
Conread position:
               
562-802
               

               
Cow position:
               
chr21:46763696-46763934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
81, 63
               

               
Conread position:
               
563-772
               

               
Cow position:
               
chr21:277851-278068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
567-803
               

               
Cow position:
               
chr21:48592731-48592971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
120, 37
               

               
Conread position:
               
571-802
               

               
Cow position:
               
chr21:4468955-4469196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
576-800
               

               
Cow position:
               
chr21:34767452-34767683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
577-797
               

               
Cow position:
               
chr21:11321627-11321850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
116, 73
               

               
Conread position:
               
603-838
               

               
Cow position:
               
chr21:12704377-12704617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
85, 43
               
Show alignments to all cow chromosomes.