Cow genome map

Conread name: Ss1.1-Pig4-TMW8043L16.5.5

Conread position: 422-786
Cow position: chr27:19014909-19015276 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 245
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 13

Conread position: 443-631
Cow position: chr27:24249113-24248933 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 11, 26

Conread position: 443-802
Cow position: chr27:14351192-14351548 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 11

Conread position: 444-627
Cow position: chr27:2084361-2084179 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 10, 37

Conread position: 444-645
Cow position: chr27:7418619-7418824 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 10, 46

Conread position: 444-661
Cow position: chr27:19050783-19051000 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 10, 31

Conread position: 444-679
Cow position: chr27:18527996-18527761 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 181
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 10, 47

Conread position: 444-683
Cow position: chr27:29046808-29047045 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 12, 46

Conread position: 444-685
Cow position: chr27:1903634-1903402 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 37

Conread position: 444-688
Cow position: chr27:16216328-16216089 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 11, 46

Conread position: 444-691
Cow position: chr27:30879207-30879450 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 12, 46

Conread position: 444-697
Cow position: chr27:1785399-1785146 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 38

Conread position: 444-702
Cow position: chr27:15465630-15465378 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 44

Conread position: 444-718
Cow position: chr27:18973311-18973583 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 188
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 42

Conread position: 444-795
Cow position: chr27:27582134-27582490 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 244
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 36

Conread position: 444-797
Cow position: chr27:21793965-21793617 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 249
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 10, 42

Conread position: 444-800
Cow position: chr27:25638372-25638723 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 37

Conread position: 444-802
Cow position: chr27:31343107-31342746 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 41

Conread position: 444-819
Cow position: chr27:16111023-16111394 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 260
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 47, 53

Conread position: 444-842
Cow position: chr27:24438066-24437686 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 276
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 10, 46

Conread position: 445-626
Cow position: chr27:23793756-23793581 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 37

Conread position: 447-744
Cow position: chr27:9279441-9279144 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 202
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 11, 46

Conread position: 448-661
Cow position: chr27:17049551-17049339 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 8, 45

Conread position: 448-664
Cow position: chr27:17438872-17438647 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 6, 167

Conread position: 448-670
Cow position: chr27:13660975-13661186 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 99, 7

Conread position: 448-791
Cow position: chr27:3531454-3531119 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 449-706
Cow position: chr27:16512696-16512440 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 26, 40

Conread position: 449-823
Cow position: chr27:8320446-8320802 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 248
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 200, 36

Conread position: 452-661
Cow position: chr27:441596-441390 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 94, 36

Conread position: 452-691
Cow position: chr27:11634226-11633993 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 61, 37

Conread position: 452-790
Cow position: chr27:14870194-14870542 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 29

Conread position: 452-800
Cow position: chr27:11677719-11677357 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 252
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 80, 47

Conread position: 453-768
Cow position: chr27:9121993-9121684 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 215
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 39, 49

Conread position: 455-624
Cow position: chr27:19390791-19390621 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 89, 34

Conread position: 455-703
Cow position: chr27:525405-525149 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 169
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 126

Conread position: 455-711
Cow position: chr27:12983389-12983146 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 182, 34

Conread position: 455-792
Cow position: chr27:15509185-15509532 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 246
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 92, 30

Conread position: 455-802
Cow position: chr27:15424247-15423896 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 247
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 89, 27

Conread position: 456-713
Cow position: chr27:19627030-19627285 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 185
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 18, 71

Conread position: 456-787
Cow position: chr27:2882421-2882749 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 92, 28

Conread position: 456-795
Cow position: chr27:9436715-9437065 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 246
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 41, 30

Conread position: 456-833
Cow position: chr27:24066269-24066653 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 254
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 65, 18

Conread position: 457-760
Cow position: chr27:26376146-26375854 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 203
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 66, 27

Conread position: 457-802
Cow position: chr27:11272849-11272508 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 238
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 92, 29

Conread position: 457-802
Cow position: chr27:25876128-25876493 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 254
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 90, 25

Conread position: 459-668
Cow position: chr27:24068959-24068756 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 33

Conread position: 459-795
Cow position: chr27:24130865-24130525 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 224
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 10

Conread position: 459-802
Cow position: chr27:15761776-15761420 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 246
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 82, 20

Conread position: 464-762
Cow position: chr27:6335392-6335101 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 207
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 83, 28

Conread position: 466-660
Cow position: chr27:26831219-26831034 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 81, 15

Conread position: 468-689
Cow position: chr27:16241575-16241358 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 78, 19

Conread position: 478-790
Cow position: chr27:19658503-19658176 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 214
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 69, 11

Conread position: 479-690
Cow position: chr27:21336301-21336514 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 68, 110

Conread position: 479-761
Cow position: chr27:9674997-9674718 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 61, 17

Conread position: 479-802
Cow position: chr27:27629821-27629494 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 229
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 38, 158

Conread position: 482-841
Cow position: chr27:28235224-28234870 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 251
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 63, 91

Conread position: 486-671
Cow position: chr27:24942045-24942228 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 61, 152

Conread position: 486-727
Cow position: chr27:3203639-3203885 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 59, 88

Conread position: 486-786
Cow position: chr27:4873543-4873247 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 196
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 157, 53

Conread position: 486-796
Cow position: chr27:21229996-21230291 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 210
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 17

Conread position: 486-802
Cow position: chr27:4077846-4077533 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 229
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 77, 60

Conread position: 487-811
Cow position: chr27:7483186-7483528 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 239
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 60, 10

Conread position: 487-833
Cow position: chr27:9484981-9485339 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 247
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 59, 225

Conread position: 489-661
Cow position: chr27:11419840-11419666 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 42, 47

Conread position: 490-651
Cow position: chr27:19533110-19532949 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 58, 83

Conread position: 490-689
Cow position: chr27:25651174-25650973 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 58, 167

Conread position: 490-696
Cow position: chr27:16610110-16609907 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 132

Conread position: 490-786
Cow position: chr27:6144690-6144386 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 210
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 24, 86

Conread position: 490-796
Cow position: chr27:22245002-22245318 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 57, 29

Conread position: 490-858
Cow position: chr27:13675172-13675542 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 257
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 57, 83

Conread position: 498-796
Cow position: chr27:12160630-12160932 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 49, 31

Conread position: 500-858
Cow position: chr27:1844960-1844590 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 238
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 47, 154

Conread position: 503-802
Cow position: chr27:23157710-23157399 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 214
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 97

Conread position: 506-811
Cow position: chr27:16493371-16493060 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 217
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 18, 196

Conread position: 507-688
Cow position: chr27:10855162-10855345 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 42, 70

Conread position: 511-695
Cow position: chr27:23680443-23680266 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 517-690
Cow position: chr27:7278188-7278364 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 533-753
Cow position: chr27:18986663-18986881 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 149
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 207, 138

Conread position: 533-836
Cow position: chr27:28117916-28118235 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 216
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 6, 217

Conread position: 534-795
Cow position: chr27:26490405-26490681 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 193
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 5

Conread position: 543-748
Cow position: chr27:21705146-21705356 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 148, 13

Conread position: 543-762
Cow position: chr27:12489404-12489189 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 141, 16

Conread position: 543-802
Cow position: chr27:21279900-21279647 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 218, 107

Conread position: 577-802
Cow position: chr27:7504247-7504009 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 120, 19

Conread position: 582-796
Cow position: chr27:14307645-14307427 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 149, 78

Conread position: 609-794
Cow position: chr27:14162833-14162645 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 152, 50

Show alignments to all cow chromosomes.